Dbfetch
ID AJ252152; SV 1; linear; genomic RNA; STD; VRL; 3688 BP. XX AC AJ252152; XX DT 06-JAN-2001 (Rel. 66, Created) DT 12-JAN-2001 (Rel. 66, Last updated, Version 2) XX DE European wheat mosaic virus RNA2 complete sequence, genomic RNA XX KW coat protein; coat protein readthrough; cp gene; cp-RT gene; ORF3. XX OS Soil-borne cereal mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-3688 RA Adams M.J.; RT ; RL Submitted (06-JAN-2000) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [3] RA Yang J., Chen J., Chen J., Adams M.J.; RT "Sequence analysis of a soil-borne wheat mosaic virus isolate from Italy RT shows that it is the same virus as European wheat mosaic virus and RT Soil-borne rye mosaic virus"; RL Sci. China, C, Life Sci. 30:627-634(2000). XX DR MD5; e69fd511c7ba7b8f26444d9b25f5d457. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01082; SBWMV1_UPD-PKh. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. DR RFAM; RF01112; UPD-PKg. XX FH Key Location/Qualifiers FH FT source 1..3688 FT /organism="Soil-borne cereal mosaic virus" FT /chromosome="RNA2" FT /host="wheat" FT /mol_type="genomic RNA" FT /country="Italy:Ozzano" FT /db_xref="taxon:100887" FT 5'UTR 1..332 FT CDS 333..2597 FT /transl_except=(pos:861..863,aa:OTHER) FT /gene="cp-RT" FT /product="coat protein readthrough" FT /function="particle assembly, fungus transmission" FT /db_xref="GOA:Q9DJG3" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:Q9DJG3" FT /protein_id="CAC20158.1" FT /translation="MAVKNGHTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILT FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDS FT FEAKFNLKWEGTSXRDGVSGKLRARIVEDFQNRLVLADDLGVFPRRNLSGEVIRDEPEI FT IYAELEDKLLSFESSVYHPKAVTMETEVSVLPKLQTDLETGNAEEDIETTVVTEVLIDE FT ESSYFWLYLVFLLLSILISCFIALSRWFICFLGNRGGRGGPFFRRIATALWSARLWLLS FT KAARRYGNLGIVRKRYTRAGMRRYLRDYNFQFDEWESVVDCAPSEALIVADQRMFVRAV FT NKIVDLKGDFDAIEIVKKTFLNYGVRNYKVERWLNRHTIRSALGVLSDVTRREVLTLTD FT GMLSLENATLDEVLGCDVESQRNSMYFKDIVALQFAFRLIGAPEFSDFVMAYKGTLYRC FT YVEATKRHTSMLEQFHVNEDQKRRNDKALEWLLMLGQGAFVFSAAVTAGVTIFKIHKWI FT KSRMLLRALQMLPSVGGGGNEGGGRFSEEALNRFAASQTPEERIEALHTDFDTAADDME FT SFSPEDMQAEIRHVIQAHVDGTYHAADLPFLGDMSDAVVPAMADSVVDLSNVSSDVGSV FT DTSVSSVTSKVRRRAVASNTRIYPSVGNVRYSDIKSPRVSGKSGISSMKMKITSRPMLA FT S" FT CDS 333..863 FT /gene="cp" FT /product="coat protein" FT /function="encapsidation" FT /note="may be initiated at position 213" FT /db_xref="GOA:Q9DJG2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9DJG2" FT /protein_id="CAC20159.1" FT /translation="MAVKNGHTGYNKELNLMASIHPFIRLGTLISQIEGWQATRASILT FT HLGVMLNGVSKLGERNFFSRQKRFGTHTQDGDEIFCDLGGEAVMQIITRLTVSLQSAKG FT EGSQTRNAKRGTTPTTNQVEGEEQGQTDQTLAISNALAEFMTFIHTKDFTTNECYTQDS FT FEAKFNLKWEGTS" FT misc_feature 2598..2666 FT /note="non-translated region" FT CDS 2667..3164 FT /product="cysteine-rich protein" FT /note="ORF3" FT /db_xref="GOA:Q9DJG1" FT /db_xref="InterPro:IPR007609" FT /db_xref="InterPro:IPR016567" FT /db_xref="UniProtKB/TrEMBL:Q9DJG1" FT /protein_id="CAC20160.1" FT /translation="MSACAFHSCDKCVDGPKNVVCVSKYRHSVYKVLGLSVVKCRLPAD FT CGVNCGMPAAFVLEDGHPRLTLDGYCGEKHKGYVISGAWRHAQLRTLNDELDKLEKRGE FT FLKTQIRVLSETANANTAPVYAPTKINRMKAEVQDVNVKIQDRSTALAGVMDAVALNLS FT PK" FT 3'UTR 3165..3688 XX SQ Sequence 3688 BP; 985 A; 642 C; 971 G; 1090 T; 0 other; gtattatcat tatcacgtta cgttgagtgt taactcttct tgtgatatta cctttcttac 60 caggataaga aataaaatat tttctgggtt atcattatct tgaaacttag cagagactaa 120 catctcgctg cactaggcat gcaactttgc aataaatcct gggtagtcag ctgttagcgt 180 gtgacgttga aggatagtgg tatttcggtt cgctggataa gcttacgaga cttaaaggtg 240 aggtcgatag gtccttacaa aaggctgcgg ataaggtcac tgctgaaagt actgaatcgt 300 tgcaaccgaa agcggttgtg cagttacctc agatggctgt caagaacggt catacgggtt 360 acaacaagga attgaatttg atggcttcta ttcatccttt cattaggctg ggtactttga 420 taagtcagat tgaaggatgg caagcaacac gagctagcat acttacccat ttaggtgtaa 480 tgctcaacgg cgttagtaag ttaggtgagc gaaatttctt ctctagacag aaaagatttg 540 ggacacacac tcaggatggt gacgagatat tttgtgacct tggaggtgag gcagttatgc 600 aaatcatcac cagactcaca gtatcactac aatccgcgaa gggtgagggt tcccagacca 660 gaaatgctaa gagagggacg acaccgacta ccaaccaagt tgagggtgag gaacaaggtc 720 aaactgatca gacgttagcc atttcgaatg cgctggctga atttatgact ttcatccaca 780 ctaaagattt cacgacgaat gagtgttaca cgcaagactc ttttgaagcc aaatttaatt 840 tgaagtggga aggtacgagt tgacgggacg gcgtctcggg aaagttgagg gcacgcattg 900 tcgaagattt ccagaatagg ctggttttgg ccgacgattt gggtgttttt ccgagacgca 960 atcttagcgg tgaggtgata agggacgagc ctgaaataat atatgcagaa ctagaggaca 1020 agctcttgag ctttgagagt tctgtatatc atcctaaagc tgtgactatg gagacagaag 1080 tgtctgtatt accgaaattg caaacggatc ttgaaacagg taacgctgaa gaagacattg 1140 agacaactgt ggttactgag gtactcatcg atgaggagag cagttacttc tggttatacc 1200 tcgtatttct cttattgtct atccttatat cgtgtttcat tgcgctgtcg cgatggttta 1260 tatgttttct cggtaataga ggagggcgcg gtggcccttt ctttcggaga atagccactg 1320 cattgtggag cgcgcgactg tggctgttaa gtaaggcggc cagacgttac ggcaatcttg 1380 gaatcgtacg aaaaagatat acacgtgctg gcatgcgcag gtacttgcgt gattataatt 1440 tccaatttga tgaatgggaa agcgtggttg actgtgctcc gagtgaagct ctaatcgtcg 1500 cagatcagag aatgtttgtg agggctgtga acaagattgt ggatttaaag ggtgattttg 1560 atgctattga aattgtcaag aagactttcc tgaattacgg agtccgcaat tacaaagtgg 1620 aaagatggtt gaacaggcat acaatacgct cggcacttgg tgtactgagc gatgttacga 1680 ggagagaagt acttacatta actgatggta tgttatcatt ggagaacgct acgcttgatg 1740 aggtactggg gtgtgatgtt gagagtcaac gaaatagcat gtactttaag gacattgttg 1800 ccttgcagtt tgcttttcgt cttattggtg caccagaatt ctccgacttt gtgatggctt 1860 acaaaggtac tttgtatcgc tgttatgtgg aagcgactaa gagacatact tcgatgttgg 1920 agcagtttca tgttaatgaa gatcagaaga gaagaaacga taaggcgtta gagtggttgc 1980 ttatgctggg gcaaggagct ttcgtttttt ctgctgctgt aacagctggt gttacgatct 2040 tcaagattca taaatggata aaaagtcgta tgctcttaag ggctctgcaa atgctaccgt 2100 ctgttggtgg tggtggtaac gaaggtggtg gtagattttc tgaggaggct cttaacagat 2160 ttgcagcaag tcaaactcct gaggaacgca ttgaggctct gcatactgat ttcgacacgg 2220 ctgctgatga catggaaagt ttttcaccag aagatatgca ggctgagatt agacatgtta 2280 ttcaagctca cgttgatgga acatatcacg cagcagatct tccttttctg ggcgacatgt 2340 ctgatgctgt tgttcctgct atggcagatt ctgttgtcga tttgagtaat gttagtagtg 2400 atgtgggaag tgtggatacg tctgtttcaa gtgtgactag taaggttaga cgtcgtgccg 2460 ttgctagcaa cacgaggatt tacccgagtg ttggtaatgt taggtatagt gatattaagt 2520 caccgagggt tagtggtaaa agtgggatta gtagtatgaa aatgaaaatc actagtaggc 2580 ctatgttggc gtcctagtgt gttgttttta aaattacttg ttcacaccgc taccgctggt 2640 ctttctcggt ttttcttcct aacattatgt cggcttgtgc ttttcactct tgcgataagt 2700 gtgttgatgg acccaagaac gttgtatgtg ttagtaaata ccgtcatagt gtttataagg 2760 ttttgggcct ttctgttgtt aagtgtcgtc ttcctgcaga ttgtggtgtt aattgtggta 2820 tgcctgcagc ttttgttctc gaagatgggc atcctagact aactcttgat ggttactgtg 2880 gtgagaaaca caaaggttac gtgatttctg gtgcttggcg acatgcgcaa cttcgtactt 2940 taaatgatga acttgataag ttggagaaga ggggggagtt tttgaaaact cagataagag 3000 tgctcagtga aactgctaac gctaacactg ctcctgtata tgctcccacg aaaattaatc 3060 gtatgaaggc ggaggtacag gatgttaatg taaaaatcca ggaccgcagt actgctcttg 3120 caggtgtcat ggatgctgtc gcgttgaatt tatcaccgaa atagttcgcc acggaagtgt 3180 ggagccatat gatgagtacg ttaacgttgt atttgtataa tggatatacg tgtgtactgg 3240 agtaggtaac caggataaag aaacctagcg aaaatgtcct accaaaacat tatgcattgt 3300 ggttttgtcg tgtggtttat ttttgcttat attgctatgt tgcatgtgtg tgttaaaaat 3360 agtctaacat gtcgggcaga gacatgtcgt tgccgtcacg atagacggag ccgctgggat 3420 tgcggactat aaatcgaaca agcctatttg tacgggtcga gtacaaacgt ggccatcacg 3480 atagatggtt ctgtctttcg aacagatgta aatcggaggc gtcgtgcagt acggtaaact 3540 gcacatctat cctctagttt ctattgatgt aattgaaaaa agatcaatat tttacgatga 3600 tgaggagcga ctggtggtcg cggtagcttt gacacagcta ctaagagggg ttcaaatccc 3660 cccccgaacc ggagggtaat ccggccca 3688 //