ID AJ249740; SV 1; linear; genomic RNA; STD; VRL; 4770 BP. XX AC AJ249740; XX DT 23-SEP-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Tomato bushy stunt virus genomic RNA, statice isolate, complete genome XX KW cp gene; 19K gene; 22K gene; 33K gene; 92K gene; capsid protein; KW complete genome; movement protein; symptom modulating protein; KW RNA-dependent RNA polymerase. XX OS Tomato bushy stunt virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Procedovirinae; Tombusvirus; OC Tombusvirus lycopersici. XX RN [1] RP 1-4770 RA Russo M.; RT ; RL Submitted (20-SEP-1999) to the INSDC. RL Russo M., Centro Studio Virus e Virosi Colture Mediterranee, Consiglio RL Nazionale delle Ricerche, Via Amendola 165/A, 70126 Bari, ITALY. XX RN [2] RA Galetzka D., Russo M., Rubino L., Krczal G.; RT "Molecular characterization of a tombusvirus associated wiyh a disease of RT statice (Goniolimon tataricum (L.) Boiss.)"; RL J Plant Pathol 82:151-155(2000). XX DR MD5; 3360d4fdd5b4ccf383422b820ef98308. DR EuropePMC; PMC136688; 12438600. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC3234231; 22174683. DR EuropePMC; PMC4690014; 26512705. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX FH Key Location/Qualifiers FH FT source 1..4770 FT /organism="Tomato bushy stunt virus" FT /host="Goniolimon tataricum" FT /lab_host="Nicotiana benthamiana" FT /isolate="statice" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:12145" FT 5'UTR 1..168 FT CDS 169..2625 FT /transl_except=(pos:1057..1059,aa:OTHER) FT /gene="92K" FT /product="RNA-dependent RNA polymerase" FT /function="virus genome replication" FT /db_xref="GOA:Q9IW60" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q9IW60" FT /protein_id="CAB56480.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSITKFVIELLKTDCAAKWEWFMKRRQRGDYIIPLSIASLPIIPLLSYTTRV FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFR FT LRTEARTHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK FT IAQVARAKVGYLRNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPNAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVERNGKLTRTPQPTKGAFGRLSPFRKAV FT CEKVGVAHRYGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTAK FT SDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDGVFGETTCIKGYTADEVGAIFREK FT WDRFDKPVAIGLDASRFDQHCSMEALQYEHSFYRAMYPGNKLLSKLLEWQLHNKGKGYV FT PDGTITYRKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLIVER FT RNLKQVQRTLPEYFLNLGYTMKVEAPVFQMEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRKAWSNAQHHGGLALSAGIPVVERFYSRFTLYDTPRKHQRIDTVTN FT VHKWRGSGGSYVVTPEARASFWAAFGLTGDEQLALEDRLDRWEMDLFGIEGVDAHEPSI FT LDSAVA" FT CDS 169..1059 FT /gene="33K" FT /product="putative RNA-dependent RNA polymerase" FT /function="virus genome replication" FT /db_xref="GOA:Q9QBL6" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q9QBL6" FT /protein_id="CAB56479.1" FT /translation="METIKRMIWPKKEIFVGDFAIGVNRTAPVDIFQLVCRVVLRYMRT FT GKIECDSDSITKFVIELLKTDCAAKWEWFMKRRQRGDYIIPLSIASLPIIPLLSYTTRV FT RAVSVKAFGNELSFNIRVPRPSVPKKGLLLRLAAGLALAPICALAMYATLPREKLSVFR FT LRTEARTHMEDEREATDCLVVEPARELKGKDGEDLLTGSRMTKVTASTGRPRRRPYAAK FT IAQVARAKVGYLRNTPENRLIYQRVMIEIMDKDCVRYVDRDVILPLAIGCCFVYPDGVE FT ESAALWGSQESLGVK" FT CDS 2649..3815 FT /gene="CP" FT /product="capsid protein" FT /function="coating the virus genome" FT /db_xref="GOA:Q9QBL5" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QBL5" FT /protein_id="CAB56481.1" FT /translation="MAMTTRNNNNVLSVSKKQLGVLAASAAAGALRNYISESGPALLQS FT AVGLGKKALNKVRNRRKQGNQQIITHVGGVGGSIMAPVAVSRQLIGSKPKFTGKTSGSV FT TVTHREYLTQVNNSSGFVVNGGIVGNLLQLNPLNGTLFSWLPAIASNFDQYSFNNVVLH FT YVPLCGTTEVGRVALYFDKDSQDLEPADRVELANFGVLKETAPWAEAMLRIPTDKVKRY FT CNDSATVDQKLIDLGQLGIATYGGAGTNAVGDVFISYSVTLYFPQPTNTLLSTRRLDLT FT GSLADAAGPGYLVLTRTPTVLTHTFRATGTFNLFGGLRCLTSVTLGATGAVVINDILAI FT DNVGTASAYFLNCTVSSLPATVTFTTTGISSATVNVVRSTRANVVNLL" FT CDS 3851..4420 FT /gene="22K" FT /product="movement protein" FT /function="cell-to-cell virus movement" FT /db_xref="GOA:Q9QBL4" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q9QBL4" FT /protein_id="CAB56482.1" FT /translation="MDTEYEQVNKPWNELYKETTLGNKLMVNVGMEDQEIPLLPSNFLT FT KVRVGLSGGYITMRRFRIKIIPLVSRKAGVSGKLYLRDISDSTGRKLHCTESLDLGREI FT RLTMQHLDFSVSTRSDVPIVFGFEELVSPFLEGRELFSISVKWQFGLSKNCYSLPQSKW FT KVMYQEDALKVLKPTKKKASKTGSSV" FT CDS 3883..4401 FT /gene="19K" FT /product="symptom modulating protein" FT /function="modulating symptom severity" FT /db_xref="GOA:Q9QBL3" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q9QBL3" FT /protein_id="CAB56483.1" FT /translation="MERAIQGNDAREQAYGERWNGGSGDSTSPFKLPDESPSWTEWRLH FT NDETISNQDNPLGFKESWGFGKVVFKRYLRFDGTETSLHRVLGSWTGDSVNYAASRFLG FT FDQIGCTYSIRFRGISVTISGGSRTLQHLSEMAIRSKQELLQLTPVKVESNVSRGCPKG FT VETYEEESE" FT 3'UTR 4421..4770 XX SQ Sequence 4770 BP; 1252 A; 1006 C; 1309 G; 1203 T; 0 other; agaaattccc caggatttct cgacctagtt cgttgttatc tggtgacttg cgctaactgt 60 tgctttgcgt agagaatttc tctcctttgt taattctttg acttaggggt ttgaaggttg 120 ggtctacctt tcggggggat aaattgtaac ttccaacaaa caagcaacat ggagaccatt 180 aagaggatga tttggcctaa gaaagagatt tttgtgggtg atttcgcgat cggggttaat 240 aggacggcac cggtggacat cttccagttg gtgtgtcgtg tggttctgag atacatgagg 300 acagggaaaa tagagtgtga ttctgacagc ataacaaagt tcgtgattga gcttttaaag 360 actgattgtg ctgccaaatg ggagtggttc atgaagagac ggcagagggg tgattacatc 420 atccctctat ctatagcctc cctcccaatc ataccgctgt tgagctatac cacgagggta 480 cgcgcagtct cagtcaaggc attcggtaat gagttatcat tcaacatccg ggtgcctaga 540 ccatctgtac ctaagaaagg gttgctcctc agactggcgg caggtttagc gctagcacct 600 atatgcgcgc tagccatgta cgctacccta cccagggaaa aactgtcggt atttaggctt 660 aggactgagg cacgaacaca catggaggat gagagagaag cgacagattg tctggtggtt 720 gagccggcac gggaacttaa gggtaaagat ggtgaggatc tcctcactgg tagtaggatg 780 actaaggtga ctgcatcaac aggacgccct cgcagaaggc cctacgcggc aaagattgcg 840 caggtggcga gagcgaaggt gggttatcta agaaatactc ctgagaacag actcatctac 900 cagcgggtga tgatcgagat catggacaaa gattgcgtca ggtatgttga cagggatgtc 960 atattgccat tggctatagg atgctgtttt gtctatccgg atggagtgga ggagtcggcg 1020 gcactatggg gttcacagga atccctaggt gtcaaatagg gaggcctagt acgtctacct 1080 ggggttgtga cacagatcaa tcgagatatc ccatctgatg tgttactacc tcaggaggtg 1140 ctagaggttc gtacaggacc tcccaatgct aaggaccgta atatatttat ggttgctggt 1200 tgcccatcac aggcgcggtt cttagtacac aatcactgcc tgaaaaacct caaaaggggt 1260 cttgtggaga gagtcttctg tgtggagaga aacgggaagc tcactcgcac tccacaacct 1320 accaaaggag cctttggacg tctttccccg ttcaggaaag cagtttgtga gaaggttggg 1380 gtggcccacc gatatgggta tgatggtttc ctgtcatact acagtggtgc gaaactccgt 1440 acttacacac gagctgtgga gagtctgcat atcactcctg tttctgagag ggatagtcat 1500 ctgactacct tcgtgaaagc agagaagata tcgacggcca aaagtgaccc agcacccagg 1560 gtaatacagc ctcgaaaccc taggtacaat gtggaacttg gaagatatct gcggcatatg 1620 gaatccaagc tgatgaaagc tgttgatggc gtgttcggag agacaacatg catcaaagga 1680 tataccgctg atgaggtggg tgcaatcttt cgagagaagt gggataggtt tgataaacct 1740 gtagccattg gcctcgatgc atccaggttt gatcaacact gttccatgga agctttgcag 1800 tacgagcata gcttctacag ggccatgtac cctggcaaca agctgttaag caagttgttg 1860 gaatggcagc tccataataa aggtaaaggt tacgtcccgg acggaaccat tacgtatcga 1920 aaggagggct gccgcatgag tggggatata aacacctcgt tggggaatta cctattgatg 1980 tgtgcaatgg tacatgggta catgcgtcat ctggggataa atgaatttag tctggcaaac 2040 tgtggggatg actgtgttct aatcgtggaa cgtaggaatc tcaaacaggt gcagaggacg 2100 ttacctgagt atttcctgaa tctaggatat acaatgaagg tggaggcccc tgtgtttcaa 2160 atggaagagg ttgaattctg ccaggcacac cctgtacagt ttcaaggtgg ttggaagatg 2220 gtccgtaatg tccgcactgc tatgagcaaa gatgtgcact gtgttaataa catacgcgat 2280 ttggcgacga ggaaagcctg gagcaacgct cagcatcacg ggggtctggc gcttagtgcc 2340 ggcataccgg ttgttgagcg attctactcc aggtttacac tttatgatac tcctcgtaaa 2400 catcaacgta ttgacactgt cactaatgtt cacaagtggc gcggctctgg tgggagctat 2460 gttgtgactc ctgaagctag ggcaagcttt tgggctgcct ttggtttgac gggggatgag 2520 caactggctt tagaggatcg tctggataga tgggagatgg atctatttgg aattgaaggt 2580 gttgacgctc acgagcccag catccttgat tccgccgtag catgaccaag tacacacaaa 2640 cacaagagat ggcaatgaca acgagaaata acaacaatgt gctctctgtg agcaagaaac 2700 agttgggggt cctggcagca tctgccgctg cgggggctct gcgtaattat attagtgaga 2760 gtggcccggc actgctacaa tcggcagtgg gtttgggtaa gaaggccttg aataaggtga 2820 ggaatcggag gaaacaggga aatcagcaga tcattactca tgtaggcggc gtcgggggct 2880 caatcatggc tcctgtggca gtatccaggc aactaattgg tagtaagccg aaatttaccg 2940 gaaagacatc tggatctgtc acggttacgc accgcgagta ccttacgcaa gtaaacaact 3000 cttcaggatt tgtagtaaat gggggtattg tcggcaattt gttacaactc aacccgctga 3060 atggtacact gttctcatgg ttgccggcca tagcatccaa ttttgatcag tactcgttca 3120 acaatgttgt gttacattat gtccccctat gcggtactac tgaagtcggg cgtgtagcgc 3180 tatactttga taaggattca caagatcttg aacctgctga tagagtggag ttggcgaact 3240 tcggtgttct aaaggagaca gccccttggg ctgaggcaat gctgcgcata cccactgaca 3300 aagtgaagag atactgtaat gacagtgcta cagttgatca gaaacttata gatttgggac 3360 agcttggtat tgctacctac ggaggggcag gcactaacgc tgtgggtgat gtgtttatct 3420 cctacagtgt tacattgtac tttcctcaac ccaccaacac cctgttgagt acacgacggc 3480 ttgacctcac cggatctttg gctgatgctg cgggacctgg gtatcttgtg ctaacgagaa 3540 cacccacggt cttaacgcac acatttaggg cgactggcac cttcaacctc tttggagggc 3600 taaggtgttt aaccagtgtc actctcggag ctacgggggc tgtggttatt aatgacatac 3660 ttgcaattga taatgttggt acagccagtg cctacttcct caattgcacg gtatcttctc 3720 tgccagccac cgtgacattt actacaactg gaatatcctc cgccactgtt aatgtggtgc 3780 gtagtacacg agctaatgtt gttaacttac tatgatctct tgtgaggggc ctcttgaaca 3840 agaccagttc atggatactg aatacgaaca agtcaataaa ccatggaacg agctatacaa 3900 ggaaacgacg ctagggaaca agcttatggt gaacgttgga atggaggatc aggagattcc 3960 acttctccct tcaaacttcc tgacgaaagt ccgagttgga ctgagtggcg gctacataac 4020 gatgagacga tttcgaatca agataatccc cttggtttca aggaaagctg gggtttcggg 4080 aaagttgtat ttaagagata tctcagattc gacgggacgg aaacttcact gcacagagtc 4140 cttggatctt ggacgggaga ttcggttaac tatgcagcat ctcgatttct cggtttcgac 4200 cagatcggat gtacctatag tattcggttt cgaggaatta gtgtcaccat ttctggaggg 4260 tcgagaactc ttcagcatct cagtgaaatg gcaattcggt ctaagcaaga actgttacag 4320 cttaccccag tcaaagtgga aagtaatgta tcaagaggat gccctaaagg tgttgaaacc 4380 tacgaagaag aaagcgagta agacaggctc ttcagtctga gttcgcggaa acgagtgtga 4440 atctgacaac gtatgcaggt tactcgtgtt gggttctgga tgttatgatg acgagtcgtc 4500 gggctccgca ctgggtttgg tcacccaggg gatggagata tggaaagggt ctcgtgtgct 4560 atcagtcggt cgaaagacgc gcttgcaaca tgggcctata accggataag tcatagcaat 4620 accagccaac atgaattgga tgcctattta cgagaatcgg acgtcacttg tggaaacgtg 4680 cccagacacg gttgatctca cccttcgggg gggctataga gatcgctgga agcactaccg 4740 gacaaccgga acattgcaga aatgcagccc 4770 //