ID AJ292228; SV 1; linear; genomic RNA; STD; VRL; 2978 BP. XX AC AJ292228; XX DT 06-FEB-2002 (Rel. 70, Created) DT 06-FEB-2002 (Rel. 70, Last updated, Version 1) XX DE Garlic latent virus partial genomic RNA, isolate YH3 XX KW coat protein; nucleic acid binding protein; ORF1; ORF2; ORF3; ORF4; ORF5; KW ORF6; RNA-dependent RNA-polymerase; TGB1 protein; TGB2 protein; KW TGB3 protein. XX OS Garlic latent virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-2978 RA Adams M.J.; RT ; RL Submitted (24-JAN-2001) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s007050170037. RX PUBMED; 11722009. RA Chen J., Chen J.P., Adams M.J.; RT "Molecular characterisation of a complex mixture of viruses in garlic with RT mosaic symptoms in China"; RL Arch. Virol. 146(10):1841-1853(2001). XX DR MD5; b8e7df6ee5c70be629ad2cb71e511484. XX FH Key Location/Qualifiers FH FT source 1..2978 FT /organism="Garlic latent virus" FT /host="garlic" FT /isolate="YH3" FT /mol_type="genomic RNA" FT /country="China:Zhejiang" FT /db_xref="taxon:12458" FT CDS <1..452 FT /codon_start=3 FT /product="RNA-dependent RNA-polymerase" FT /note="ORF1" FT /db_xref="GOA:Q8QXX8" FT /db_xref="InterPro:IPR001788" FT /db_xref="UniProtKB/TrEMBL:Q8QXX8" FT /protein_id="CAC83692.1" FT /translation="ANMLFTFLRYDLNGSESICFAGDDMCANRRLRVSLGHEDFLSKLK FT LKAKVAFTKRPTFCGWNLTFFGIYKKPQLVFERMCIAKETNNLHNCIDNYAIEISFAYV FT KGELAVCHMDEEELNAFYNCVRVVVKNKHLLKSNVRDLFENENET" FT CDS 483..1193 FT /product="TGB1 protein" FT /note="ORF2" FT /db_xref="GOA:Q8QXX7" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8QXX7" FT /protein_id="CAC83693.1" FT /translation="MDVLCKVLIECGFSRLEGSSNKIKVILGVPGCGKSSCIRKLINLD FT SRFIAATFGVPDPFNVTGRRIRAVTELSAIDCTNKLLLLDEFQRGEYEELKPFALFGDV FT CQFFDFTKAYPVADWCKTVSHRVNEKTCNYLREFGFEISSHIPGELNFGGLYSEELQGV FT VITFCTQVSALLKAHSVEHHTVEDCRGSEFPSVSLCLSDSVVHQEDLAKFYVCATRSCG FT NLLILTPDASKSSA" FT CDS 1171..1503 FT /product="TGB2 protein" FT /note="ORF3" FT /db_xref="GOA:Q8QXX6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8QXX6" FT /protein_id="CAC83694.1" FT /translation="MPLSPPPDHTKTFFAGAVGVCIALCLYTLTRSTLPHVGDNIHSLP FT HGGCYQDGTKRIVYNSPARNFPSSNLLLNFSSPLCLLALILGLICLSERVKSSSSTRIT FT CSCNHS" FT CDS 1482..1676 FT /product="TGB3 protein" FT /note="ORF4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8QXX5" FT /protein_id="CAC83695.1" FT /translation="MQLQPLVALVTGLLVTLLLCYSLESFKTEKCTVVITGESVKIFGC FT EFTRDFIDFAKQAKPFGSL" FT CDS 1702..2595 FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q8QXX4" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:Q8QXX4" FT /protein_id="CAC83696.1" FT /translation="MANEEEELSNVQNLPTRDPGTIPERERNKAVNDVGVMEREGFEAV FT LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL FT VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT FT ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY FT AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG FT GFFGCFPKNNFRENRC" FT CDS 2556..2885 FT /product="nucleic acid binding protein" FT /product="hypothetical protein" FT /note="alternative start" FT /note="ORF6" FT /db_xref="GOA:Q8QXX3" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:Q8QXX3" FT /protein_id="CAC83697.1" FT /translation="MFSQKQLQRESMLIKQRTYRRLLRAIFKLHTKENCVDVINIIVSK FT IVCESAGASHYARARRAMSIGRCPRCFRCSPRFYFTKNCDTRTCSPGISYNAKVKDFIV FT DGVTM" FT CDS 2589..2885 FT /product="nucleic acid binding protein" FT /note="ORF6" FT /db_xref="GOA:Q8QXX2" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:Q8QXX2" FT /protein_id="CAC83698.1" FT /translation="MLIKQRTYRRLLRAIFKLHTKENCVDVINIIVSKIVCESAGASHY FT ARARRAMSIGRCPRCFRCSPRFYFTKNCDTRTCSPGISYNAKVKDFIVDGVTM" XX SQ Sequence 2978 BP; 829 A; 599 C; 695 G; 855 T; 0 other; tggccaatat gcttttcacc ttcttacgat atgatttgaa tgggagtgag agcatttgct 60 ttgccggaga tgatatgtgt gctaaccgta gattacgtgt gagtcttggg cacgaagatt 120 tcttgagcaa attgaaattg aaagctaaag tggcgttcac aaaaaggcct accttttgcg 180 gttggaattt gacttttttc ggcatataca aaaaacccca actggttttt gagaggatgt 240 gcatagcaaa agaaacaaat aatttgcaca actgcattga taattacgct attgagataa 300 gttttgccta tgtgaagggt gaattggccg tttgccatat ggatgaagaa gagctgaatg 360 cgttttacaa ttgtgtccgg gtcgtggtaa agaacaaaca ccttttgaaa tcaaatgtcc 420 gtgatttgtt tgaaaacgaa aatgagacgt gagcttaggt gttagctgta tttttgatat 480 atatggacgt attgtgtaaa gtgttaattg agtgtggttt tagtagatta gaaggttcta 540 gtaataaaat caaagtgatc ttaggcgtac ccggttgtgg taagagtagt tgtattagga 600 agttaattaa cttagattca cgttttatcg ctgccacttt cggagtccct gaccctttca 660 acgtcacagg cagaaggatc cgtgccgtga ctgaattgtc tgccattgat tgtactaata 720 agttgctttt gcttgacgaa ttccaaaggg gagaatacga ggaactgaaa cctttcgccc 780 tctttgggga cgtgtgccaa tttttcgatt tcacgaaagc ctaccctgtg gcagactggt 840 gcaagactgt gagtcatcgt gtgaacgaga aaacttgcaa ttatctacgt gagttcggtt 900 ttgaaattag ttcacatatt cctggagaat tgaatttcgg gggattatac tcggaggaat 960 tacaaggcgt tgtgatcacc ttttgcacac aagtttccgc tctcttgaaa gcacattcag 1020 ttgagcatca caccgttgaa gattgtcgtg gatccgaatt tccaagtgtg agcctctgct 1080 taagtgattc tgtggtgcat caagaggatc tggccaaatt ttacgtgtgc gcgacccgaa 1140 gctgtgggaa tctacttata ttgacaccgg atgcctctaa gtcctccgcc tgaccacaca 1200 aagactttct tcgctggtgc cgtcggagtt tgcattgccc tctgcttgta caccttgaca 1260 cgctcaactt tgccacacgt cggggataac atacatagtt tgccgcacgg tggttgttat 1320 caagacggta ccaaacggat tgtctacaac agtccagcta ggaatttccc gagtagcaac 1380 ctgcttctga acttttcctc tccactctgt ttgcttgcac taatcttggg tctgatctgt 1440 ttgagtgaga gggtcaaatc aagctctagc acacgcatca catgcagttg caaccactcg 1500 tagctctagt cactggtctc ttagtcactt tacttctctg ttacagcctt gaaagtttca 1560 aaactgaaaa gtgtactgtg gtgattactg gcgaatcggt caagatattt ggttgtgagt 1620 tcacaaggga tttcatcgac ttcgccaagc aggcaaaacc ttttggttca ctttaggtac 1680 acagcgctct aaattgatat tatggctaac gaagaagaag aactcagtaa cgtgcagaac 1740 ttgccgactc gcgatccagg gactatcccc gagcgtgaac gaaacaaagc agtgaatgat 1800 gttggtgtaa tggaacgtga aggttttgaa gccgtccttc gaaggagcga aagtaggttc 1860 aacaaactta aggagaagtg catgtctgaa ttgtctagcg tgaacgtcac gaactgcggg 1920 tgggagtctg gaagacccaa agctcagctc gctgacaatc tcaaagggga tgcttcaaat 1980 attttcacta ggccctccat ggatgccctc cttgttcgaa attacgcacc tgaaagtaac 2040 aacatggcga ctgctgagga tttggcgaaa atctcagcca aagtacaagc ccttggcgct 2100 ccagaggaat gtttagctga agtcttctgg gacatatgca tgtactgcac cactgcagga 2160 agttctccaa atgtcaatcc caaaggaact atatctgtcg ggggtaaagt tgtaactagg 2220 gacatggttg tagcagtaat caaagaatac tctacattgc gacaagtctg ccgctgctac 2280 gcgcctgtcg tttggaatta catgttgttg aatgaacaac cacccgcaaa ttgggatgca 2340 aaaggtttca ccgagaacac caaatatgca gccttcgaca ctttcgatgc ggtgacaaat 2400 aaagctgcaa tccaaccact tgagggtctg attcgggccc ccactgacgc tgaaagaatc 2460 gcatttgcaa cgcacaaaaa gttggccctg gctaagaatg ctcaaaattc tcgttatgcc 2520 aatacttctg ctgaggttac tggaggtttc ttcggatgtt ttcccaaaaa caacttcaga 2580 gagaatcgat gttgatcaaa cagagaactt accgtcgttt gttgcgtgct atatttaaat 2640 tgcatactaa ggagaattgt gttgatgtaa taaatattat tgtaagtaaa atagtgtgtg 2700 aaagtgcggg tgcttcacat tatgctcgag ctcgtagagc catgagcata ggtaggtgcc 2760 ctcgctgctt ccggtgttca cctcgttttt atttcactaa aaactgtgac actagaactt 2820 gttccccagg aattagctat aatgcaaaag tcaaggactt tatagttgat ggtgtaacaa 2880 tgtgaaaccc tactacaaac cttggctagt tgcccataaa acctaaataa tgtataagtg 2940 ggaacgtata aaataatttg tttttaaaat attttcgc 2978 //