ID   AJ271086; SV 1; linear; genomic RNA; STD; VRL; 1787 BP.
XX
AC   AJ271086;
XX
DT   12-JAN-2001 (Rel. 66, Created)
DT   11-MAY-2001 (Rel. 67, Last updated, Version 5)
XX
DE   Brome streak mosaic virus partial genomic RNA for polyprotein gene
XX
KW   coat protein; NIb protein; polyprotein.
XX
OS   Brome streak mosaic virus
OC   Viruses; Riboviria; Potyviridae; Tritimovirus.
XX
RN   [1]
RP   1-1787
RA   Adams M.J.;
RT   ;
RL   Submitted (12-JAN-2000) to the INSDC.
RL   Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts
RL   AL5 2JQ, UNITED KINGDOM.
XX
RN   [3]
RX   DOI; 10.1007/s007050170144.
RX   PUBMED; 11402861.
RA   Chen J., Chen J., Adams M.J.;
RT   "A universal PCR primer to detect members of the Potyviridae and its use to
RT   examine the taxonomic status of several members of the family";
RL   Arch. Virol. 146(4):757-766(2001).
XX
DR   MD5; f3d2338eb1f404af6737117c034f59af.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1787
FT                   /organism="Brome streak mosaic virus"
FT                   /mol_type="genomic RNA"
FT                   /note="Reported in [3] as Oat necrotic mottle virus isolate
FT                   ATTC PV-107 from Canada. Subsequent sequence comparisons
FT                   suggest that the isolate had become contaminated or wrongly
FT                   labelled"
FT                   /db_xref="taxon:42631"
FT   CDS             <1..1542
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9DIC4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q9DIC4"
FT                   /protein_id="CAC21718.1"
FT                   /translation="GNNSGQPSTVVDNTLCLMIAMEYARQRAISDGHLNMQMRYVCNGD
FT                   DLLINANEEAKEVVQGKYEQYIKELELNYCFDDAFQSIEGVEFMSHKFMLRNGIYIPKL
FT                   ARHRIVAILEWQRSAEPQAIKSAILAACVEAFGYDDLTELIREYAISLEPVWGSFLPTD
FT                   GEIEQLYFEGIAKQEVARCLAGVDDVCKFESAASGTNEAVDEVLKAAGDDEALARANAA
FT                   STSGITPPAQNVGAGTTTPAKANPPSGRRPSSGSLIDNPIGGNGVQDVADRTSGIVFPA
FT                   PTRKSTSLYLPPKVKLRATPERIEKVRKYLPDPQQIDLRYSTQQELNDWIKASADGLGQ
FT                   TEEAFIDNILPGWIVHCIVNTTSSENRKAGSWRCVTNAGTADEEQVLYDIEPMYSAANP
FT                   TMRAIMRHFSDLARLVIAESFKQGRPLIPKGYIKAGVLDASSAAAACDFVVRDRHDTAT
FT                   FVQVQNQVLVNRVSGITNRLFAQAMPSAGANEDMARHDAQDAAEGIHNLGGARAF"
FT   mat_peptide     <1..741
FT                   /product="NIb protein"
FT   mat_peptide     742..1539
FT                   /product="coat protein"
FT   3'UTR           1543..1787
XX
SQ   Sequence 1787 BP; 515 A; 381 C; 490 G; 401 T; 0 other;
     gggaacaaca gtggacaacc aagcacagtt gtggacaata cgctgtgcct aatgatagca        60
     atggagtatg cacgccaaag agccattagt gatgggcacc ttaacatgca gatgcgatac       120
     gtgtgtaatg gtgacgactt gctaatcaat gcgaatgaag aagcaaagga agtagttcaa       180
     ggcaagtacg aacaatacat aaaggaactt gaactgaatt attgcttcga tgacgcattc       240
     cagagcattg aaggcgttga gtttatgtca cataaattca tgctgcggaa tggcatctac       300
     atacccaagc tagctcggca ccggatagtg gcgattctgg aatggcaacg gagtgcggaa       360
     cctcaggcta ttaagagcgc tatcctagca gcgtgcgtag aagcattcgg ttatgatgat       420
     ttaactgaat tgattcgtga gtacgcaata tctttggagc ccgtttgggg ttctttctta       480
     ccaaccgatg gcgagattga acaactttac ttcgaaggaa tcgcaaaaca ggaggtagct       540
     cgctgcttag ctggagttga tgatgtgtgc aagttcgaga gtgcagcatc aggaactaat       600
     gaagccgtcg acgaagtgct gaaagctgct ggtgatgatg aagcgttggc acgagcaaac       660
     gcagcatcca ctagtggtat cacaccacca gcgcagaacg tgggggcggg cacaacaaca       720
     ccagccaagg ccaatccacc atcaggaaga cgtccctcgt ctggaagctt aatagataat       780
     cctattggag gaaacggtgt ccaagatgtc gcggatcgaa caagtgggat tgtgtttcca       840
     gcaccaacca gaaagagcac aagtctttac ctaccgccta aggtaaagct gagggcaaca       900
     ccagaaagaa tagagaaagt gcgaaagtac ttacccgatc ctcagcaaat agacttgagg       960
     tactcaacac agcaagagct caatgattgg atcaaagcat cagccgatgg gttgggccaa      1020
     actgaagaag ccttcattga caatattctg cctggttgga ttgtacactg tattgttaat      1080
     acaaccagtt cggaaaatcg gaaagctggc tcttggcgat gtgtaacaaa tgctggtacg      1140
     gctgatgagg agcaagtgct ctacgatatt gaaccgatgt attcagcagc gaatccgaca      1200
     atgcgtgcca tcatgcggca tttcagtgac ctggcgcgtc tggtgatagc agagagcttt      1260
     aagcaagggc gcccactcat accaaaggga tatattaagg cgggagttct agatgcgagt      1320
     agcgcggcag cagcatgtga ctttgtcgta cgcgatagac acgacacagc cacgtttgtg      1380
     caagtgcaga atcaagtctt agttaatcgc gttagcggta taactaatag gctgtttgca      1440
     caggcgatgc ctagcgctgg tgctaacgag gacatggctc gccatgacgc tcaggatgcc      1500
     gcagagggta tccacaacct aggtggagca cgagctttct agaagtctcg acgagttgtc      1560
     gagcacgccg gcgtctgggg gttcaaaagt aaaaactcgt tatagagttt tcctcgcggg      1620
     acaatggcgt tggatcagga atgtaatgtg aaagagcaaa cttgatcaaa cgagcgtaac      1680
     aaaagcgcag caaaatggaa agtcgggcgt tatttcaggg cgcgtgtttc gccacttttg      1740
     tggaggcgca cgtttcatgg cgtttctttc ggctactgtt gagcaat                    1787
//