ID   AJ276858; SV 1; linear; genomic RNA; STD; VRL; 2069 BP.
XX
AC   AJ276858;
XX
DT   17-MAR-2001 (Rel. 67, Created)
DT   17-MAR-2001 (Rel. 67, Last updated, Version 1)
XX
DE   Infectious salmon anemia virus (ISAV) NP gene for nucleoprotein, genomic
DE   RNA, isolate 390/98
XX
KW   NP gene; nucleoprotein.
XX
OS   Salmon isavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Isavirus.
XX
RN   [1]
RP   1-2069
RA   Snow M.;
RT   ;
RL   Submitted (22-MAR-2000) to the INSDC.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1016/S0168-1702(00)00248-3.
RX   PUBMED; 11226579.
RA   Snow M., Cunningham C.;
RT   "Characterisation of the putative nucleoprotein gene of infectious salmon
RT   anaemia virus (ISAV)";
RL   Virus Res. 74(1-2):111-118(2001).
XX
RN   [3]
RP   1-2069
RA   Snow M.;
RT   ;
RL   Submitted (13-MAR-2001) to the INSDC.
RL   Snow M., Aquaculture and Animal Health, FRS Marine Laboratory, PO Box 101
RL   Victoria Road, AB11 9DB, UNITED KINGDOM.
XX
DR   MD5; 2453c502917bf663a4ef3d6935a09fff.
DR   EuropePMC; PMC3003268; 21092282.
DR   EuropePMC; PMC61118; 11717436.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2069
FT                   /organism="Salmon isavirus"
FT                   /host="Salmo salar (Salmon)"
FT                   /isolate="390/98"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom:W Scotland"
FT                   /db_xref="taxon:55987"
FT   CDS             63..1913
FT                   /transl_table=1
FT                   /gene="NP"
FT                   /product="nucleoprotein (NP)"
FT                   /function="Binds genomic RNA in nucleocapsid"
FT                   /db_xref="GOA:Q98VU1"
FT                   /db_xref="UniProtKB/TrEMBL:Q98VU1"
FT                   /protein_id="CAC34559.1"
FT                   /translation="MADKGMTYSFDVRDNTLVVRRSTATKSGIKISYREDRGTSLLQKA
FT                   FAGTDDEFWLELDQDVYVDKRIRKFLEEEKMKDMSPRVSGSVAAAIERSVEFDNFSKEA
FT                   AANIEMSGEDEEEAGGSGMVDNKRRNKGVSNMAYNLSLFIGMVFPAITTFFSAILSEGE
FT                   MSIWQNGQAIMRILALADEDGKRQTRTGGQRVDMADVTKLNVVTANGKVKQVEVNLNDL
FT                   KAAFRQSRPKRSDYRKGQGSKATESSISNQCMALIMKSVLSADQLFAPGVKMMRTNGFN
FT                   ASYTTLAEGANIPSKYLRHMRNCGGVALDLMGMKRIKNSPEGAKSKIFSIIQKKVRGRC
FT                   RTEEQRLLTSALKISDGENKFQRIMDTLCTSFLIDPPRTTKCFIPPISSLLMYIQDGNS
FT                   VLAMDFMKNGEDACRICREAKLKVGVNGTFTMSVARTCVAVSMVATAFCSADIIENAVP
FT                   GSERYRSNIKANTTKPKKDSTYTIQGLRLSNVKYEARPETSQSNTDRSWQVNVTDSFGG
FT                   LAVFNQGAIREMLGDGTSETTSVNVRALVKRILKSASERSARAVKTFMVGEQGKSAIVI
FT                   SGVGLFSIDFEGVEEAERITDMTPDIEFDEDDEEEEDTDI"
XX
SQ   Sequence 2069 BP; 691 A; 378 C; 544 G; 456 T; 0 other;
     acaacgctgg attaggcaaa gattgctcaa atcccaaaaa taatacagaa aacgtataag        60
     agatggccga taaaggtatg acttattctt ttgatgtcag agacaacacc ttggttgtaa       120
     gaagatctac cgctactaaa agtggtataa agatctccta cagagaagat agaggtactt       180
     cacttctcca aaaggccttt gcggggacag atgatgaatt ctggctggag ctggatcaag       240
     acgtgtacgt agacaagagg attagaaagt tccttgagga agagaagatg aaggacatga       300
     gtcccagagt gtctggttct gtcgctgcag caatcgaaag gtcagtggag ttcgacaact       360
     tttcaaagga agcagctgcg aacatcgaga tgtcaggaga ggacgaggaa gaagcaggtg       420
     ggagtggcat ggttgacaac aagaggagga acaaaggggt ctccaacatg gcgtacaacc       480
     tttcactgtt cattggaatg gtcttccctg caatcaccac gttcttcagc gcaatcctgt       540
     cagaaggtga aatgagcatc tggcaaaacg ggcaggcaat catgaggatt ctcgctttgg       600
     ctgatgaaga cggaaagagg caaacgagaa caggcggaca gagagtggac atggcagatg       660
     ttaccaagct aaacgtggtg acagcaaacg ggaaagtcaa gcaggttgaa gtcaatttga       720
     atgacctgaa ggcagctttc agacagagca gacccaaaag gtcagactac aggaaagggc       780
     aaggatcaaa ggcaactgaa tcaagtattt ccaaccagtg catggctctg attatgaagt       840
     cagtgttgtc agcagaccag ctgtttgcac caggtgtgaa gatgatgagg accaatggtt       900
     tcaacgcatc atacactaca ctagcagaag gagccaacat tccaagcaag tacctaaggc       960
     acatgaggaa ctgcggagga gttgctctag atcttatggg gatgaagaga atcaagaatt      1020
     caccggaagg agctaagtct aagatctttt ctatcatcca gaagaaagtc aggggaaggt      1080
     gtcgcactga ggagcaacgg ctgctgacta gtgcattgaa gatcagtgat ggcgagaaca      1140
     agttccaaag gatcatggac actctgtgca caagctttct gattgaccca cctagaacaa      1200
     ccaaatgctt cattccacct atctctagtc tcttgatgta cattcaggac ggaaattcag      1260
     tgttggcaat ggacttcatg aagaacggag aagatgcttg caggatctgc agagaggcaa      1320
     agctgaaggt tggagtgaac ggcacattta caatgtctgt ggctagaaca tgtgtagctg      1380
     tgtcaatggt tgcaacagca ttctgttcag cagatatcat cgagaatgca gttcctggct      1440
     cggaaaggta caggtcaaac atcaaggcaa acacaaccaa acctaagaag gactcaacat      1500
     acacaatcca agggctgagg ctgtccaatg tgaagtacga ggcaagacct gaaacatctc      1560
     aaagcaacac agatcgaagc tggcaagtga atgtcacaga cagtttcgga gggctagcgg      1620
     ttttcaacca aggcgctatc agggagatgc ttggagatgg aacatctgag acaacaagtg      1680
     tgaatgtcag ggctctggta aagaggatct tgaaatctgc ttcagaaaga agcgcaagag      1740
     ctgtaaaaac attcatggtt ggagaacaag ggaagtctgc aattgttatc tcaggagtgg      1800
     ggcttttctc tattgacttt gaaggggttg aggaggcaga gaggattact gacatgacac      1860
     ctgacatcga gttcgatgag gacgatgagg aggaggaaga cactgacatt tgaaactgca      1920
     ctatgtgaat taactagtta ctctatgtta tgatgcactt taatgaaact atgatataat      1980
     tgggtttggg tattattatt aaaattaaat tgatacggta ttgacgatat ttacaaataa      2040
     agaaaaaaaa aaaaaaaaaa aaaaaaaaa                                        2069
//