ID AJ249939; SV 1; linear; genomic RNA; STD; VRL; 7490 BP. XX AC AJ249939; XX DT 04-JAN-2002 (Rel. 70, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Human calicivirus SLV/Bristol/98/UK gene for polyprotein and ORF2, genomic DE RNA XX KW ORF2; polyprotein. XX OS Sapovirus Hu/Bristol/1998/UK OC Viruses; Riboviria; Caliciviridae; Sapovirus. XX RN [1] RP 1-7490 RA Robinson S.J.; RT ; RL Submitted (30-SEP-1999) to the INSDC. RL Robinson S.J., Division of Cell and Molecular Medicine, University of RL Southampton, South academic block, Southampton General Hospital, Tremona RL Road, Southampton, S016 6YD, UNITED KINGDOM. XX RN [2] RX DOI; 10.1002/jmv.2219. RX PUBMED; 11992591. RA Robinson S.J., Clarke I.N., Vipond I.B., Caul E.O., Lambden P.R.; RT "Epidemiology of human Sapporo-like caliciviruses in the South West of RT England: molecular characterisation of a genetically distinct isolate"; RL J. Med. Virol. 67(2):282-288(2002). XX DR MD5; a3e4158aa7545cdd6ce8b8c61b85e7ca. DR EuropePMC; PMC1143638; 15919882. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2473265; 17385696. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3337238; 22361160. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3433708; 22973264. DR EuropePMC; PMC4284302; 25567221. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC4836733; 27092779. DR EuropePMC; PMC525163; 15528717. DR EuropePMC; PMC553994; 15727685. DR EuropePMC; PMC5864949; 29567738. DR EuropePMC; PMC5866260; 29508188. XX FH Key Location/Qualifiers FH FT source 1..7490 FT /organism="Sapovirus Hu/Bristol/1998/UK" FT /isolate="Bristol/98/UK" FT /mol_type="genomic RNA" FT /note="Sapporo-like" FT /db_xref="taxon:248942" FT CDS 14..6856 FT /product="polyprotein" FT /db_xref="GOA:Q8UZ80" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q8UZ80" FT /protein_id="CAC80626.1" FT /translation="MASKPFYPIEFNRKVETTVLFSAHLRVSGREEIFETKQDMYAHVC FT QVVAGVRREIMRRTPVVNPAFSAEGLLDAFASKPPVDINPDTTFRELFGIDPHEQFPLS FT ITDLAKLQGELVDAAHNPGHILRRHYSTDSLTKLINKITKYVPVQATLTEMQARRAHER FT ERADLFKELPLVDPEVTQQQKSYFYAMWRQVVKKGKEFFIPLVKCTSWRKKFSEPAEIV FT RQLLVHFCEGMRTQFNTNANYINLSLLAKLRPTVLTMIFQQHKNTYRGWLATITALVEV FT YSNLFQDMRETAVSAVSAITLLFESLKQFVEGVIDLVRGTFQAQGPTNCGWAAIAAGVI FT LILLKISGCPSVMGYWQRLLKVCAGVTTIAAAARAFTWVRDIIVEAERKARLKKYMART FT AALLELAASRDVTGTEELKRLLECFTQLIEEGTELIQEFGTSPMAGLARSYVSELETAA FT NGIRSTILLDTPRKVPVAIILTGPPGIGKTHLAQHLAAGFGKTSNFSVTLDHHDSYTGN FT DVAIWDEFDVDAQGKFVETMIGVVNTAPYPLNCDRVENKGKVFTSNYIICTSNYPTSVL FT PENPRAGAFYRRVTTVDVSSPVIDDWKKKNPGKKPPLDLYKKDFSHLRLSVRPYLGYNP FT EGDTLEGVRVKPILTSVDGLSRLMETKFKEQGNELRNLWITCPRDLVTPAASGLKSYMA FT ANRALAQVFAEPSSNEIAETCTSRIFVSANNPPPTFVGRHVKITAINPWDASLANSMLS FT MFETNTHIPAVTQREIMYRVWTPLIHMQTREPNTQMLPYINRVVPVTSSFDFVRGLRHH FT LGLCSIKGMWKAYQGWHSSATILEFLSKHMEDVTFPSNPECTVFRAADGDVIFYTFGSY FT ACFVSPARVPFVGDPPKTVHSNITRNMTWIETLRLLVETITESLAHFGPLLLMVHNVAY FT LTTRSQRDEEAKGKTKHGRGARHARRGGVSLSDDEYDEWRDLVRDWRQDMTVGEFVELR FT ERYALGMDSEDVQRYRAWLQLRAMRLGAGAYQHATIIGRGRVEDTIIRTQPMRAPRAPR FT STGYDEEAPTPIVTFTSNGDHVGYGCHIGNGVVVTVTHVAAAADAVEGLEFSVRKTEGE FT TTWVNTPLGHLPHYQLGDGAPVYYSTRLHPVTTIAEGTYETPNITVHGFHLRIINGYPT FT KRGDCGTPYFDSCRRLVGLHAATSTNGETKLAQKVSRVSKVENAFAWKGLPVLRGPDCG FT GMPTGTRYHRSPAWPEQLSSETHAPAPFGAGDPRYNFSQVEMLVTGLKPFSEPTPGIPP FT ALLQRAATHTRTYLESIVGTHRSPNLTYNEACALLDRSTSCGPFIAGQKGDYWDEDRQC FT YTGVLAEHLGKAWDAANRGIAPQNAYKLALKDELRPIEKNQQGKRRLLWGCDAGATLVA FT TAAFKGIATRLQAVAPMTPVGVGINMDSYQVEVLNESLKGGVVYCLDYSKWDSTQHPAV FT TAASLAILERLSEATPITTSAVELLSSPARGHLSDIIFVTKSGLPSGMPFTSVVNSLNH FT MTYFAAAVLKAYEQHGAPYTGNVFQVETVHTYGDDCIYSLCPATASIFETVLANLSAFG FT LRPTAADKTDKIAPTHTPVFLKRTLTCTPRGIRGLLDITSIRRQFFWIKANRTTDISSP FT PAYDREARSVQLENALAYASQHGHAIFEEIAEIAKRTAQSEGLVLTNVNYDQALATYEA FT WFIGGTGTGQDSPSEETTKLVFEMEGLGQPQSQRDQQVMEQVVTPQDTIGPTSALLLPT FT QVETPNASAQRVELAMATGAVTSNVPNCIRECFAAVTTIPWTTRQAANTFLGAIHLGPR FT INPYTAHLSAMFAGWGGGFQVRVTISGSGLFAGRAITAILPPGVNPAAVQNPGVFPHAF FT IDARTTDPILINLPDIRPIDFHRVDGDDATASVGLWVAQPLINPFQTGSVSTCWLSFET FT RPGPDFDFCLLKAPEQEMDNGISPANLLPRRLGRSRGNRLGGRVVGLVVVAAAEQVNHH FT FGANSTTLGWSTLPIEPIAGAVSWYDDNNEHTKIRGLLSAQGKGIIFPNIVNHWTDVSL FT SAKTSGQTTIPTAADNLNNSPGAAGPVVMFENNGDVNESTANHGILTAASHDFTSLSQT FT FDAAGLWVWMPWTRNKPDGRTNTNVYITPTWINGNPARPIHEKCTNMVGTNFQFGGTGT FT NNIMLWQEQHFTSFPGAAEVYCSQLESTAEMFQNNVVNIPANQMAVFNVETAGNTFQIG FT ILPNGYSVTNAAIGTHQLLDYETSFRFVGLFPQSTSLQGPNGNAGRAVRFLE" FT CDS 6856..7350 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/TrEMBL:Q8UZ79" FT /protein_id="CAC80627.1" FT /translation="MSWFTGAALAAGSVVDMAGTISSIVAQHRQLDLMAQANRIQQDWV FT NRQEALITRGQDISRDLAVNGTAQRVDSLVKAGFTPVDARRLAGGTESVQYGLLDRPIL FT QRSVLSGISETRHLQSVQGALSAFKNGSSYGSPSRPRGLRQPKLSGFTTKVNTRPQTPS FT D" XX SQ Sequence 7490 BP; 1865 A; 2047 C; 1866 G; 1712 T; 0 other; gtgattggtt ggtatggctt ctaagccatt ctacccaatt gagttcaacc gtaaggttga 60 aacaacagtc ctcttctctg ctcacctcag ggtgagcggg agagaggaaa tttttgaaac 120 caaacaggac atgtacgccc atgtttgcca agtggtcgcc ggggtgcggc gcgagataat 180 gcgtcgcacc ccggtggtca accccgcttt cagtgcggag gggctcctag atgcctttgc 240 atccaaaccc ccagtggaca ttaaccctga caccacattt cgtgagttgt ttggaataga 300 tccacatgaa caattcccat tgtccatcac tgatttggcc aagttacagg gtgagcttgt 360 ggatgcagcg cacaacccag gtcacatcct gcgtcgtcac tactccaccg attcgctcac 420 caaactaata aacaaaatca ccaagtacgt ccccgttcaa gctactttaa ctgagatgca 480 agcacgaagg gcgcatgaga gggaacgagc ggacctattt aaggaactgc cgttagtcga 540 tcctgaagtg acccagcaac agaagtccta cttttacgcc atgtggcgac aagtggtaaa 600 gaagggcaag gagtttttca tacccctggt aaagtgtaca tcatggagga aaaagttctc 660 agaaccagct gagattgtgc gccaactcct tgtgcacttt tgtgaaggca tgcgcacaca 720 atttaacaca aatgccaact acatcaattt gtccctcctg gcaaaattgc gacccacggt 780 tttgacaatg attttccaac agcataaaaa cacttaccgt ggttggctcg ccaccatcac 840 agcccttgtt gaggtctatt caaatttgtt ccaggacatg cgtgaaaccg cagtatctgc 900 ggtgtccgca atcacgctcc tttttgagtc attgaagcag tttgtggaag gagtcattga 960 tcttgtcaga ggcactttcc aggcgcaggg ccccacgaac tgtgggtggg ccgccattgc 1020 cgctggtgtt attctaatcc tcctcaagat ctctggctgc cctagtgtta tgggatattg 1080 gcagcgcttg ttaaaagtgt gtgccggtgt cacgaccata gctgcagctg cgagagcgtt 1140 cacctgggtt cgtgacatca ttgtggaggc agaaagaaag gctcgcctca agaaatacat 1200 ggcccgcacc gctgccctgt tggaacttgc tgcatcgcga gatgtcactg gcacggaaga 1260 actaaaacgg ttgctagaat gttttaccca gctcattgag gagggcacgg agctgattca 1320 ggagtttggg acatcaccga tggcagggct tgcacgatct tatgtcagtg agcttgaaac 1380 tgccgccaat ggcatcagaa gtacaatcct cttagacacc ccaaggaagg tcccagtggc 1440 aataatctta actggtccac cgggtatagg aaaaacacac cttgcacagc acttagccgc 1500 tggttttggc aaaacatcaa acttctctgt cacgcttgat caccatgact cctacacagg 1560 caatgacgtg gccatctggg acgagttcga tgtggacgcc cagggtaagt ttgtggagac 1620 aatgattggt gtggtaaaca ccgcaccata ccccttaaat tgtgacagag tggaaaataa 1680 aggcaaagtc ttcacatcca attacattat atgtaccagc aattacccca cctctgtttt 1740 gccagaaaac ccgagggctg gagcctttta ccgccgcgtc acgacggtcg atgtgtcatc 1800 ccctgttatt gatgattgga aaaagaaaaa ccctggtaag aaacctccat tggacttgta 1860 caagaaagat ttctcacatt tgcgcctttc cgtccggcca taccttggtt acaatcccga 1920 gggggacact ctggagggcg ttcgtgtgaa acctatccta accagtgtgg acggcctgtc 1980 tcggctcatg gaaactaagt tcaaagaaca gggcaatgag ttgcgcaacc tttggatcac 2040 gtgcccccgt gacctagtga cacctgcagc atctgggctg aaatcataca tggctgctaa 2100 cagggcgctg gcacaagttt tcgcagaacc ttcttccaac gaaattgcgg aaacgtgcac 2160 gtctagaatt ttcgtgtctg ccaataaccc tccccccacc tttgtgggca gacacgtgaa 2220 aataacagcc atcaatccct gggacgcatc ccttgctaac tcaatgttgt caatgtttga 2280 gaccaacact cacataccag cagttaccca aagggagatc atgtaccgtg tttggacgcc 2340 cctaatacac atgcaaacac gggaaccaaa tacccagatg ctcccctaca tcaatcgggt 2400 ggtgccagtc acctcttcat ttgactttgt tcgtgggttg cgccaccacc ttggattgtg 2460 ttctatcaaa ggcatgtgga aagcgtacca gggatggcac agctccgcga caatcctgga 2520 gttcctgtcc aagcacatgg aagatgttac attcccctcc aatccggaat gtactgtgtt 2580 tcgagctgcg gacggagatg tcatctttta cacatttggg tcctatgcct gctttgtctc 2640 cccagcacgg gttccatttg tcggggaccc accaaaaacc gtccactcca acatcacacg 2700 caacatgacg tggattgaaa ccttgcgact gcttgttgaa acaatcacgg agagtttggc 2760 ccactttggc ccgctgctgt tgatggttca taacgtggca tacttgacaa ctaggtcaca 2820 acgtgacgag gaggccaaag gcaaaactaa acatggtagg ggagccagac acgcacgacg 2880 tggtggagtg agcttgtcgg atgacgagta tgatgagtgg cgtgaccttg tgcgtgactg 2940 gagacaggac atgaccgttg gggagtttgt cgagttgcgc gagcgctacg cccttgggat 3000 ggactcagag gacgtgcaac ggtaccgggc atggctgcaa cttcgtgcca tgcggctagg 3060 cgcaggtgcc taccagcatg caaccatcat tgggcgcgga cgtgttgagg ataccatcat 3120 ccgcacacaa cccatgcgtg ctccacgtgc ccctcgttcc accggatatg atgaggaagc 3180 cccaacaccg attgtcacct ttaccagcaa cggggaccat gtgggttacg gttgccacat 3240 tggcaacggt gtggtggtga cagtaactca tgtggctgcc gctgcggacg ccgtggaggg 3300 tctggaattc tcggttagga aaaccgaggg tgaaaccaca tgggtgaaca ccccccttgg 3360 ccacctgcca cactaccaac tgggtgatgg ggcaccagtt tactattcaa ctcgattgca 3420 ccccgtcacc acaattgcag aaggtacata tgaaactcct aacatcacag ttcatgggtt 3480 ccatctacgc atcatcaatg gttaccccac aaaacgtgga gactgcggca cgccgtactt 3540 cgactcatgt cgaaggctgg tgggcctaca tgccgccacg tcaaccaatg gggagaccaa 3600 gttggcacag aaagtaagtc gagtttcaaa ggtggaaaat gcttttgcct ggaagggctt 3660 gcccgtctta cgaggccctg attgtggtgg tatgcccaca ggaacaaggt atcatcggtc 3720 cccagcctgg ccagaacagc tctcaagtga aacccatgcc ccagccccat ttggtgccgg 3780 tgacccccgt tacaatttct cccaagtaga aatgttggtc acagggttga aacctttttc 3840 agaacccacc cctgggatac cccctgccct cctgcagcgg gcagccacac acacccgtac 3900 atacctggag tcaatagtcg gcacacaccg atcccctaat ttaacttaca acgaagcatg 3960 tgccttattg gatcgcagca catcttgtgg tccgttcatt gcaggccaaa agggggatta 4020 ctgggatgaa gatcgccagt gttacacagg agtgttggct gagcacctcg gtaaggcctg 4080 ggatgccgcc aaccgaggca ttgctccaca aaatgcctac aaactggccc ttaaagatga 4140 gcttcgacca attgaaaaga accaacaagg caagcgccga ctgttgtggg gttgtgacgc 4200 tggggcaact ttggttgcca cagcagcttt caaagggatt gctacgcgcc tgcaggcagt 4260 tgcacccatg acacctgttg gcgttggcat taacatggac agttaccagg tagaggtgct 4320 taatgaatcc cttaagggcg gtgtcgtgta ctgcctagac tacagcaagt gggattccac 4380 tcaacacccg gccgttacag ctgcgtcctt ggcaatcctt gagcggctgt ctgaagcaac 4440 accaataaca acatcggccg tagagttgct ctcatcacca gcacgtggcc acttgagtga 4500 catcatcttt gtgacaaagt ctggactccc ctcgggcatg ccattcacca gtgttgtcaa 4560 ctctcttaac catatgacat actttgctgc tgcagtgttg aaagcctatg aacaacatgg 4620 ggcgccttac actggtaatg tgtttcaggt ggaaactgtt cacacttatg gtgatgattg 4680 catttactcc ttgtgcccgg caaccgcttc catctttgaa actgttttgg ccaacctcag 4740 tgcctttggt ctacggccca ccgctgccga taaaacagac aaaatagccc ccacccacac 4800 accagtcttt ttaaagcgaa ctcttacctg tacaccaaga ggtatccgtg ggctactcga 4860 catcacgtca atcaggcggc aattcttctg gattaaggct aaccgcacca cagacatatc 4920 atccccaccc gcctacgaca gggaagcccg gagtgtgcag cttgaaaatg ccctggctta 4980 tgcttcacaa catggccacg caatctttga ggagattgcc gaaattgcca agaggacggc 5040 acagtcagaa gggttagtgc tcaccaatgt gaactatgac caggctctcg ccacctacga 5100 agcatggttt ataggtggta caggcaccgg ccaagatagc cccagtgaag agactaccaa 5160 attagtgttt gaaatggagg gcctgggcca gccacagtcc caaagggacc aacaggttat 5220 ggaacaggtt gttacccccc aggacaccat tggaccaacg agtgcacttc tattgcccac 5280 tcaagttgag acaccaaatg ctagtgctca gcgtgtggaa cttgcaatgg ccacaggggc 5340 agtgaccagc aatgtgccca actgcatccg ggagtgtttt gctgcggtca ccacaatacc 5400 atggaccacc cggcaagcag caaacacctt tctcggtgcc atacatctgg gcccacgcat 5460 taacccctac actgcacacc tgagtgcaat gtttgctggt tggggggggg gctttcaggt 5520 gcgggtcaca atctcaggtt ccgggctctt tgctggtcgg gccattactg ctatcctgcc 5580 accaggtgtc aacccggctg ctgtccagaa cccgggtgtc ttcccccatg cgttcattga 5640 cgctcgcaca accgacccca tactgatcaa tttgcccgac atccggccca ttgattttca 5700 ccgtgtagat ggggacgacg cgacagcgtc cgtggggtta tgggtcgcgc agcccttgat 5760 caacccgttt caaactggct ccgtttccac atgttggctc agtttcgaaa cacggcctgg 5820 ccctgacttt gacttttgtc tcctcaaggc ccccgagcag gaaatggaca atgggatatc 5880 acctgccaac ctgttgccac gccgcctcgg gcgttcccgg ggcaaccgcc tcggcggtcg 5940 tgtcgtgggg ctggttgtgg tggctgcggc cgagcaagtt aaccaccact tcggcgcaaa 6000 ctccaccaca cttggttggt caacactgcc tattgagcca attgcgggag cagtttcttg 6060 gtacgatgat aacaatgaac ataccaaaat acgggggctc ttgagcgcac aaggaaaggg 6120 tatcatcttc ccaaacattg tcaaccattg gacagatgtg tcattgtccg ccaagacctc 6180 ggggcagacc accatcccca cagctgctga caacctcaac aacagccctg gagcagcagg 6240 cccggtggtt atgtttgaaa acaatggaga tgtcaatgag tccactgcaa accatggcat 6300 actgaccgct gcgtcgcatg acttcacatc actgtcccaa actttcgacg cagcagggct 6360 atgggtttgg atgccatgga cccgaaacaa accagacggg cgcacgaaca caaatgtcta 6420 catcactcca acttggatta atggcaaccc tgcccgcccc atacacgaga aatgtaccaa 6480 catggtcggg accaatttcc aattcggtgg tactgggaca aacaacatca tgttatggca 6540 ggagcaacac ttcacatctt ttccaggtgc tgcagaggtg tactgttcac aactggagag 6600 cacagcagaa atgtttcaaa acaatgtggt caacatcccc gcaaaccaaa tggcagtctt 6660 caatgtggaa actgcaggta acacatttca gattgggatc ttgccaaatg gctattcagt 6720 caccaacgcg gcaattggca cacaccaact ccttgactac gagaccagtt ttagatttgt 6780 tggacttttc ccccaaagca cttcacttca ggggcccaat gggaacgctg gacgggccgt 6840 caggttctta gaataatgtc ttggtttact ggagcagcct tagccgccgg ctctgtcgtg 6900 gacatggccg gcacaatatc ttcaattgtt gcacaacaca gacaacttga tttgatggca 6960 caggcaaatc gcatacaaca ggattgggta aacagacaag aggcactcat cacacgagga 7020 caggatatct cccgcgacct tgctgtcaat ggaacggcgc aacgcgtcga ctcgctggtc 7080 aaggcggggt tcacccctgt tgatgctcgc agactggcgg gcggcacgga aagcgtgcag 7140 tacggcctgc tggacagacc tatactgcaa cgttcagtgc tgtcgggcat ctcagagact 7200 cggcacttac aatctgtgca aggtgccttg agtgctttta aaaatggatc cagctacggg 7260 agcccctccc gcccccgcgg gcttcgtcaa cccaaattat caggcttcac caccaaagtt 7320 aacactaggc cccagacccc cagtgactaa tgtgtagtga tgattaggtt tcctcagata 7380 atcaaatttc catttattta gttttctttg cttttctttt cttttcccat ggtaccacac 7440 gcgttcgggt ggacaattgt ggttaagcga ccacagccat gaccctctgg 7490 //