ID   AJ292227; SV 1; linear; genomic RNA; STD; VRL; 1810 BP.
XX
AC   AJ292227;
XX
DT   06-FEB-2002 (Rel. 70, Created)
DT   06-FEB-2002 (Rel. 70, Last updated, Version 1)
XX
DE   Garlic latent virus ORF1 partial genomic RNA, isolate YH2
XX
KW   coat protein; nucleic acid binding protein; ORF1; ORF2; ORF3; ORF4; ORF5;
KW   ORF6; RNA-dependent RNA-polymerase; TGB1 protein; TGB2 protein;
KW   TGB3 protein.
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RC   Revised by [3]
RA   Adams M.J.;
RT   ;
RL   Submitted (24-JAN-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s007050170037.
RX   PUBMED; 11722009.
RA   Chen J., Chen J.P., Adams M.J.;
RT   "Molecular characterisation of a complex mixture of viruses in garlic with
RT   mosaic symptoms in China";
RL   Arch. Virol. 146(10):1841-1853(2001).
XX
RN   [3]
RP   1-1810
RA   Adams M.J.;
RT   ;
RL   Submitted (02-FEB-2001) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
DR   MD5; 59e4b6a4227b7580ea22147bc4a1a979.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1810
FT                   /organism="Garlic latent virus"
FT                   /host="garlic"
FT                   /isolate="YH2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Zhejiang"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /product="TGB2 protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8QXY2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXY2"
FT                   /protein_id="CAC83688.1"
FT                   /translation="MPLRPPPDHTRTYFAGAVGVCVAICLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIFYNSPARKFPSSNLLSGLSAPLCLLVLIIGLICVSEKIRPSTSTRVS
FT                   CRCNHS"
FT   CDS             312..506
FT                   /product="TGB3 protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXY1"
FT                   /protein_id="CAC83689.1"
FT                   /translation="MQVQPLVVLTISLLVTLLLCYSLENLKSEKCTVVITGESVKIIGC
FT                   EFTSDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8QXY0"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXY0"
FT                   /protein_id="CAC83690.1"
FT                   /translation="MARDEEIISEIQKLPTRDPASIPESDRSKAVNDVGVMEREGFEAV
FT                   LKRSENRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEFSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419..1715
FT                   /product="nucleic-acid binding protein"
FT                   /note="ORF6"
FT                   /db_xref="GOA:Q8QXX9"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QXX9"
FT                   /protein_id="CAC83691.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVIDIIVNKIVCERAGASSY
FT                   ARARRAKSIGRCPRCYRCSPGFTFTKNCDTRTCVPGISYNDKVKAFIVDGVTM"
XX
SQ   Sequence 1810 BP; 514 A; 369 C; 420 G; 507 T; 0 other;
     atgccactta gaccaccacc tgatcacaca agaacttact ttgctggtgc agttggtgtt        60
     tgtgtcgcta tttgtttgta cacattgaca cgttcaacat tgcctcacgt gggagataac       120
     atacatagtt tacctcacgg tggttgttat caagacggca caaaacgaat tttttacaat       180
     agtcccgcgc gaaaattccc aagcagtaat ttactatctg gtttatccgc tcctttgtgc       240
     ttgcttgtcc taatcattgg cttaatttgc gtgagtgaga agatcagacc aagtactagc       300
     acaagagttt catgcaggtg caaccactcg tagtgctgac gatcagcttg ctggttactt       360
     tactcctctg ttacagtctc gagaatctta agtccgagaa gtgtactgtt gttattacgg       420
     gagaatcagt caagataatt ggttgtgaat tcacgagtga ctttattgat ttcgctaaac       480
     aagctaaacc ttttggttca ctttaggttt acagcgcttg gaattgatat tatggctaga       540
     gacgaagaaa tcattagtga aatacagaaa ctacctactc gcgacccggc ctcaattccg       600
     gagagtgatc gtagtaaggc agttaatgac gtcggcgtta tggaaagaga aggttttgag       660
     gccgtcctca aacgaagcga gaatcgattc aataaactga aagagaaatg catgtcagaa       720
     ttgtccagcg taaatgttac gaattgcggt tgggagtccg ggaggccgaa agctcaactt       780
     gctgacagcc tcaagggtga tgcttcaaac attttcactc gcccctccat ggatgcactc       840
     cttgtgcgca attatgcgcc tgaaagcaat aatttagcga ccgctgaaga attggcaaag       900
     atttccgcca aagtgcaagc actgggcgca cctgaagaat gtttggctga agttttctgg       960
     gacatctgta tgtattgtac aactgcggga agctctccaa atgtgaatcc taaagggacc      1020
     atatctgtgg gaggtaaggt cgtgacgaga gatatggtag tggccgttat caaagaattt      1080
     tctacattac gccaagtttg ccgttgttat gcgccagttg tgtggaacta catgttacta      1140
     aacgagcaac cgccggctaa ttgggatgcc aaaggtttca ctgagaatac gaagtatgct      1200
     gctttcgaca cttttgatgc cgtgacaaat aaagctgcga ttcaaccgct ggagggactc      1260
     atcagagcac ccaccgacgc ggaacgaatt gctttcgcaa cgcacaagaa gttggctctg      1320
     gcaaaaaatg ctcaaaattc tcgctacgcc aatacttctg cagaagtcac gggtggtttc      1380
     ttcggctgtt tcccaaagaa taatttccga gaaaatcgat gttgatcaag caaagaactt      1440
     accgtaggtt actgcgtgct atatttaaat tacatactaa taagaattgt gtggatgtga      1500
     tagacatcat cgtgaataaa atagtgtgtg aaagggcagg tgcctcatcc tatgctcgcg      1560
     ctcgtagagc gaagagcatc ggtaggtgcc cccgctgtta tcggtgttca ccaggtttta      1620
     ctttcactaa aaactgtgac accagaactt gtgttcccgg cattagctat aatgataaag      1680
     tcaaggcgtt tatagttgat ggtgtaacga tgtgaaacct ttctataagc cttgagtgtt      1740
     gcccataaaa cctaaataat gtataagtgg gaacgtataa aataatttgt ttttaaaata      1800
     ttttcgcaat                                                             1810
//