ID   AJ276859; SV 1; linear; mRNA; STD; VRL; 1326 BP.
XX
AC   AJ276859;
XX
DT   22-MAY-2001 (Rel. 67, Created)
DT   24-APR-2003 (Rel. 75, Last updated, Version 4)
XX
DE   Infectious salmon anemia virus mRNA for haemagglutinin protein (HA gene),
DE   isolate 390/98
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KW   HA gene; haemagglutinin protein.
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OS   Salmon isavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Isavirus.
XX
RN   [1]
RC   Revised by [3]
RA   Snow M.;
RT   ;
RL   Submitted (22-MAR-2000) to the INSDC.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1128/JVI.75.11.5352-5356.2001.
RX   PUBMED; 11333916.
RA   Rimstad E., Mjaaland S., Snow M., Mikalsen A.B., Cunningham C.O.;
RT   "Characterization of the infectious salmon anemia virus genomic segment
RT   that encodes the putative hemagglutinin";
RL   J. Virol. 75(11):5352-5356(2001).
XX
RN   [3]
RP   1-1326
RA   Snow M.;
RT   ;
RL   Submitted (13-MAR-2001) to the INSDC.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
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DR   MD5; 19769130cb24fe2ef07d3e8a33770e97.
DR   EuropePMC; PMC114940; 11333916.
DR   EuropePMC; PMC1851003; 17394643.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1326
FT                   /organism="Salmon isavirus"
FT                   /segment="6"
FT                   /host="Salmo salar (Salmon)"
FT                   /isolate="390/98"
FT                   /mol_type="mRNA"
FT                   /country="United Kingdom:W Scotland"
FT                   /db_xref="taxon:55987"
FT   CDS             20..1186
FT                   /transl_table=1
FT                   /gene="HA"
FT                   /product="haemagglutinin protein"
FT                   /function="surface protein"
FT                   /db_xref="GOA:Q911Y4"
FT                   /db_xref="InterPro:IPR010408"
FT                   /db_xref="UniProtKB/TrEMBL:Q911Y4"
FT                   /protein_id="CAC39249.1"
FT                   /translation="MARFIILFLLLAPVYSRLCLRNYPDTTWIGDSRSDQSRVNPQSLD
FT                   LVTEFKGVLQAKNGNGLLKQMSGRFPSDWYTPTTKYRILYLGTNDCTDGPTDMIIPTSM
FT                   TLDNAARELYLGACRGDVRVTPTFVGAAIVGLVGRTDAITGFSVKVLTFSSPTIVVVGL
FT                   NGMSGIYKVCIAATSGNVGGVTLINGCGYFNTPLRFDNFQGQIYVSDTFEVRGTKNKCV
FT                   LLRSSSDKPLCSHIMRNVELDEYVDTPNTGGVYPSDGFDSLHGSASVRTFLTDALTCPD
FT                   IDWSRIDAASCEYDSCPKMVKDFDQTSLGNTDTLIMREVALHKEMISKLQRNITDVKTS
FT                   VLSNIFISMGVAGFGIALFLAGWKACIWIAVXMYKSRGRIPPSNLSFA"
XX
SQ   Sequence 1326 BP; 388 A; 244 C; 326 G; 367 T; 1 other;
     ggcatcatga cttgcaaaga tggcacgatt cataatttta ttcctactgt tggcgcctgt        60
     ttacagtcgt ctatgtctta gaaactaccc tgacaccacc tggataggtg actctcgaag       120
     cgatcagtcc agagtgaatc cacagtcttt ggatctggtg actgagttca agggggtgct       180
     gcaggccaaa aacggaaatg gacttttgaa gcagatgagt ggaaggtttc caagtgactg       240
     gtacacacct actacaaagt accggatcct atacttggga accaatgact gcactgacgg       300
     acctactgac atgatcatcc caacttcgat gacactggac aacgcggcaa gggagctgta       360
     cctgggagca tgcaggggag acgtgagagt gacgcctaca tttgtgggag cagcaattgt       420
     tggacttgtt ggacgaacag acgcaattac cggtttttcg gtgaaggtgt tgactttcag       480
     cagccctaca attgtagtgg tgggattgaa tggaatgtcc ggaatctaca aggtctgcat       540
     tgcagcaaca tctgggaatg tgggaggagt gacactgatc aacggatgcg gatatttcaa       600
     cacacctttg aggtttgaca atttccaagg acaaatctac gtgtcagaca cctttgaagt       660
     gaggggaacc aaaaacaagt gtgttctgct aagatcttct agtgataagc ctttgtgttc       720
     acacatcatg aggaacgttg agctagatga gtatgtagac acaccaaata cagggggtgt       780
     ttatccttct gatggttttg attcactaca tggttcagct tccgttagaa cgttcctcac       840
     tgatgcattg acatgcccag acattgactg gagtagaatt gatgctgctt cgtgtgaata       900
     tgacagctgc cctaagatgg ttaaagattt tgaccagaca agcttaggta acacagacac       960
     acttatcatg agggaggtag cattgcacaa ggagatgatc agtaaacttc agaggaacat      1020
     cacagatgta aaaacatctg tgttgagcaa catcttcatt tctatgggtg tagcaggttt      1080
     tgggattgct ctgttcctag caggttggaa ggcatgtatt tggattgcag tattnatgta      1140
     caagtctaga ggtagaattc caccatcgaa cctgtctttt gcttgattat gaaagaaaga      1200
     caactatgtt aaaagttaat gagtgtattc taatgtgatt ttaattttaa agatgtatgt      1260
     caaattattt ttggttgaag acgttcttga tgttgtacgt ttccaaaaaa aaaaaaaaaa      1320
     aaaaaa                                                                 1326
//