ID AJ277269; SV 1; linear; genomic RNA; STD; VRL; 2389 BP. XX AC AJ277269; XX DT 07-APR-2000 (Rel. 63, Created) DT 07-APR-2000 (Rel. 63, Last updated, Version 1) XX DE Tomato aspermy virus 3a gene and cp gene for capsid protein, genomic RNA, DE strain 1 XX KW 3A gene; 3A protein; capsid protein; cp gene. XX OS Tomato aspermy virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2389 RA Moreno I.M.; RT ; RL Submitted (05-APR-2000) to the INSDC. RL Moreno I.M., Departamento de Biotecnologia, E.T.S.I.Agronomos, Universidad RL Politecnica de Madrid, Ciudad Universitaria s/n., Madrid, 28040, SPAIN. XX RN [2] RX DOI; 10.1094/MPMI.1997.10.2.171. RX PUBMED; 9057323. RA Moreno I.M., Bernal J., Garcia de Blas B., Rodriguez-Cerezo E., RA Garcia-Arenal F.; RT "The expression level of the 3a movement protein determines differences in RT severity of symptoms between two strains of tomato aspermy cucumovirus"; RL Mol. Plant Microbe Interact. 10(2):171-179(1997). XX DR MD5; c49c40e693493476e15237e2634f48fc. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2389 FT /organism="Tomato aspermy virus" FT /strain="1" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:12315" FT 5'UTR 1..89 FT CDS 90..932 FT /gene="3a" FT /product="3a protein" FT /function="cell-to-cell movement" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9IV59" FT /protein_id="CAB86882.1" FT /translation="MAFSGTSRTLTQQSSAASTDELHNILFSRRAIQEMATKCDLGRHH FT WMRADNAVCVRPLVPETTSNLLTRWFVSGYEAGELPSKGYMSIPQVLCAVTRTVTSDAE FT GSLRIYLADLGDKERAPIDAQVVSLHNRDLPAIVSFHPTYDCPMEQLNGVGRCFALVIE FT RYGYIGHNGTTASVCSNWQPKFSSKNNNYKPAAAGKTLVLPYDRLSELSGPSAVARLLK FT SQLNMSASPYFQLPGIPVAQRAIGSESEDLEKSTGGQPNARVDSEPQVFSKPVVVNGI" FT misc_feature 933..1226 FT /note="intergenic region" FT CDS 1227..1883 FT /gene="cp" FT /product="capsid protein" FT /function="structural" FT /db_xref="GOA:Q88619" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:Q88619" FT /protein_id="CAB86883.1" FT /translation="MAQNGTGGGSRRPRRGRRNNNNNNSTARDKALLALTQQVNRLANI FT ASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKV FT SCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPN FT NKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV" FT 3'UTR 1886..2389 XX SQ Sequence 2389 BP; 589 A; 548 C; 560 G; 692 T; 0 other; gtttaccaac caacaaacca ctactgtata tatatatctg tgtgtgtgtg tgtgtgtgtg 60 tgtgtgtgtt gtgtgtgtgt aatcctccta tggcattttc aggtacaagt cggactctaa 120 cacaacagtc ctctgcggca tcaactgatg agctacataa catattattt agccgcagag 180 ccatccaaga gatggcgaca aaatgcgatc tcggtcgcca ccactggatg cgcgccgata 240 atgcggtgtg tgtgcgaccc ctcgttccag aaaccacgtc caatctactg acgcggtggt 300 tcgtctccgg gtatgaagct ggagagttac catccaaggg atatatgagc atccctcaag 360 ttctttgcgc cgtcaccaga acagtcactt cagatgctga aggttccctt cgcatatatc 420 tagctgatct cggtgataag gaacgtgcac ctatcgatgc acaagtcgtc agcttacata 480 accgcgatct ccctgccatt gtctccttcc atcctactta tgattgtcct atggaacagt 540 tgaatggagt cggtaggtgt tttgcacttg ttatagaaag atacggttat attggacata 600 acggaactac cgcgagcgtg tgtagtaact ggcaaccgaa gttttcttcg aagaataata 660 attacaagcc agccgccgca ggtaagactc tagtactacc ctatgacaga ttatctgagc 720 tttcgggacc atcagccgta gccagattac tgaaatcgca gctcaatatg tcagcatccc 780 cgtatttcca gttacctggg ataccggtgg ctcaacgtgc gataggtagt gagtctgagg 840 atcttgagaa atcgacagga ggccaaccta acgctagggt tgattcggaa ccgcaggtgt 900 tttcaaagcc ggttgtggtg aacggtattt gagcctgttg ttatatatat acgtgtattt 960 gtgttatgtg tatagtatat atatgcaagt gtaaatcgtt gtgttgtaga ttgatcactt 1020 gagttccatg gattgggaag ggtacacatc tggtttatca aagcccgtga cattactttt 1080 tgggttcaat tcccattagt ccctgtcagg ttcctttatc ttcacggatg cttctccatg 1140 atgtagcgtt taagtatcaa tctgttgttg tttgtgctta aatttttcac ttattgttag 1200 tgtttcacca ccgtcacaca ctctagatgg cccaaaacgg tacgggagga ggaagccgac 1260 gtccacgtcg tggtcgtcgt aataataaca acaacaactc gactgctcgt gataaagctc 1320 ttttggcttt gacgcagcaa gtcaatcgct tagcgaatat agcttcctct agtgcgccat 1380 cccttcaaca tccgactttt attgctagca agaagtgtcg tgcaggttat acttacactt 1440 cgttggatgt tcgaccgact agaactgaga aggacaagag tttcggtcaa aggttaatta 1500 tccctgtacc cgtgtctgaa tatcctaaga agaaggtctc atgtgtgcaa gtgagactga 1560 acccatcccc aaagttcaat tctacgattt gggtctcgct tcgtcgtctg gacgaaacga 1620 ctcttcttac ttctgaaaac gtgtttaaac tgttcaccga cggccttgcg gccgttctta 1680 tttatcagca cgttcccacc ggtattcaac ctaacaataa gatcaccttc gacatgtcta 1740 atgtcggtgc tgagatcggc gatatgggta aatatgccct aatagtctat tctaaagacg 1800 atgtcctcga agccgatgaa atggtgatcc acattgatat agagcatcag cgtattcctt 1860 ccgcttcaac gctcccggtg tgattcgaca cgcatgcacg acgtccgaag acgttaaact 1920 acgcttgaac tgtgttcgag tgtctgagtt ggtagtattg ctctaaacta cctgaagtca 1980 ctaaatgctt atgcagtgaa cgggttgtcc atccagctaa cggctaaaat ggtcagtcat 2040 atcgtgagat atgccgtcgg tctttttagt ccgaagacgt taaactacgt tcgaaccgtg 2100 ttcgaatgtc tgagttggta gtattgctct aaactatctg aagtcactaa acgcttgtgc 2160 ggtgaacggg ttgtccatcc agctaacggc taaaatggtc agtcatgtcg gaagacatgc 2220 cgtcggtctt tgatcgatga ggtgcctttg aaccctttat cccggggttc ttcggaaggt 2280 gagacttgaa ttccatgtag agtctcgccg tgcacggtat cacactgatg ataccttcag 2340 agtgcaggca tcgcctacgg tttttccgta ggttccccta ggggtccca 2389 //