Dbfetch
ID AJ251934; SV 1; circular; genomic DNA; STD; VRL; 3033 BP. XX AC AJ251934; XX DT 17-DEC-2001 (Rel. 70, Created) DT 23-JAN-2002 (Rel. 70, Last updated, Version 2) XX DE Stork hepatitis B virus, complete genome, isolate STHBV-1 XX KW complete genome; core antigen; polymerase; surface antigen. XX OS Stork hepatitis B virus OC Viruses; Hepadnaviridae; Avihepadnavirus. XX RN [1] RP 1-3033 RA Pult I.; RT ; RL Submitted (17-DEC-1999) to the INSDC. RL Pult I., Molecular Genetics and Microbiology, The University of New Mexico RL School of Medicine, 900 Camino de Salud, NM, 87111, USA. XX RN [2] RX DOI; 10.1006/viro.2001.1115. RX PUBMED; 11601923. RA Pult I., Netter H.J., Bruns M., Prassolov A., Sirma H., Hohenberg H., RA Chang S.-F., Froelich K., Krone O., Kaleta E.F., Will H.; RT "Identification and analysis of a new hepadnavirus in white storks"; RL Virology 289(1):114-128(2001). XX DR MD5; 2babec30e3d428daf9cb813cbcf21e90. DR EuropePMC; PMC2620893; 19004940. DR EuropePMC; PMC4988138; 27334580. DR EuropePMC; PMC548436; 15708992. DR RFAM; RF01313; AHBV_epsilon. XX FH Key Location/Qualifiers FH FT source 1..3033 FT /organism="Stork hepatitis B virus" FT /host="white stork" FT /isolate="STHBV-1" FT /mol_type="genomic DNA" FT /country="Germany:Northern Germany" FT /db_xref="taxon:110944" FT CDS join(2530..3033,1..414) FT /product="preC/core antigen" FT /db_xref="GOA:Q8UYB4" FT /db_xref="InterPro:IPR002006" FT /db_xref="InterPro:IPR036459" FT /db_xref="UniProtKB/TrEMBL:Q8UYB4" FT /protein_id="CAC80812.1" FT /translation="MWSLRLHPSPFGAACQGIFTSTSLLFLVTVPLVCTIVYDTCLYMD FT VNASRALANVYDLPDDFFPQIDDLVRDAKDALEPYWKAETIKKHVLIATHFVDLIEDFW FT QTTQGMSQIADALRAVIPPTTTPVPDGYLISHNEAQELPLNDLFVNQEERIVNFQPDYP FT ITARIHTHLRVYTKLNEQALDKARRLLWWHYNCLLWGESNVTNYISRLRTWLSTPEKYR FT GKDAPTIEAITRPIQVAQGSRNQTKGVRKPRGLEPRRRKVKTTVVYGRRRSKSRGRRSS FT PSQRAGSPIPRNRENQSRSSSPRE" FT CDS 170..2542 FT /product="polymerase" FT /db_xref="GOA:Q8UYY1" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="UniProtKB/TrEMBL:Q8UYY1" FT /protein_id="CAC80811.1" FT /translation="MPQPLKQSLDQSKWLKAAEIKLRELENLVDLSLEEEKLKPQLSMG FT EDVQSPEGGDPLHPNVRAPLSHVIEKTKVDPPRLGNRDPARHKLGKLSGLYQMKGCEFN FT PDWKIPDISRTHINTEIVNECPSRNWKYLTPAKFWPKSISYFPVHAGVKPKYPEFQNCH FT ESLVNDYLSKLFEAGILYKRVSKHLVTFKGPSFSWEQPYLVPQHHGAYTSKIHNRQESR FT RRRIITATISRKNDPQRISGAYYNGRETAFNRSCYGSYRLSGRTENYAKSGSLARGHRE FT ETRIRQTSHYSSSSNHVDQRRRRESKTILQTISGEQTQTTKHGSTTTTRTTCSRSSPVE FT NKAWGPIAAGPISNPKEGSRRSHSEVAATSKVQEEDGSFLRGNTSWPNRITGRIFLVDK FT NSRNTTEARLVVDFSQFSKGKNAMRFPKYWSPNLTALRRIVPLGMPRISLDLSQAFYHL FT PLNPASSSRLAVSDGKQVYYFRKAPMGVGLSPFLLHLFTTAIGAEISRRFNVWTFSYMD FT DFLLCHPSARHLNSISHAVCTFLQEFGIRINFDKMTPSPVTTIRFLGYEISNQHLKIEE FT SRWNELRQVIKKIKVGQWYDWKCIQRLIGHLNFVLPFTKGNVEMLKPMYDACTHRVNFA FT FSSRYKILLYKLTMGVCKLTLKPKSSLPLPRVATDATLTHGAISHITGGSAVFTFSKVR FT DIHVQELLMVCLARLMIKPRCILTDSTYVCHRKFNKLPWHFAMYAKQLLTRLTLYYVPS FT KYNPADGPTRHKPPDWTAITYTPLSKHIYVPHRLCGP" FT CDS 792..1805 FT /product="preS/surface antigen" FT /db_xref="GOA:Q8UYY0" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/TrEMBL:Q8UYY0" FT /protein_id="CAC80813.1" FT /translation="MGHTQAKSTTDRRVEGGELLLQQLAGRMIPREFQGPITTAGKLPS FT IDHVMDHIDSVEELRTMQNQGHWPEGTGRRLGLDKPATTPPPAITWTREEDERAKQFFK FT QYQENRPKQPNTAPPPLPELHAADPPQWKIKPGDPLLQAQSLIPKKDPDVPILKLPQLP FT KYKKKMGASFGGILAGLIGLLVGFFLLTKILEILRKLDWWWISLSSPKEKMLCAFQSTG FT HQTSPHYVGSCPWGCPGFLWTYLRLSIIFLLILLVAAGLLFLTENKSIIFEKLQWESVS FT ALFSSIYLLLPSEPKSLVALTFGLFLIWTTSSSVTQVLVTLTQLATLSALFFKNSA" XX SQ Sequence 3033 BP; 932 A; 672 C; 606 G; 823 T; 0 other; catacccatc ttagagtata cactaaatta aatgaacaag cattggacaa ggctaggaga 60 ttgctttggt ggcattataa ttgtttgctc tggggtgaaa gtaacgtcac taattatatt 120 tctcggcttc gtacttggtt atccactcca gaaaaatatc gtggaaaaga tgccccaacc 180 attgaagcaa tcactagacc aatccaagtg gctcaaggca gcagaaatca aactaaggga 240 gttagaaaac ctcgtggact tgagcctaga agaagaaaag ttaaaaccac agttgtctat 300 gggagaagac gttcaaagtc ccgagggagg agatcctctc catcccaacg tgcgggctcc 360 cctatcccac gtaatcgaga aaaccaaagt agatcctcct cgcctaggga atagggaccc 420 cgcacgacat aaattgggaa aattatctgg gttgtatcaa atgaagggat gtgagtttaa 480 tcctgactgg aaaatacctg atatttcgag aactcatatc aatactgaaa ttgttaatga 540 gtgcccttca cgaaattgga aatatctgac tccagccaaa ttttggccca agagcatttc 600 ctattttcca gtccatgcag gagttaaacc caaataccca gaattccaga attgccatga 660 gtcattggtt aatgattacc taagcaagct ctttgaagca ggaatcctgt ataagcgtgt 720 gtctaaacat ttggtcactt ttaaagggcc tagtttttct tgggaacaac cataccttgt 780 cccgcaacat catggggcat acacaagcaa aatccacaac agacaggaga gtcgaaggag 840 gagaattatt actgcaacaa ttagcaggaa gaatgatccc cagagaattt caggggccta 900 ttacaacggc agggaaactg ccttcaatag atcatgttat ggatcatata gactcagtgg 960 aagaactgag aactatgcaa aatcagggtc attggcccga gggcacaggg aggagactag 1020 gattagacaa accagccact actcctcctc cagcaatcac gtggaccaga gaagaagacg 1080 agagagcaaa acaattcttc aaacaatatc aggagaacag acccaaacaa ccaaacacgg 1140 ctccaccacc actaccagaa ctacatgcag cagatcctcc ccagtggaaa ataaagcctg 1200 gggacccatt gctgcaggcc caatctctaa tcccaaagaa ggatccagac gttcccattc 1260 tgaagttgcc gcaacttcca aagtacaaga agaagatggg agcttccttc gggggaatac 1320 tagctggcct aatcggatta ctggtaggat ttttcttgtt gacaaaaatt ctagaaatac 1380 tacggaagct agattggtgg tggatttctc tcagttctcc aaaggaaaaa atgctatgcg 1440 ctttccaaag tactggtcac caaacctcac cgcattacgt aggatcgtgc ccttggggat 1500 gcccaggatt tctctggact tatctcaggc tttctatcat cttcctctta atcctgctag 1560 tagcagcagg cttgctgttt ctgacggaaa acaagtctat tattttcgaa aagctccaat 1620 gggagtcggt ctcagccctt ttctcctcca tctatttact actgccatcg gagccgaaat 1680 ctctcgtcgc tttaacgttt ggactttttc ttatatggac gacttcctcc tctgtcaccc 1740 aagtgctcgt caccttaact caattagcca cgctgtctgc acttttcttc aagaattcgg 1800 cataagaata aactttgaca aaatgactcc ttcacctgtg actacgatta gatttctggg 1860 atatgaaatc tccaatcaac atctcaagat tgaagaaagc agatggaatg aactgagaca 1920 agttatcaag aaaattaaag tgggacaatg gtatgactgg aaatgtattc aaagattaat 1980 tggacatttg aattttgttt taccttttac taaaggaaat gttgaaatgc tgaaacctat 2040 gtatgatgct tgtactcaca gggttaactt tgctttttct tctaggtaca aaatactctt 2100 gtataaatta actatggggg tttgtaaatt aactttgaaa ccaaagtcca gtttaccttt 2160 gccacgtgta gcaactgatg ctaccctaac acatggcgca atatcccata tcaccggcgg 2220 gagcgcagtg tttacttttt caaaggtcag ggacattcat gtacaggaat tgttaatggt 2280 ttgcctagct aggttaatga ttaaaccacg ctgtatcctc actgattcta cctatgtatg 2340 ccataggaag ttcaacaagc tgccatggca ttttgcaatg tatgccaagc aattattaac 2400 caggctgaca ttatactatg tcccaagtaa atataatcct gctgacggcc caaccaggca 2460 taaaccacct gattggacag ctattacata cacccctctc tcgaaacata tatatgtacc 2520 acataggcta tgtggtcctt aagattacac ccctctccat tcggagctgc gtgccaaggt 2580 atctttacgt caacctcgct gttgttcctt gtgactgtac ctttggtatg taccattgtt 2640 tatgatactt gcttatatat ggatgttaat gcttcaagag ctcttgcaaa tgtatacgat 2700 ctgccagatg atttctttcc acaaattgat gatttagttc gcgatgcaaa agatgctttg 2760 gaaccttatt ggaaagctga aacaataaag aaacatgttt tgatcgcaac tcactttgtg 2820 gacttgattg aggatttctg gcaaaccaca cagggtatga gccaaattgc agatgcactg 2880 agagctgtaa ttccacctac tacaactcca gtgcctgacg gatatttaat ttctcataac 2940 gaagctcaag aacttccact aaatgattta tttgtaaatc aggaagaacg gatagtaaat 3000 ttccaacctg actatcccat tacagctaga att 3033 //