Dbfetch
ID AJ271838; SV 1; linear; genomic RNA; STD; VRL; 7147 BP. XX AC AJ271838; XX DT 25-MAY-2001 (Rel. 67, Created) DT 28-JAN-2003 (Rel. 74, Last updated, Version 3) XX DE Chinese wheat mosaic virus ORF1, ORF2 and ORF3, genomic segment RNA1, DE complete sequence XX KW movement protein; ORF1; ORF2; ORF3; replicase. XX OS Chinese wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-7147 RA Adams M.J.; RT ; RL Submitted (28-FEB-2000) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RA Yang J., Chen J., Chen J., Jiang H., Zhao Q., Adams M.J.; RT "Sequence of a second isolate of Chinese wheat mosaic furovirus"; RL J. Phytopathol. 149:135-140(2001). XX DR MD5; 2e147a7cd2698e2b05c348ed6d229464. DR RFAM; RF01106; SBWMV1_UPD-PKb. XX FH Key Location/Qualifiers FH FT source 1..7147 FT /organism="Chinese wheat mosaic virus" FT /segment="RNA1" FT /host="wheat" FT /isolate="Rongcheng" FT /mol_type="genomic RNA" FT /country="China:Shandong" FT /db_xref="taxon:83544" FT 5'UTR 1..101 FT CDS 102..4154 FT /product="replication protein" FT /function="RNA replication" FT /note="ORF1" FT /db_xref="GOA:Q91QZ0" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91QZ0" FT /protein_id="CAC39426.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVRWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEYTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSRKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT VTDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSEP FT SNNEEQTNGDYRDSRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDALSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVHVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVNVVKKMDQKKLELVEKVKASAVAVVELSKTKPVTGNSCAVDLWADFEKDLDDDD FT ESGCGASVVTKGKEICQDNVGPVLLYGSSSCSSVSEVEEETDVVSVTDSGNSPATSCGG FT TVLDKSVSTASNDALVELPVTATTVATVETGNADAVIASSDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGLISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNSGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERTK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLKTTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDK" FT CDS 102..5678 FT /transl_except=(pos:4152..4154,aa:OTHER) FT /product="replicase readthrough" FT /function="RNA replication" FT /note="ORF2" FT /note="readthrough protein" FT /db_xref="GOA:Q91QY9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91QY9" FT /protein_id="CAC39427.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVRWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEYTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSRKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT VTDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSEP FT SNNEEQTNGDYRDSRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDALSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVHVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVNVVKKMDQKKLELVEKVKASAVAVVELSKTKPVTGNSCAVDLWADFEKDLDDDD FT ESGCGASVVTKGKEICQDNVGPVLLYGSSSCSSVSEVEEETDVVSVTDSGNSPATSCGG FT TVLDKSVSTASNDALVELPVTATTVATVETGNADAVIASSDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGLISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNSGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERTK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLKTTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDKXRFGSKYESILICDREVRVPDVGTPAILQDFYDKVLPGNSTMDSHFDGYEVS FT TSDISIELENCTVQPNKNVRVWQDKRGLVPVMRTAMPPTRQNLPVEAMLALKKRNMAAP FT KLQEAVNEFEVIERTINRAKEIFFNVELIDDSELSTRESNLRWWRRQSTTARAQMKKEM FT RVLHEIDLCFYSYCIKGGEKPKMDRSPQHEYGALQTVVFPDKIVNALFGPVMKEINERI FT RMALKPHVVYNSRMNADELNRTVEFLDPDEEYNAFEIDFSKFDKSKTSLHIRAVIELYK FT LFGLNDLIALLWEKSQCQTKVKDFVNGITAYLLYQQKSGNCDTYGSNTWSAALALLESM FT PLEKAKFLIFGGDHSLILFPKQQVVEDPCRRLASLWNFDCKLFDFKHNMFCGKFLLKIG FT DRFKFAPDPMKLITKLGRKDIADGRLLSEIFVSIGDNFRSYRDYRILEQLCLAVRERYK FT TDEDPTATLITLKKYIFDFKLWASLFNYSGEFVESRVDRNFEW" FT misc_feature 5679..5739 FT /note="non-translated region" FT CDS 5740..6729 FT /product="movement protein" FT /function="cell-to-cell movement" FT /note="ORF3" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q91QY8" FT /protein_id="CAC39428.1" FT /translation="MTSKDVKGESYESVYNKMLDMQTEAGGANELRLNRQRSFNVENRY FT VEKALIQPGIITKMADAWTSFTKTNKEEGTPYNLSFSCVLINVIPTVPKGYAGTVEVSL FT LDSGLSPLENIIPDQTQMMELGAGPHVMCFFMHYSIPLNDKDRSIKLAFKIDAEMANKG FT MSVMNVYTYWTQRQGDHSSYSEPQRSTCSKLLLGYDKSLKMKTRGGVRRFVGRSLTLHN FT LEQSVPQMLPANINVLKENVPLYRKESIMDLTKDEREKNAKLEELRKTRAIQTGRNVEE FT MKKRQMELLKEARRKTAEDSVAAADKRKYQIGSSSEQPDITFGSFNKV" FT 3'UTR 6730..7147 XX SQ Sequence 7147 BP; 2107 A; 1230 C; 1838 G; 1972 T; 0 other; gtatttcttt ctctctacgt cgttagacag tgtagagtgt ttggaatact tgttgcatta 60 caaaggcacg cttcggcgat aaatcctttg tttgtaacaa aatgccgatc gatagcagtt 120 cgatacttgg tattattagc gaagaggatg tcattagggc cgccatcagt actagtgcta 180 caaaatttgg ttcgcagttg catagtactg tgtgcgatca tgttaaagag acgtacttgg 240 acgctatgga aagacaaaaa acaaaaaaga aaatagatgt gaggcgtgac ttgtcacagg 300 aacagctcca acttttaaat gacctatatc cggagagaca cattgtgtca agcaactgtg 360 aaagaggtac gcacagcttt gcagcggctt cgaggaagat cgagactgat ctgttgttga 420 gtcgtatccc taaaaaatcg tgggtctacg atattggggg caactgggcc acgcacatca 480 agcgcaacga tgggcgtagg gtacattgtt gttgccctac tattgacata agagattctg 540 cgaggaagac tgttaggtgg gcgtctatag aaaaatattt ggatgagaag gacgagatac 600 ccaccgaagt cggtgaacgt attaagcgtg tgcaagctga tgaaattaag atttatgaga 660 atttgaagaa taaaagggct cagcctgagg atctagatgg taagtggtac tgtggaaaca 720 agtttgagga atgtgtgttc agagcagaga gggcttatgc gatggccatc catagcattt 780 atgatattga tcttatggat ctagccaatg ctttagaaga aaaaagaata aagatcatga 840 gtggtacgtt cctgttttcg gttgacctgt tacttggaaa gaagagcgga tcactaccaa 900 ccatggatgg tttctttgag gtggaaggtg actacgtaaa atatggtttc aaaaatgata 960 caaacccagg ttataagcat aagctcagtc agctgatgaa gtatctgacg aagacttttg 1020 tcgtcgcgaa aggagggact atttactacc tagagcttac tgaacagcga ggtgatgtga 1080 tgttcttcac aatgacggac gcaacggaag cgaggatgaa cggtgttgtg gctgacgagt 1140 ctttcaagtg cataccaatt gataataagt ctgaggttgt atttcccata ttcgaggtgg 1200 ataagcagac tgattcgctg attttttccg aggtattatt gtcgaaggat ttcgttcaaa 1260 gggctatcga atacacagga aggcttaaac cgaatcaact cactccggat aatgtgaata 1320 cctatttgac ttccaccaac aatactatca ttattggtgg ttcatcaaga aagaatacta 1380 cgaaagtcga tgctacgttg attcagcaaa ttactaccac tctggtggtt tggacggagc 1440 ttatgaattt gcgccaaaag agggtgttag agaagttaag gttgcagatg aaagacgatg 1500 tggacttcaa gtcgttggcg catactgcgt ttttgaaggt attcggtaaa gtgagctatt 1560 atcagagagc gttacgttgt ttcgctaatt ggctttcgta cgtgcatggc actgacgcca 1620 ttcaatttca cgatgtccct ctgtatgcag aggtcacaga cagagtgaag ttgtggaaga 1680 cgcacgcacc aaatcagggc tttgtgctcg acatggaaga cttggatgta aaaatcaaaa 1740 tgcatgaggt gtctgaaaga gaaaagagag atgttagtcg gtgcatagtg tctgggaagt 1800 tgggggagtt acagatccat tctgaacctt ctaataatga agaacaaacc aacggtgatt 1860 atcgtgacag tcggagacgt acaacttttg aagacctgct ggagggtgaa gtggctacga 1920 attttcttga tgattggtgt gagaagaatg atcatttcaa tttttcgcgt gatgacgcct 1980 tgtctaagta tgcttggggt ttgaaattac tgaaaggtat ttgggagttt ttactcccgc 2040 ctatggattt cgcgcccgtt tatgtcgatg atgagcaagc aagactaagg atggtccatg 2100 tgaatgaaag gagaaatact tctgatactg gtgctgacgg agacgtcgca gcttgtgaag 2160 ttgcagcaga tttttcgaaa gcgatggaca cgttggttaa cgtggtaaag aagatggatc 2220 agaagaagct ggaactagtt gagaaggtga aagcatctgc ggttgctgtt gtcgaactga 2280 gtaagactaa acctgttact ggtaacagct gcgcggtgga tctctgggct gattttgaga 2340 aggatttgga cgacgatgat gaatctggtt gtggtgcttc cgtggtgact aaaggtaaag 2400 aaatttgcca agataatgtc ggaccagtgc ttttgtatgg gagttcttca tgctcctctg 2460 ttagtgaagt ggaggaagaa actgatgtgg ttagtgtgac tgattctggg aatagtcctg 2520 ccacaagttg cggaggaacg gttcttgata aatcggtgag tactgcgagt aacgatgctt 2580 tggtcgaact acctgtcact gctacaactg tcgcgacagt tgagacgggg aatgcggacg 2640 ctgtgatcgc tagtagcgac gagtcagcct ttagtgacgt taacgacaag tcgtggggct 2700 cggtcgctga ggaagaaagt gatgacactt tttattcatg ctctggtctg atttcagaca 2760 aagtgaagaa aagtaatttg ccaaagaggc cagatttttc gaaatttcct actgtgcaac 2820 agaaggcgaa acacgaggcg atgtggtatc tgcaatgcaa gatcgtttct gataggacca 2880 ctctgaggag tattattgat gaccatctac gggggatgtt tcacaatgga acttgtgaac 2940 tgcctaaaga ttcagctttt ttggactata ctgccgataa cagcgggacc tggatgtacg 3000 ggaaaccgtc acgttttggt cacagttatg gagttggttt ttcactggac acgaggcaga 3060 gagtaagtaa gtgtgaactt gtgaagttga tgtggaatca tgacagccgt ggtcaggtaa 3120 atcagaaacc agtgaatacg agagctttcc agtatttact gcttagtgaa ctctccttta 3180 tgatgaatga gatgataata taccgtaacc ttcagcaagt gatgcgcaag agggagagga 3240 ctaaacaggc acgtattaca ttgagagatg gagttcctgg ttgcggaaaa tctacgtgga 3300 ttctgaacaa tgcaaatccc acaaaagata tgattctatc ggtgggaaaa gaggcaactg 3360 aggatttaaa agagaaattt atgaaaaaac acaggtgtgt ggaatccgac ttgaagagga 3420 taagaactgt ggattcattt cttatgcatg attatgacaa gtacagggca gcaaccgtac 3480 actttgacga ggcacttatg gcgcacgctg gtatggtgta cttttgtgct gatatacttg 3540 gtgctaagaa ggtcatttgt cagggtgatt ctcaacaaat accttttatt aatcgcgttg 3600 aatctatcac attgcagtac tcaaagcttg taattgacga gactgagcat gtgcgactaa 3660 cgtatagatc tcctgttgac gtggctcatt atcttaccaa aaaatcgtgg tacagtggag 3720 gaagagttac cacaaagaac cctgtgatga gatctatgaa aactgtggga ccgagagacg 3780 ttaaacctat gacgtcagtt cactgtgttc cttattttaa agacgcgcag tacttgacgt 3840 ttacgcaatc tgagaaaact gatttgtaca aggcgctgag gaataaaggt ccggtcacag 3900 tgaataccgt gcatgagact caaggaaaaa cttttgatga cgtcattgtg gtgaggttaa 3960 aaactacaga aaatgagatt tatccaggtg gtaggaaagg tcaaccttac gaaattgtgg 4020 caacaaccag acatcgccga tcgttggttt attatactgc gattgaagac aggcttttcg 4080 aagatattag cgacatgcag gatgtcatgg aaagcaaact catgaagagt ttgtgtcccg 4140 aattcgacaa atgacggttt gggtcgaaat atgagtccat cttaatatgc gatagagagg 4200 taagggtacc tgatgtagga acacctgcaa ttttgcagga cttctacgac aaggtgttac 4260 ctggaaattc aacgatggat tcacatttcg acgggtatga agtttctact tctgacataa 4320 gcatcgaatt ggagaactgc acagtacaac ccaacaaaaa tgttagggtg tggcaagaca 4380 agcggggttt ggtaccggtg atgcggactg ctatgccgcc tacacgacag aatcttccgg 4440 ttgaggccat gttagcgttg aaaaaacgaa atatggcagc accgaaattg caagaagccg 4500 tcaatgaatt tgaggtgata gagaggacta taaatcgggc caaagagatc ttctttaatg 4560 tagaactgat tgacgacagt gaactttcta ctagagaatc caacttgcgt tggtggagaa 4620 gacaatctac aaccgcgagg gcgcagatga aaaaggaaat gcgggtattg catgagatag 4680 acctgtgttt ttacagttat tgcatcaaag gtggtgagaa acctaagatg gacagatcac 4740 cccagcacga atacggagcg ttacagacgg tggtgtttcc cgataaaatt gtaaacgctc 4800 ttttcggtcc ggtcatgaag gaaatcaatg agcgtatcag aatggctttg aaaccgcatg 4860 ttgtgtacaa ttcgagaatg aatgctgatg aactcaaccg tacagttgag ttcttagatc 4920 cagacgaaga atacaatgcg tttgaaatcg atttttcaaa attcgacaaa tcaaaaacgt 4980 cattgcacat tcgagcggtt attgagctat acaagctttt cggtctgaat gatttgatcg 5040 cccttctgtg ggagaaatcg caatgtcaga ctaaggtaaa ggactttgta aatggcatta 5100 ccgcgtattt gctttatcag cagaaatcgg gtaattgcga cacatatggt tcaaacacat 5160 ggtccgcggc gttggcgttg ttggaatcaa tgccattgga aaaagcaaag tttttgatct 5220 tcggaggtga ccactcattg atcctttttc caaaacaaca ggttgtggaa gatccctgca 5280 ggaggcttgc ctcactgtgg aactttgact gcaaactgtt tgattttaag cataacatgt 5340 tctgtgggaa attcttactt aagattgggg acaggttcaa atttgcacct gatcctatga 5400 agttgattac gaaactgggt cgtaaggata ttgctgatgg gagattgttg tctgagattt 5460 ttgtgtctat cggggataat ttccggtctt accgggatta caggatactc gaacaacttt 5520 gtttggccgt acgggaaagg tacaagactg atgaagatcc gacggctacg ttgattactt 5580 tgaagaagta catcttcgat tttaagcttt gggctagttt gtttaattat agtggtgagt 5640 ttgtggagag tagggtagat aggaactttg aatggtgatt cgctgtttct cgttgttttt 5700 atctattgtt tgcttctctt tttctcttta ctgctaatca tgacttccaa agatgtcaaa 5760 ggtgaatcat acgagtcggt gtacaacaag atgttggata tgcaaactga agcgggcggt 5820 gcaaatgagt tgcgtctgaa caggcagagg agtttcaatg ttgagaatcg gtatgtcgag 5880 aaagcactca ttcaaccggg gattattaca aagatggctg atgcatggac gagttttaca 5940 aaaaccaaca aggaggaagg gacaccatat aacttgtctt ttagttgcgt gttaataaac 6000 gttataccaa cagtacctaa aggttacgca ggtactgtgg aagtatcact gctcgattcg 6060 ggcctgtcac ctcttgagaa tatcattccg gatcagacgc aaatgatgga gttgggcgcg 6120 ggaccacatg tgatgtgttt ctttatgcat tacagcatac ctttaaatga caaggatcgt 6180 tcaatcaagt tggctttcaa aattgatgca gagatggcta acaaaggtat gagtgtaatg 6240 aacgtctaca cttattggac gcaaagacag ggggatcatt cttcttattc tgaacctcag 6300 aggtcaactt gttcgaagtt gcttttgggt tatgataaga gtttgaagat gaagacgaga 6360 gggggtgtcc gacgtttcgt tggtcgttca cttactttgc acaatttaga gcaatctgtg 6420 ccacagatgc ttcctgctaa tattaatgtg cttaaagaga atgtcccttt gtatcggaaa 6480 gagagtataa tggatcttac taaagatgaa agggagaaaa atgctaagtt ggaggaactt 6540 agaaaaactc gtgccattca aacaggacgc aatgtcgaag agatgaaaaa gaggcagatg 6600 gagctgttga aagaggctcg tcgtaagacg gctgaagatt cggtcgctgc tgctgacaag 6660 cgtaagtacc aaatcggttc atccagtgag caaccggaca tcacttttgg ttcttttaat 6720 aaagtgtgat aagtgtgtat actatacata tatacattat tgtatatggc ttgtaagttt 6780 actactatat ttgtactttg tattattaca ttgtaaaaat agtctaactt gtcagactga 6840 gacaagtcgt tttcagtacg ataactggaa ccgcttgata agcgggttaa aaaacattca 6900 aacctatttg agcaggttgc gctcaaacgt ggtcattacg ataaatgact ctgttaacca 6960 aacagaagta aattggttac gtagtacagt gcgttaaact gtacgactat cttctagtcc 7020 ctattgatgt aattgaaaaa agatcaatat tgggcaatga cgaagagcga ctgggcgtcg 7080 cggctgctaa gacacagcag ttaagagggg ttcaattccc ccccgaaccg gagggttatc 7140 cggccca 7147 //