ID AJ277268; SV 1; linear; genomic RNA; STD; VRL; 2386 BP. XX AC AJ277268; XX DT 07-APR-2000 (Rel. 63, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Tomato aspermy virus 3a gene and cp gene for capsid protein, genomic RNA, DE strain V XX KW 3A gene; 3A protein; capsid protein; cp gene. XX OS Tomato aspermy virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2386 RA Moreno I.M.; RT ; RL Submitted (05-APR-2000) to the INSDC. RL Moreno I.M., Departamento de Biotecnologia, E.T.S.I.Agronomos, Universidad RL Politecnica de Madrid, Ciudad Universitaria s/n., Madrid, 28040, SPAIN. XX RN [2] RX DOI; 10.1094/MPMI.1997.10.2.171. RX PUBMED; 9057323. RA Moreno I.M., Bernal J., Garcia de Blas B., Rodriguez-Cerezo E., RA Garcia-Arenal F.; RT "The expression level of the 3a movement protein determines differences in RT severity of symptoms between two strains of tomato aspermy cucumovirus"; RL Mol. Plant Microbe Interact. 10(2):171-179(1997). XX DR MD5; a269ced3be79be61e1239bb707689380. DR EuropePMC; PMC416521; 15163757. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2386 FT /organism="Tomato aspermy virus" FT /strain="V" FT /mol_type="genomic RNA" FT /country="Australia" FT /db_xref="taxon:12315" FT 5'UTR 1..89 FT CDS 90..932 FT /gene="3a" FT /product="3a protein" FT /function="cell-to-cell movement" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9IV60" FT /protein_id="CAB86880.1" FT /translation="MAFSGTSRTLTQQSSAASTDELHNILFSRRAIQEMATKCDLGRHH FT WMRADNAVCVRPLVPETTSNLLTRWFVSGYEAGELPSKGYMSVPQVLCAVTRTVTSDAE FT GSLRIYLADLGDKERAPIDAQVVSLHNRDLPAIVSFHPTYDCPMEQLNGVGRCFALVIE FT RYGYIGHNGTTASVCSNWQPKFSSKNNNYKPAAAGKTLVLPYDRLSELSGPSAVARLLK FT SQLNMSASPYFQLPGIPVAQRAIGSESEDLEKSTGGQPNARVDSEPQVFSKPVVVNGI" FT variation 100 FT /replace="a" FT /note="spontaneous mutation that introduces stop codon" FT misc_feature 933..1227 FT /note="intergenic region" FT CDS 1228..1884 FT /gene="cp" FT /product="capsid protein" FT /function="structural" FT /db_xref="GOA:Q88619" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:Q88619" FT /protein_id="CAB86881.1" FT /translation="MAQNGTGGGSRRPRRGRRNNNNNNSTARDKALLALTQQVNRLANI FT ASSSAPSLQHPTFIASKKCRAGYTYTSLDVRPTRTEKDKSFGQRLIIPVPVSEYPKKKV FT SCVQVRLNPSPKFNSTIWVSLRRLDETTLLTSENVFKLFTDGLAAVLIYQHVPTGIQPN FT NKITFDMSNVGAEIGDMGKYALIVYSKDDVLEADEMVIHIDIEHQRIPSASTLPV" FT 3'UTR 1887..2386 XX SQ Sequence 2386 BP; 586 A; 553 C; 560 G; 687 T; 0 other; gtttaccaac caaccaacca ctactatcta tctatctgtg tgtgtgtgtg tgtgtgtgtg 60 tgtgtgtgtt gtgtgtgtgt aatcctccta tggcattttc aggtacaagt cggactctaa 120 cacaacagtc ctctgcggca tcaactgatg agctacataa catattattt agccgcagag 180 ccatccaaga gatggcgaca aaatgcgatc tcggtcgcca ccactggatg cgcgccgata 240 atgcggtgtg tgtgcgaccc ctcgttccag aaaccacgtc caatctactg acgcggtggt 300 tcgtctccgg gtatgaagct ggagagttac catccaaggg atatatgagc gtccctcaag 360 ttctttgcgc cgtcaccaga acagtcactt cagatgctga aggttccctt cgcatatatc 420 tggctgatct tggtgataag gaacgtgcac ctatcgatgc acaagtcgtc agcttacata 480 accgcgatct ccctgccatt gtctccttcc atcctactta tgactgtcct atggaacagt 540 tgaatggagt cggtaggtgt tttgcacttg ttatagaaag atacggttat attggacata 600 acggaactac cgcgagcgtg tgtagtaact ggcaaccgaa gttttcttcg aagaataata 660 attacaagcc agccgccgca ggtaagactc tagtactacc ctatgacaga ttatctgagc 720 tttcgggacc atcagccgta gccagattac tgaaatcgca gctcaatatg tcagcatccc 780 cgtatttcca gttacctggg ataccggtgg ctcaacgtgc gataggtagt gagtctgagg 840 atcttgagaa atcgacagga ggccaaccta acgctagggt tgattcggaa ccgcaggtgt 900 tttcaaagcc ggttgtggtg aacggtattt gagcctgttg ttatatatat atgtgtattt 960 gtgttatgtg tatagtatat atatacaagt gtaaatcgtt gtgttgtaga ttgatcactt 1020 gagttccatg gattgggaag ggtacacatc tggtttatca aagcccgtga cattactttt 1080 tgggttcaat tcccattagt ccctgtcagg ttcctttatc ttcacggatg cttctccatg 1140 atgtagcgtt taagtatcaa tctgttgttg tttgtgctta aatttttcac ttattgttag 1200 tgtttcacca ctgtcacaca ctctagaatg gcccaaaacg gtacgggagg aggaagccga 1260 cgtccacgtc gtggtcgtcg taataataac aacaacaact cgactgctcg tgataaagct 1320 cttttggctt tgacgcagca agtcaatcgc ttagcgaata tagcttcctc tagtgcgcca 1380 tcccttcaac atccgacttt tattgctagc aagaagtgtc gtgcaggtta tacttacact 1440 tcgttggatg ttcgaccgac tagaactgag aaggacaaga gtttcggtca aaggttaatt 1500 atccctgtac ccgtgtctga atatcctaag aagaaggtct catgtgtgca agtgagactg 1560 aacccatccc caaagttcaa ttctacgatt tgggtctcgc ttcgtcgtct ggacgaaacg 1620 actcttctta cttctgaaaa cgtgtttaaa ctgttcaccg acggccttgc ggccgtcctt 1680 atttatcagc acgttcccac cggtattcaa cctaacaata agatcacctt cgacatgtct 1740 aatgtcggtg ctgagatcgg cgatatgggt aaatatgccc taatagtcta ttctaaagac 1800 gatgtcctcg aagccgatga aatggtgatc cacattgata tagagcacca gcgtattcct 1860 tccgcttcaa cgctcccggt gtgattcgac acgcatgcac gacgtccgaa gacgttaaac 1920 tacgcttgaa ccgtgttcga gtgtctgagt tggtagtatt gctctaaact acctgaagtc 1980 actaaatgct tatgcagtga acgggttgtc catccagcta acggctaaaa tggtcagtca 2040 tatcgtgaga tatgccgtcg gtctacgtcc gaagacgtta aactacgctt gaaccgtgtt 2100 cgagtgtctg agttggtagt attgctctga actacctgaa gtcactaaat gcttatgcag 2160 tgaacgggtt gtccatccag ctaacggcta aaatggtcag tcatatcgtg agatatgccg 2220 tcggtctttg atcgatgagg tgcctttgaa ccctttatcc cggggttctt cggaaggtga 2280 gacttgaatt ccatgtagag tctcgccgtg cacggtatca cactgatgat accttcagag 2340 tgcaggcatc gcctacggtt ttccgtaggt ccccctaggg gtccca 2386 //