ID AJ277091; SV 1; circular; genomic DNA; STD; VRL; 7687 BP. XX AC AJ277091; XX DT 26-JUL-2001 (Rel. 68, Created) DT 16-DEC-2005 (Rel. 86, Last updated, Version 2) XX DE Sugarcane bacilliform IM virus complete genome, isolate Ireng Maleng XX KW coat protein; movement protein; ORF1; ORF2; protease; KW reverse transcriptase; RNase H. XX OS Sugarcane bacilliform IM virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7687 RA Geijskes R.J.; RT ; RL Submitted (24-MAR-2000) to the INSDC. RL Geijskes R.J., Biotechnology, Bureau of Sugar Experiment Stations, 50 RL Meiers Road (P.O. Box 86) Indooroopilly, Queensland, 4068, AUSTRALIA. XX RN [2] RA Geijskes R.J., Braithwaite K.S., Harding R.M., Dale J.L., Smith G.R.; RT "Sequence analysis of an Australian isolate of Sugarcane bacilliform RT badnavirus"; RL Unpublished. XX DR MD5; 1df1e761720a7b0455d370b9f4e91adf. DR EuropePMC; PMC4302606; 25526789. DR EuropePMC; PMC5769356; 29334902. XX FH Key Location/Qualifiers FH FT source 1..7687 FT /organism="Sugarcane bacilliform IM virus" FT /isolate="Ireng Maleng" FT /mol_type="genomic DNA" FT /country="Australia:North Queensland" FT /db_xref="taxon:362398" FT CDS 616..1173 FT /product="hypothetical protein" FT /function="unknown" FT /note="OR1F" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q91DS9" FT /protein_id="CAC44905.1" FT /translation="MKSEAEWETQFNTWKNSHTFENANQELILGTKISNLDLNHNIRTT FT CFRVDLGYKVLLTSQQKAQDHRTELFSAIRKHTVEHSKQLKLVAEKAEQSLIIQKEQRA FT RLKRIEDALSTFSREIHNLRVEYLKRRPLSKEDVAELVLAISEQPKFIEKQTELLLEQV FT KKLVEAVHEEVETVHRMVKRIS" FT CDS 1173..1544 FT /product="hypothetical protein" FT /function="unknown" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q91DS8" FT /protein_id="CAC44906.1" FT /translation="MSINEPAYAQALAKTKTIFGESGEGFVSATPGATTAAKQLNTVIE FT LILQLHGKLKALEDKLQDLKEDISKKADKPSTSGFDKQFDDLAKKIEGLKTGSEPKKPI FT ERGKLKVKANPFDLLKKIQ" FT CDS 1544..7282 FT /product="polyprotein" FT /note="movement protein, coat protein, protease, reverse FT transcriptase and Rnase H" FT /db_xref="GOA:Q91DS7" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q91DS7" FT /protein_id="CAC44907.1" FT /translation="MAQVVRGTGSSTVLEDGAVLDDQIRDYRRSQHLKHELSRKTAKAL FT SWVKTTDDNPREQTLEMVMSPEAELERSLKKRARAFPAEVIYSPRRDDIHHRVFVGSSS FT QDVMIVDDNQIDMTYIKEESFEKLEQAGFRYIHLGAMAIRIQPLHAAWSGKLAFIVLRD FT VRNSPPTTLGAMEVDLSKGAQLIYVLPNFMCTIKDFYHGIQLSIKTKGYEGWQGEANLH FT LERLITGRLSNTSNVAFKYKIDGVTAYLKTNGIKAIDAKKESTKKIRGGEWNIQPSTVE FT VVMEPRDMMQSQNFDGTTSFRFTNFQASASRPAPAYNDEDEVEMEAHMALCEELDEELT FT DQQWIDRYLSEYSAQQKVVGEIDEEEEEDIITTFLSAIPDEEEAYPAEEIEEEYPAIKR FT LEELMRTRVIVKEVPEKSEQPQEAKMASSEGSSAIWQPGTMDLDGNFPGYAPAQGATGW FT DNSASSSKKNYGGYSRKFKNESEFFNLPSAMATSGAILVLTMNNYAKEFERWQSINTNL FT LATQSFETADDKITRIENLLGETEKLMFQTWRMAFPNAFDTLRGQALGTNGTANVFAQI FT KRVLLGEVPEQGTTGVQDAAYKKIKSLVCTEMTYPALMRYMVGYRNLAARSGRAWANNE FT LTNEFFTKLPGKLGDKVKEAFVAKYPSVERHVPAAIRFTYDYLEEICTENNFQKQLRSL FT NFCKGFPVVNPVGTKKYGKRYGTRKARSYRGKPHSSHVRIERTRYLKQRKDGKGEKKCR FT CFVCGSTEHLMKDCKSPMKRQDRVNLAREIDIPDNYDIVSVGFDEEDTEDIYSVSENEE FT NQAHLGVSYEDPQLPTIPTSFEEWEEYYKEEFTLMAEVDDSSDEEKGPFLVGPKDGFRH FT QMIVSQKQYKCTHDWEYQKDRTRPCKRCLKTVSKGEYAYCKICKVGVCNDCALWCYQIK FT APTCSQEKKPSSSINYEKLARQLLLENSKLKEEKKILIEELNKEIKARQEAEKNKAVFV FT EETSSEVNDEIEMWKSKAELYEALYHEALNKPSSSMIKEGLYQTQITHLTKELRQLEAG FT MEVNQAVESEEEDEVEEVTLMASAVKDQMFRFPVVIEVPEVGKVQLTALLDTGATRSCI FT NKPFIEDKMLQDTAFKVKISGVNSVTYLDKQVKDGAKLWAGSSWFRLPLTYVGNMHMGE FT KTQMLIGCNFLQSLAGGVRLEGRTVTFYKYISSIQANEFLQAEVEEINIATSEGGFIDK FT PFMSKNKQLIEEMKEQGYMGEDTLKHWEKNKVKCKIELINPDLIIKDKPITMLTIQTKE FT AMRKHVDALLARGVIRKSNSPHRTNAFIVESGTSVDPVTKKEIRGKPRLVFNYKRLNDN FT TWPDQYSLPGINALLKNVARAKIFSKFDLKSGFHQVAMDPESIPLTAFTAYNELYEWLV FT MPFGLKNAPAVFQRKMDDCFRGTERFIAVYIDDILVFSETEEKHAEHLWKMLQICKKNG FT LILSPSKYKIGVKRVDFLGSTIGDNQLAVQEHIVSKIADFDEERLKTKEGLKSWLATLN FT YARNHIKDMGKLLGPLYPKTSEKGAKGLNSEDWKLISRIKTMVRSLPSLTIPPEDAYII FT IETDACATGWGAVCKWKKSKADPRSSELICRYASGKFDKPKGTCDAEIYGVMNGLEKMR FT LFYLDKREITVRTDSAAIERFYNKSVEHKPSEIRWIRFMDYITGAGPTIVIEHIKGKHN FT GLADILSRLKAKLAEAPSEEVVLLAKALKEIAYYPDHPQVPKLIEWGKQILDPFPKFKK FT DMFERTEHIMMATQEPTLLCGCRKPAIMLTSGTRLNPRRRFYKCAMNICHCWYWADLLE FT EYVQERIEDFMVENFDKKAKLDEPSSSNVHHDDYEEHRSSVIDRPRPTDDHFRPWGDVT FT YWLNKEAEECHTRGDNVEGAEDAVDLTDVSNDDQWRRS" XX SQ Sequence 7687 BP; 2577 A; 1468 C; 1842 G; 1800 T; 0 other; tggtatcaga gcgaggtatg atttacttat cagttatgtt ctaagtaagt tagataggga 60 gccgagggct ctgctgatga gtttaaggac aactagctgt gcaagtttca atagatgata 120 cgtcgaaagg ttgaatatct tccatcctgt ttacactacg aactagtggt tgttctaggg 180 gagaacgtta atgcggggca agcttagttc attctgaaaa tcaggtagac tctggtctag 240 ataacattga tagttagtgc aaaggggact agatctggca aggtaaaagt acccgtctag 300 gcaggtggcc gctcaagggg aagagaaacc tagagatcaa aagttctatt gcaatactat 360 ctatcagttt tatcttgatt gtatgctact atctgagact aagattcatc actaagaact 420 acctacgcaa gccttcctga atccgccact atagtagtat cctagtaaac aaggaaaaga 480 aggaactata tacctgtaag acttaagtct ataaggaacc gctggaactg gctagaagtc 540 tggagactct gaaagcatcc cgaggtaaac cctatctcct attagaacgt tgatactgat 600 agtatctgcc atcgcatgaa atctgaagcc gagtgggaaa cacagtttaa cacttggaaa 660 aactctcata ccttcgaaaa cgctaaccaa gagcttattc ttggaacaaa aatatctaat 720 ttagatttga atcacaatat ccgtactact tgttttagag tagatcttgg atacaaagtt 780 ctgctaacct cgcagcagaa ggctcaggac catcgcacag agttgttttc tgccatcaga 840 aagcacacgg tcgagcacag caagcagctc aagcttgttg ctgagaaagc tgaacaatcg 900 ctgatcatcc agaaggaaca gcgcgcacgt ctgaagcgga tcgaagacgc cctatcgacc 960 ttcagtaggg aaatccacaa ccttcgtgtg gaatacctga agcggaggcc tttatctaag 1020 gaagacgttg ctgaattggt gctcgccatc tccgagcaac caaaatttat cgagaagcag 1080 actgagctac ttcttgagca agtcaagaag ttggttgaag ctgtccacga ggaggttgag 1140 acggttcacc gcatggtgaa gcgtatcagc taatgagcat caacgaacca gcatacgctc 1200 aggcccttgc aaagaccaag accatctttg gtgaatctgg tgaagggttc gtatctgcga 1260 ctccaggagc tacgacagca gcaaagcagc tcaatactgt tattgagtta attctacagc 1320 tgcacgggaa gctcaaagct cttgaagaca aacttcaaga cctgaaggaa gatatctcta 1380 agaaggcgga caaacccagt acttccgggt ttgacaagca gttcgacgat cttgctaaga 1440 agatcgaagg actgaaaaca gggtccgaac ccaagaagcc tattgaacga ggaaagctca 1500 aggtcaaagc taaccccttt gatcttctca agaagattca gtaatggctc aagtggttcg 1560 agggactggc tcttctacag tcctagaaga tggggcagtt cttgatgacc agatcagaga 1620 ctacagaagg tctcaacatc tgaagcatga gttatcaaga aagacggcaa aagctctaag 1680 ttgggtaaaa acaactgatg ataacccaag agagcaaact ctagagatgg tgatgagtcc 1740 agaagctgag ctggaaagat cactgaagaa gagggctagg gcattcccag ccgaagtgat 1800 ctattcccca agaagggacg acatccatca cagagttttt gttggatcct caagccaaga 1860 tgtcatgatt gttgatgaca atcaaattga tatgacatat attaaagagg aaagcttcga 1920 gaagctagag caagctggct tccggtacat tcatctcgga gcaatggcta ttagaataca 1980 gccattacat gcagcctggt caggaaagtt ggcatttatt gtcctcagag atgtgaggaa 2040 cagcccgcca acaacattgg gagctatgga ggttgatttg agcaaaggag cacaactcat 2100 ctatgtgcta ccaaacttta tgtgcaccat aaaggatttc tatcatggca ttcagctctc 2160 catcaagacc aaaggctatg aagggtggca aggtgaagct aacttgcacc ttgaaaggtt 2220 gatcactggc agactctcta acacatctaa tgttgcattc aagtacaaga tagatggtgt 2280 tacggcttat ttgaagacca atggcatcaa agccattgac gcaaagaaag agtccacgaa 2340 gaagataaga gggggagaat ggaacataca accctcaaca gttgaagtgg tcatggaacc 2400 tagagacatg atgcagagcc aaaactttga tggcacaaca tcatttaggt tcaccaactt 2460 ccaagcctca gcaagcaggc cggcaccggc atataatgat gaggatgaag ttgaaatgga 2520 ggctcacatg gctttatgtg aggagttaga cgaagaattg accgatcaac agtggattga 2580 tcgctattta tcagagtact ctgcccagca gaaggtggta ggagaaattg atgaagaaga 2640 agaagaggat ataatcacaa cttttctatc agcaatccct gatgaagaag aggcctaccc 2700 agctgaggaa atcgaagaag agtacccagc tatcaagaga ctcgaggagc tcatgagaac 2760 tcgagtaatt gtgaaagaag taccagagaa atctgagcag ccgcaagaag caaagatggc 2820 atcctctgaa ggatcatctg caatatggca gcctggtaca atggatctag atggaaactt 2880 ccctggctat gcaccagctc aaggagctac tggatgggac aattctgcat catccagcaa 2940 gaagaactat ggaggatatt ccaggaagtt caagaatgag tcggaattct ttaatctacc 3000 atcagcaatg gcaacaagtg gggctattct agtcctaaca atgaataact atgccaagga 3060 gtttgaaagg tggcaatcaa tcaacacaaa tctgttagcc acacagagct ttgaaacagc 3120 tgatgacaag attacaagaa tagagaatct tttgggagaa acagagaaac tgatgtttca 3180 aacatggcga atggccttcc caaatgcatt cgatactctc agagggcaag cccttggtac 3240 caatggaact gcaaatgtat ttgcacaaat caagagagta ttgttgggag aagttcctga 3300 acaaggaaca actggtgtac aagatgcagc gtacaagaag atcaaatctc ttgtatgtac 3360 agagatgaca taccctgctc tcatgagata catggttggg tatagaaatc ttgctgcaag 3420 atctggaaga gcttgggcaa ataatgagct taccaatgaa ttcttcacca agttacctgg 3480 caagttaggt gacaaagtga aagaagcttt tgtggccaag tatcccagcg tggaaaggca 3540 tgttcctgct gcaataaggt tcacatatga ctaccttgaa gaaatatgca cagagaacaa 3600 cttccagaaa caactaagaa gcctgaactt ctgtaaaggc tttccagttg tcaatccagt 3660 gggaacaaag aagtatggaa agaggtatgg cacaagaaag gcaagatctt atagaggcaa 3720 acctcacagt tctcacgtca gaatagagag aactcgctac ctcaagcaaa gaaaagatgg 3780 aaaaggcgag aagaagtgca gatgttttgt ctgtggctct acagaacatc tgatgaaaga 3840 ttgcaaatcc ccaatgaaga ggcaggacag agttaatctg gctcgagaaa tcgatatacc 3900 agataattat gacattgtat cagtgggatt tgatgaagaa gatactgaag acatctattc 3960 agtatcagaa aatgaagaga atcaagcaca cttaggtgta tcttatgaag acccgcagct 4020 gccaactatt cccacaagct ttgaagaatg ggaagaatac tataaagaag agtttacatt 4080 aatggcagaa gtagatgatt catctgatga agagaagggt ccattccttg taggaccgaa 4140 agatgggttt agacatcaaa tgatagtctc ccagaagcag tacaagtgta cacatgattg 4200 ggagtatcag aaggatagaa ctcgtccctg caagcggtgt ttgaagacag tgagcaaagg 4260 agagtatgct tactgcaaaa tctgcaaagt aggtgtatgc aatgactgtg cactttggtg 4320 ttatcagatc aaagcaccta catgctctca ggagaagaag cctagcagca gtataaatta 4380 tgagaagcta gcaagacagc tgctattaga gaatagcaag ctcaaggaag aaaagaagat 4440 tcttattgaa gagcttaaca aagagattaa agctagacaa gaagctgaaa agaacaaagc 4500 tgtgtttgtt gaagaaactt cctcagaagt gaatgatgag atcgagatgt ggaagtctaa 4560 ggctgagctg tatgaagctt tgtatcatga agccttgaac aaaccaagca gtagcatgat 4620 aaaagaaggg ttatatcaga cccagatcac tcatcttact aaagaactca gacaactaga 4680 agctggcatg gaagtaaatc aagcagttga gtctgaagaa gaagatgaag tggaagaagt 4740 gacattaatg gcttcagcag taaaggatca aatgttcaga ttcccagtag taattgaagt 4800 accagaagtg gggaaagtcc agttaactgc tctgctagat acaggtgcaa caagatcctg 4860 tataaacaag ccatttatcg aagacaaaat gctccaagat acagcattta aagtgaagat 4920 ctctggagta aactcagtca cttatcttga caagcaagtg aaagatggag ccaagctatg 4980 ggctggaagt agctggttca gactccctct cacatatgtc ggaaatatgc atatgggtga 5040 gaagacgcag atgctaatag gatgcaattt tctgcaatcc ttagctggag gagtcagatt 5100 ggaaggtaga acagtaacgt tctacaagta catctcaagt atccaagcca acgaattctt 5160 gcaagcagaa gttgaggaaa tcaatattgc aacatctgaa ggtggattca ttgacaaacc 5220 cttcatgagc aagaacaagc agcttattga agaaatgaaa gagcaaggat acatgggcga 5280 agatacattg aagcattggg aaaagaataa ggtgaaatgc aagattgagc ttatcaatcc 5340 agatctcatt atcaaggata agccaattac aatgcttaca attcaaacga aagaagctat 5400 gaggaagcat gttgatgctc tcctagcaag aggagtaatc aggaaaagca acagtccaca 5460 tcggactaac gcttttattg tggagtcagg cacatccgta gacccagtca ccaagaagga 5520 gatcagaggc aagccaagac tggtgttcaa ctacaaaagg ctgaatgaca acacatggcc 5580 tgatcagtac tcactgcccg ggatcaatgc attactgaaa aatgtagcaa gagccaagat 5640 cttctcaaag ttcgatctga agagtggctt tcatcaagtt gcaatggatc cagagagtat 5700 acctctcacg gcattcacag catataatga gctatatgaa tggttagtga tgccatttgg 5760 gttaaaaaat gcacctgcag tgttccagag gaagatggat gactgtttca gaggaaccga 5820 aaggttcatc gcagtctata ttgatgatat cctggtgttt tcagaaactg aagagaaaca 5880 tgctgaacat ctgtggaaga tgctgcagat ctgtaagaag aatgggttaa tcttaagccc 5940 ctccaagtac aaaattggag taaaaagagt ggattttctt ggttcaacaa ttggcgataa 6000 tcagctagct gtacaagaac atattgtgtc aaagatagct gatttcgatg aagagaggct 6060 gaaaaccaag gaaggactga agagctggct ggcaacattg aattatgcca gaaatcacat 6120 caaggatatg gggaaattac ttggaccctt atatccgaag acctcagaga agggagcaaa 6180 aggattaaat tctgaagact ggaaattgat cagcagaatc aaaacaatgg tcagaagtct 6240 gccaagtctg actattccac cagaagatgc atatatcata attgaaactg atgcatgtgc 6300 aactggatgg ggagcagtct gcaaatggaa gaaatccaaa gctgatccaa gaagttctga 6360 gctcatatgc cgatatgcaa gcggcaagtt tgataaaccc aaaggaacat gtgatgctga 6420 aatctatggg gttatgaatg ggctagagaa gatgagactc ttttatcttg ataaaagaga 6480 aattactgtc agaactgata gtgcggcaat agagagattc tacaacaaga gtgtagaaca 6540 taaaccttcg gagatcaggt ggataaggtt tatggactat atcactggag ctgggccaac 6600 gattgttatt gagcacatca aagggaagca caatggctta gcggatattc tctcaagact 6660 caaagcaaaa cttgctgaag caccaagtga agaggtagtg ttgcttgcaa aagcactaaa 6720 ggaaattgca tactacccag atcatccgca agttccgaag cttattgaat ggggaaaaca 6780 aattcttgat ccattcccca aattcaagaa ggatatgttt gaaagaactg aacatatcat 6840 gatggcaaca caagagccta cgctactatg tggatgcagg aagcctgcaa tcatgttaac 6900 atcaggaaca aggcttaatc ctcgtagaag attttacaag tgtgccatga atatctgcca 6960 ctgctggtat tgggcagatt tacttgaaga atacgtgcaa gagaggatcg aagatttcat 7020 ggttgaaaac ttcgacaaga aagcaaagct ggatgaacca agttcatcaa acgttcacca 7080 tgatgattat gaagaacacc gttcgagtgt catcgacagg ccaaggccaa cagatgatca 7140 tttcagacca tggggggatg ttacatactg gctgaataaa gaagcagaag agtgccacac 7200 aaggggcgac aacgtcgaag gcgcagaaga cgcagtcgat ctcactgacg taagcaatga 7260 cgaccagtgg aggagatcgt aagcaatgac gtatggagcg tggaggaccc atgaaagcac 7320 tgagaaggca tctcaacttt cggtgtgtga gtgcgcatcc tatgcgatgc tttgtacctt 7380 tgttagctgt gtgtgtcctt ttggcatctg tgccacttta cctttgtcgg ccacgttgcc 7440 tttgcttagc atctacgcaa gcatagcgct cggctggtgt gtgttccctc tgcctatata 7500 aggcatggtt gtatgactct tacactcatc ggtagttcac cacatgagta tttgagtcaa 7560 gtttggcttg aataataaga attacacctt tccgcaatat ttcgcactct tgatcctatg 7620 atccagtagg ttgagaacaa gaccgaagtt catagttgag atcctaaagg gaattcgcgt 7680 gtctccg 7687 //