ID AJ252151; SV 1; linear; genomic RNA; STD; VRL; 7025 BP. XX AC AJ252151; XX DT 06-JAN-2001 (Rel. 66, Created) DT 12-JAN-2001 (Rel. 66, Last updated, Version 2) XX DE European wheat mosaic virus RNA1 complete sequence, genomic RNA XX KW movement protein; MP gene; ORF1; ORF2. XX OS Soil-borne cereal mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RC Revised by author RP 1-7025 RA Adams M.J.; RT ; RL Submitted (06-JAN-2000) to the INSDC. RL Adams M.J., Plant Pathology Department, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UNITED KINGDOM. XX RN [2] RA Yang J., Chen J., Chen J., Adams M.J.; RT "Sequence analysis of a soil-borne wheat mosaic virus isolate from Italy RT shows that it is the same virus as European wheat mosaic virus and RT Soil-borne rye mosaic virus"; RL Sci. China, C, Life Sci. 30:627-634(2000). XX DR MD5; 9ab57af7faf6eaa12c4d9fb5c207f884. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. DR RFAM; RF01112; UPD-PKg. XX FH Key Location/Qualifiers FH FT source 1..7025 FT /organism="Soil-borne cereal mosaic virus" FT /chromosome="RNA1" FT /host="wheat" FT /mol_type="genomic RNA" FT /country="Italy:Ozzano" FT /db_xref="taxon:100887" FT 5'UTR 1..107 FT CDS 108..5558 FT /transl_except=(pos:4032..4034,aa:Tyr) FT /product="replication protein" FT /note="ORF2 readthrough" FT /db_xref="GOA:Q9DJG6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9DJG6" FT /protein_id="CAC20155.1" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKAWVYDIGGNWATHVKRNDGRRVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPVEIGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA FT IHSIYDIDLMDLANALEEKRIRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPMEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKAVMEL FT LRLQMKKDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSERACDVVRTDNRRKTDFGDLMEGEVATNFIDSWCEKDDHFNFSYDDAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKREKNDAEVTTDGASGFVGTERKEFD FT AAVNFLTVAGNKITDELKAQRTEVAAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLG FT EEETTTPVADTTDHASVIEKNFENLQQGSSSNSAPTVVVRENLFVRNDMGPSAVTSDDC FT STEGELREKSWASLAEEESDSSYYLNTAIISGKVQKSALPKAPDFSKYATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGTWMYGKPSRY FT GHSYGVGFSLNSKREITKCELVKLMWNYDGKGQISQKPVNTKAFSYLLLSELTFMMNEL FT LIFCNLQKVIKKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFAKRLKCTETALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELAKYRFGSKYESILICDREVRVPDVGNSVILQDFYDRV FT LPGNSTMDSHFDGYEVATTDITIEVENCKVHPHKNVKVWQDKRGLIPVLRTAMPPKRQN FT GMVEALLALKKRNMAAPKLQEAVNELEVIDRTISRARSIFLNEDMIDESLVSTRESNMR FT WWEKQSHTARQQLKSEYRVLHELDLCKYSHNIKGDEKPKNDLTPQREYGALQTVVYPDK FT IVNALFGPVMKEINERIRMALKPHVVYNSRMNAEELNRTVEFLDPEDEYDAFEIDFSKF FT DKSKTSLHIRAVIELYKLFGLDDMLSLLWEKSQCQTTVIDRTNGITAYLLYQQKSGNCD FT TYGSNTWSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRLASLWNFDCKL FT FNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKLLSEIFVSMGDNYCSYR FT DYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFNYSGEFEVCKVGRNFE FT W" FT CDS 108..4034 FT /product="replicase" FT /note="ORF1" FT /db_xref="GOA:Q9DJG5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9DJG5" FT /protein_id="CAC20156.1" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKAWVYDIGGNWATHVKRNDGRRVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPVEIGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTAERAYAMA FT IHSIYDIDLMDLANALEEKRIRIMSGTFLFSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPMEDNGNVVFPLFEVDKRSDTLCFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKKNVNKVDSLLIAQITTTLVVWTELMHARQKAVMEL FT LRLQMKKDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSERACDVVRTDNRRKTDFGDLMEGEVATNFIDSWCEKDDHFNFSYDDAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKREKNDAEVTTDGASGFVGTERKEFD FT AAVNFLTVAGNKITDELKAQRTEVAAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLG FT EEETTTPVADTTDHASVIEKNFENLQQGSSSNSAPTVVVRENLFVRNDMGPSAVTSDDC FT STEGELREKSWASLAEEESDSSYYLNTAIISGKVQKSALPKAPDFSKYATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGTWMYGKPSRY FT GHSYGVGFSLNSKREITKCELVKLMWNYDGKGQISQKPVNTKAFSYLLLSELTFMMNEL FT LIFCNLQKVIKKKERTKHALITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFAKRLKCTETALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT RVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDDVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELAK" FT misc_feature 5559..5619 FT /note="non-translated region" FT CDS 5620..6600 FT /gene="mp" FT /product="movement protein" FT /function="cell-to-cell-movement" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9DJG4" FT /protein_id="CAC20157.1" FT /translation="MGSKDVKGDSFESVYNKILDLQTEGAVGADSLKTNRQRSFNIENK FT YVEKALVQQDIATKMREGWTTWTKTNKEEGTPYNMSYSCVLLNVIPTVPRGYAGTVEIS FT LIDSGLSPLENVIPDQTQMMELGNGPHVMCFFMHYGIPLNDEGRVIKLSFKIEAEMASK FT KMSVMNVYSYWTQKQGHLSVYTEPQRSTCSKLLLGYDKSLKLKTRGDVRRFVSRSLATN FT NLEQSVPKMLPNSINILKENVPLFKKESVLDLTEQEREKQKKLETLRSVNEAQRRKSAQ FT EMQKRNDDLIKANVQKQKAKQLEIDENKKNHYDVSGVKFGSVGSD" FT 3'UTR 6601..7025 XX SQ Sequence 7025 BP; 2027 A; 1181 C; 1865 G; 1952 T; 0 other; gtatttcata tcacttaacg tcgttagaca acacaagtgt tgacgaaata cagctcttgt 60 caaacaaagg cacgcttcgg cgataaatcc tttgtttaca agacgcaatg ccgattgata 120 gcagttcaat attgggtatt atcagtgagg aagatgttgt gcgggctgca atcagcacta 180 gtgccacgaa attcggttcg caattacatg gtacagtgtg tgatcatgtg aaggagacat 240 atcttgacgc ggttgaaaga caaaaaataa aaaagaaaat tgacgttcgt agggacctat 300 cacaagagca gctgcagttg ttgaacgatt tgtatcccga acgacacatc gtttccagca 360 attgcgaacg cggtacgcat agctttgcag cggcttctcg gaagatcgaa acggacttgt 420 tgttaagtcg aataccaaag aaggcgtggg tttacgatat tggtggcaat tgggcgacgc 480 atgtgaagcg gaacgatggt aggagggttc actgttgctg tccgacgttg gatattcgtg 540 acgctggtcg gaagacgact cgatgggctt ctattgagaa ataccaagac gagaaggaaa 600 cgattcctgt tgaaatcggt gagaaactca agaggataca ggaggacgag aatagcatct 660 atgctaatct taaagctggt agatgccaac cagaagatct caatgggaag tggtattgtg 720 gtaataagtt cgaggagtgc gtgtttacgg ctgaaagagc ctatgccatg gctatacaca 780 gtatttatga cattgatctg atggacttgg ccaacgcttt agaagagaag cgtataagga 840 taatgagtgg tacgtttctg ttttcagtgg atctactgct tgggaaaaag cagggaagac 900 ttccaacgat ggacggtttc ttcgaggtgg aaggtgatta cgtgaagtat ggttttcata 960 atgacaccaa tccgggttac aagcacaaac tgagtcagtt gatgaagtat cttacgaaaa 1020 cctttgtgac tgctaaaggg ggttcgatat attatcttga actgacagag ttgcgcggtg 1080 acgtgatgtt ttttactatg acggacgcga cggaggctag gatgaatggt gtggttcagg 1140 atgagtcttt caagtgcata cctatggagg ataacggaaa tgtggtgttt cctttgtttg 1200 aagtggacaa gcgtagcgat acgctttgct tctcggagat tttgctaccc cgtgattttg 1260 tgcagagggc ggttgagtat accggccgtt tgaaagggaa tcaactcact gcggaaaacg 1320 taaacacata tctgacgtcg accaataata ccattattat tggcggttcg tcaaagaaaa 1380 atgtgaacaa ggttgattca ctgctgatag cacagataac tacgacgttg gtggtttgga 1440 ctgaactgat gcatgccagg cagaaagcgg ttatggagtt gctgaggttg cagatgaaga 1500 aagacgtgga ttttaagtct ttggcacatg ctgcatttct gaaggtgttc ggtaaggtga 1560 gtttctacca aaaggcgttg aggagtttcg cgaattggat ttcatattgt catggctctg 1620 acgctataca ttttcgccct gtgccactgt atgttgaaat aaccgacaga gtgaagttgt 1680 ggaaaactta tgcaccgaat cagggattcg ttttggacat ggaagatttg gacgagaaga 1740 taaaactgca tgagataacc gagagggaaa agtacgatgt tagtagacac attgtgtcta 1800 ctaaacttgg cgagttggct actggagatt acggtacatc cgaaagagct tgtgatgtgg 1860 tgcgcactga taaccggaga aaaactgatt ttggtgatct aatggaagga gaggtggcca 1920 caaacttcat tgactcttgg tgcgagaaag atgatcattt taacttttct tatgatgatg 1980 ctgaatcaaa gtacgtgtgg tgtgcaaagt tgctgagaat ggtgtgggat actttgatcc 2040 ctcccatgga atttgcgccc gtttatgtgg atgacaagga cgcgtcgatt cgcattgcat 2100 cgagaattga gaagagagag aaaaatgacg ctgaggttac tactgatggt gcctctggat 2160 ttgtcggcac tgagaggaaa gagtttgacg ctgctgtgaa ttttctgacg gttgctggga 2220 acaaaatcac ggatgaactg aaagctcaga gaacagaggt cgctgctgtg gctaacgcgg 2280 tagtcgcgca gaataagctg tacacggaat ctgaggtgtc taatgcagtg aagctttggg 2340 ctgatgttga tgacgaattt ctgggagaag aagagacgac tactcccgtg gcggacacta 2400 ctgatcacgc ttctgtaatt gaaaagaatt ttgagaattt gcaacagggt agctcgtcta 2460 actctgcgcc aaccgttgtg gtaagagaaa atctgtttgt gcgtaacgat atgggtccct 2520 cggcagtgac tagcgatgat tgttcgactg aaggtgaact tagggaaaaa tcttgggcat 2580 ctttggcaga ggaggagagc gattcgtctt actacttgaa tactgcgatc atttcgggca 2640 aagtacaaaa aagtgcgcta ccaaaagctc cagatttttc gaagtatgcg acgtttcaag 2700 cgaaggcgaa acaggaggct ttgtggtact tgcaatgcaa gatcgtttct gatcgtacga 2760 cattgcggag catcatagac gatcatttga gaggtatgtt tcacaatgat acttgtgagt 2820 tgcctaagga ttcagctttt ttggactaca cgactgataa cggtggtact tggatgtatg 2880 ggaaaccatc cagatatggg cacagttacg gcgtgggttt ttcattgaat tcgaagcggg 2940 agattaccaa gtgtgagtta gtgaaactaa tgtggaacta tgatggcaag gggcagataa 3000 gtcaaaaacc agtgaacacg aaagcttttt cgtatctgtt gctgagtgaa ttgacattca 3060 tgatgaacga attgctcatt ttctgcaatc tgcagaaggt tattaagaag aaggaaagga 3120 cgaaacatgc ccttattact ttacgagacg gtgtcccagg ttgcggcaaa tctacttgga 3180 ttgttgagaa cgcaaacccc atgaaagata tggtattgtc catgtgcaag gaggcgactg 3240 aagatttgaa agaaaaattt gcgaagaggt taaaatgtac ggagacggcg ttgaggaggg 3300 tccgaactgt ggattctttt ctgatgcatg attatgacaa attcagggca gcaacggttc 3360 acttcgacga agcgctgatg gcgcatgcag gaatggttta cttctgtgcg gatattttgg 3420 gtgcaaaacg agtgctgtgc caaggagact cacaacagat tccttttata aatcgtgttg 3480 aatctatcac tctgaaatac gcaaaattgc agattgatga tacggagtat gtgagattga 3540 cttatcgatc gcctattgat gttgcacact atctcacgaa gaagtcttat tatagtggag 3600 gtagggtgct tacgaagaac acaactctga gatctatgaa cactgttggc cctcgcgatg 3660 cgaagcctat gacatctgtg cattgtgttc cctaccatcg tgatactcaa tatctaacgt 3720 tcactcaatc ggagaaagct gacctttata aggcactgcg aaacaggggg ccggtaaatg 3780 tgaataccgt gcacgagaca cagggtaaga cgtttgacga tgtaatcgtg gtgaggctga 3840 agacgacgga aaatgagatt tatcccgggg gaaggaaggc tcaaccatat gagattgtgg 3900 cgactacgag gcatagacgt tcgttggtgt actatactgc gattgaggac aggctgtttt 3960 ctgatatcaa tgacatgcgg gatgtgatgg aagacaaatt gatgaagaac cttagctctg 4020 agttggcgaa atgacggttt gggtcgaagt atgaatccat attgatttgc gatagggaag 4080 tgagggttcc cgacgtggga aattctgtta ttttgcagga tttttacgat agggttctac 4140 ctggaaattc tacaatggat tcacacttcg acgggtatga agtggcaacg acagacatta 4200 ctatagaggt tgaaaattgt aaggttcacc cccataagaa tgtgaaagtt tggcaagata 4260 aacggggtct gattcccgtt ttgcgcactg caatgccacc gaaaaggcag aatggcatgg 4320 tggaagcact tttggcgttg aagaaaagga acatggctgc accgaagcta caagaagctg 4380 tgaatgaact cgaagtaata gatcggacta ttagtcgcgc tagatcaatt tttttgaatg 4440 aagacatgat tgacgaatcg ttggtctcga cgcgtgagtc aaatatgcgt tggtgggaaa 4500 aacagtcaca tacagctaga cagcaattga aaagcgaata cagggtgctg catgagttgg 4560 acttgtgcaa atattctcat aatattaaag gggatgaaaa accaaagaat gatttgacac 4620 ctcaacgtga atatggcgct ttgcagacag ttgtttatcc tgataagatt gttaatgcgc 4680 tgttcggacc tgttatgaag gagataaatg agcgtataag aatggctttg aaacctcatg 4740 tggtttacaa ttcaaggatg aatgccgaag agttgaatcg gactgtcgaa tttctggatc 4800 cggaagatga gtatgacgct ttcgaaatag atttttcaaa atttgacaaa tcgaaaacat 4860 cattgcacat acgagctgta attgagttgt ataagttgtt tggtttggat gatatgttgt 4920 ccttactttg ggagaaatct caatgtcaga ccactgttat tgacagaacg aacggcatta 4980 ctgcttattt gttgtaccag cagaaatctg gtaattgtga cacttatggt tctaacacgt 5040 ggtcggccgc tttggcattg ttggagtcta tgccattgga gaaagctaaa ttcatgattt 5100 ttggcgggga tgactctctg attttgtttc ctaaacaact ctgcattgag gatccgtgta 5160 gacgcttggc gtctctgtgg aacttcgatt gtaagttgtt taacttcagg cataatatgt 5220 tttgtggtaa gtttttgttg aagatcggaa acaagtttaa attcgctcca gatccgatga 5280 agttgttgac gaagttggga cgcaaggata ttgcagatgg taagttgctc tctgagattt 5340 ttgtttctat gggagataat tattgctctt accgggacta tcgtattttg gagcaacttg 5400 cggtggctgt gcaagaaagg tacaggacga atgaggaccc taccgcgatg ttgatcactt 5460 tgaagaagta tatttttgat tttaagctat tggctagttt gtttaattat agtggtgagt 5520 ttgaagtgtg taaagtgggg aggaactttg agtggtgact cgctgttctc gttgtttttc 5580 ttctgtgtat actattgtgt taaacgttgc gttacagcca tgggttcaaa ggatgtgaag 5640 ggtgactctt tcgaaagtgt gtataacaag attttggact tacaaactga gggagctgtt 5700 ggtgctgata gtcttaagac caatcgtcag cggagtttta atatcgagaa caaatacgtt 5760 gaaaaagctc tggttcaaca ggatattgcg acaaagatga gagaaggttg gactacttgg 5820 actaagacta ataaggagga aggaacgcct tataatatgt cttatagctg cgtactgctg 5880 aacgtcattc caaccgtacc gcggggttat gctggcacag ttgaaatttc gttaattgat 5940 tcgggcctgt caccgcttga aaatgttatt ccggatcaga cgcagatgat ggaacttgga 6000 aatggaccgc atgtgatgtg ttttttcatg cactacggta tcccgctcaa tgatgaaggc 6060 agggtgatta agctgtcatt taaaattgaa gctgaaatgg cttcaaagaa gatgagtgtt 6120 atgaatgttt actcctattg gacgcaaaaa caaggacatt tatctgttta cactgaacca 6180 cagcgatcga catgttcgaa acttttactt ggttacgaca aatcactgaa attgaaaact 6240 agaggtgacg tgcggcgttt tgtttcacgg tcactagcaa ccaataatct tgagcaaagc 6300 gttcctaaaa tgcttccaaa cagcattaac attcttaaag agaacgtacc tcttttcaaa 6360 aaggagagcg tgctggattt gacggaacag gaaagggaga agcagaaaaa gcttgaaacc 6420 ttgagaagtg ttaatgaggc acagagacgt aaaagtgcac aggagatgca gaagagaaat 6480 gatgacttga ttaaggcgaa tgtgcaaaag caaaaagcca agcaacttga aattgatgag 6540 aacaagaaaa atcactatga tgtttcgggt gtgaagtttg gttcagttgg aagtgactga 6600 gtctggtttt cttttatgta tttatatatg tattgtggtt ttgttgtgtg gtttattttt 6660 cgcttatatt gctatattgc atgtgtgcgt tgaaaatagt ctaacttgtc agtcagagac 6720 aagtcgttgc cgtcacgata gacggagccg ctgggattgc ggattataaa tcgaacaagc 6780 ctatttgtac gggttgagta caaacgtggc catcacgata gatggttctg tttttcgaac 6840 agatgtaaat cgaagacgtc gtgcagtacg gtaaactgca catccatcct ctagtttcta 6900 ttgatgtaat tgaaaaaaga tcaatatttt acgatgatga ggagcgactg gtggtcgcgg 6960 tagctttgac acagctacta agaggggttc aaatcccccc ccgaaccgga gggtaatccg 7020 gccca 7025 //