ID AJ249447; SV 1; linear; genomic RNA; STD; VRL; 5895 BP. XX AC AJ249447; XX DT 16-FEB-2000 (Rel. 62, Created) DT 23-DEC-2002 (Rel. 74, Last updated, Version 3) XX DE sugarcane yellow leaf virus complete genome, cultivar CP65-357 XX KW ORF0; ORF1; ORF2; ORF3; ORF4; ORF5; protease; capsid protein. XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Sobelivirales; Solemoviridae; Polerovirus. XX RN [1] RP 1-5895 RA Smith G.R.; RT ; RL Submitted (13-SEP-1999) to the INSDC. RL Smith G.R., David North Plant Research Centre, Bureau of Sugar Experiment RL Stations, PO Box 86, Indooroopilly, Queensland, 4068, AUSTRALIA. XX RN [2] RX PUBMED; 10859394. RA Smith G.R., Borg Z., Lockhart B.E.L., Braithwaite K.S., Gibbs M.J.; RT "Sugarcane yellow leaf virus: a novel member of the Luteoviridae that RT probably arose by inter-species recombination"; RL J. Gen. Virol. 81(Pt 7):1865-1869(2000). XX DR MD5; f42d949bf46e3f59672720bb70ac6a59. DR EuropePMC; PMC4422679; 25946037. XX CC Related sequences: AF157029. XX FH Key Location/Qualifiers FH FT source 1..5895 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum sp. interspecific hyprid (sugarcane)" FT /cultivar="CP65-357" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT CDS 67..837 FT /product="hypothetical protein" FT /function="unknown" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:Q9JH80" FT /protein_id="CAB75432.2" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVXBYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCXSKRFVLEQDHIGPELFRTQLLQYAGLDVFQBVARLQDXLERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDDDDSGLETDFNN FT LSLGRPYINGLPPNEKIIFIHSNLVGYGPSSHDI" FT CDS 242..2194 FT /function="unknown" FT /note="ORF1" FT /note="similar to ORF1 of potato leaf roll virus" FT /db_xref="GOA:Q9JH79" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q9JH79" FT /protein_id="CAB75433.2" FT /translation="MAPTLPFTTGWSTXALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAXPSGLYSSKITSXPNFSELSYSSMLGWMFFKMWXDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVMAPLLTIYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGDSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANXMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKXTGTDGFYATVLSNTEKGYSGAPYWNGKSIXGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFXBADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAXSPPPDKPVENATAKEQTPAPTVEKAMVADXPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHINGKSPPXTSQGSGNAXNSPRYTIPQNRRAHNGESASSQXTQKWRPXSP FT VSGGXPSAPKPXRQV" FT CDS <1735..3453 FT /codon_start=1 FT /function="RNA-dependent RNA polymerase" FT /note="ORF2" FT /note="produced by predicted -1 translational frameshift of FT ORF1 gene product" FT /db_xref="GOA:Q9JH78" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9JH78" FT /protein_id="CAB75434.2" FT /translation="XADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASXPEQTAAERREEVTQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKXAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTXRQMVEDPKFLPLLTRLTWNRLQKMSQVBFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRBKIVPTDCSGFDWSVADWMLEDDMEVRNX FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEXEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 3648..4238 FT /product="putative capsid protein" FT /function="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9JH77" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9JH77" FT /protein_id="CAB75435.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT XIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3679..4131 FT /product="putative movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9JH76" FT /protein_id="CAB75436.2" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIX" FT CDS <4239..5678 FT /codon_start=1 FT /product="putative aphid transmission factor" FT /note="ORF5" FT /note="produced by translational readthrough of TAG stop FT codon of ORF3" FT /db_xref="GOA:Q9JH75" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q9JH75" FT /protein_id="CAB75437.1" FT /translation="VXDAPPTPTPTPTPPAPTPAPAXKYXGYQGVPXNIVKTRGNSEYL FT DVGPLENVTMYLWXDESWSIEQLSAGYRVNNRERAIPFVLFPVDKGKYSVFIQCEGFKA FT VKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYXTSDSNVPGHPDMKVNGGSFT FT DQLVERDXSCSFHLEVPQQGYFXLEAPPIEKSDHFNFVVSYANFTDKILEWGSISVAID FT EVNDGAYSRSKWDKTXAMSARLPTQVSAXSEVYTPEAPEQPTNEGTESMPPAPNPALGP FT DNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRESPIYAPPPPPSLXPTXADTL FT RQADKVRRALMANASRXASPPPTXXEVPXLGAXDTASXSGSLRGGSLRGNLGSRPSLPR FT VADSPPRSVSPXRSETSTLQGGSLSGGSLXGGNLXALPEATXEQRREYERLKNSQGXTV FT AKAHAKEHGYKPPKSSSSLFG" FT 3'UTR 5679..5895 XX SQ Sequence 5895 BP; 1549 A; 1490 C; 1380 G; 1324 T; 152 other; acaaaatata tcgggaggga aacccctgat atatttggac caagcctctg ayttgtaaac 60 tgctctatgc ttttcaacga attctctgtt gagggaatta aattcagagc acacgaaagc 120 acttcaccyg tctttcgtgg ggaggtttcc aggtgtttga cytactacag agtcttcgcc 180 tgyaagtggg ttgagttgac ctatcaagat ccactcacac gccatttagt acamrattac 240 tatggcccca acactcccgt ttacaactgg ctggagcaca twcgccttat tgttgtcact 300 atggtgccta ttytgctcct gccagacaca accattggac ggcacatcca tattaagaga 360 cagtacctcc agtctgtcct tttatggctt gcccgcaaca aactctacta tagagttaag 420 agatgccrtt ccaagcggtt tgtactcgag caagatcaca tcggmcccga acttttccga 480 actcagctac tccagtatgc tgggttggat gtttttcaar atgtggckcg attgcaagac 540 wttctcgaga gaggctacga cactttccga tcggttcttg gagtacacct tctcgaacac 600 gaaaggtttg ttagtcgaat tcttgaacaa cctattatgg aacctgatca agctgtacgt 660 ttatgctttc actatcataa cacgcttgat catgacgatg acgattctgg cctggaaacc 720 gattttaata atctgtctct tggtcgtcct tacatcaatg gtctaccacc taatgagaaa 780 attattttca ttcattcaaa tttggtgggt tatggcccct cttctcacga tatataggac 840 cgtcatgtgg attcacagaa ggttgttcgc ttcacgtggg gacgagaaaa tggtccaagg 900 tttcaaaagt tttgccgtcc ccatgtcacc accaggagac tcagtgcttg agatagtaca 960 ccctgatgat tctcacatgg gatatgcatc ctgtgttcga ttgaaaaacg gggaagaggc 1020 tctcatgaca tccgttcact gcataagcga ttctttcaaa gttcgctcgt tcaggaatgg 1080 tatcaagatc cctctaacgg aattccaagt rctgttgccc gccaatgyga tggatattgt 1140 tcttcttcga ggcccaccyg agtggaaatc catccttgga gccaaagcag cccatttcac 1200 tccagtcaac cagctcaaca aaggagctgt rtctttcttc attttcgata aggagtggat 1260 gatgcacaat gcaaarrtta caggaactga tggtttttat gccacagttc ttagtaacac 1320 tgagaagggc tacagtggcg ccccctaytg gaaygggaaa tctatartag gggtgcataa 1380 agggcaygtg tacggrgacg attccaagaa ttacaatctt atgtcgccga ttccccctgt 1440 caaggggtta acggcgccta attttgtgta tgagtctccg tctctacarg gagatgtctt 1500 tagsracgcc gacgtttcag acattgctga ttacgccgag gaggtgtatg agaaaaccct 1560 tgcagagcct aaagtgtgga aaccygccag cggcaaatac tggtgggaga tggcygaaga 1620 agaggatgat tttgtcgttg aggcaaaktc acctccccct gataaacctg ttgagaaygc 1680 tacagcaaaa gagcagactc cagctccgac tgtcgagaaa gctatggttg ctgatmagcc 1740 gactccagac cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac 1800 cccgctcaag caagacgaat ctacaaaaga gttgctcaac aacatcgtct cgcagttgat 1860 tcaaaagatc gacctgagct ccattgcaac gagggtggag gagaaactgc tgcgtcargc 1920 ccagaacaaa cagcagcaga acggagggaa gaagtcaccc agaaaacgca agacctcgaa 1980 cacttcttcc aagccgcata taaatgggaa gagtccacca gygacatccc agggttcagg 2040 aaatgcggya aactccccgc gctataccat cccccaaaac cgaagagcac acaatgggga 2100 gagcgcatca tctcagarca cccagaaatg gcgtccaaas tcgccggttt cgggtggccy 2160 tccttcggcg cccaagccga rgagacaagt ctgagactcc aagcggcacg ctggcttaaa 2220 cgagctgagt cagcggaraa gccgacagaa aaacaacgca agctcgtcat tgatcgtgtg 2280 gtyaaggcat atgaaccgtg tagaacyaat gccccacaca ccagctcctc tggcagccty 2340 atctggtccg acttcttgaa agatttcaag gaggctgtca actcactaga actcgaygca 2400 ggaataggtc tcccatacaa rcttcttcac aaagacacyc ahcgtcagat ggttgaagac 2460 cccaaattcc tgccgctcct gacgcgattg acctggaacc gtttacagaa gatgtcccag 2520 gttracttcc aggagatgac tcctgaacaa ctagtgagag aaggattgtg cgatccgatt 2580 cgtttgttcg tcaaaggaga accgcacaag caggcaaaac ttgatgaagg gcgctaccgc 2640 ctcatcatgt cagtctcgct ggtagatcaa ctggtagccc gggttttgtt tcaggcacaa 2700 aacaaaagag agatagcttt gtggagagct atcccttcaa agcccggttt cggcttatcc 2760 acagacaggg aagcacgcga attcatygaa tccctgtcca agacagtagg gtgttcccca 2820 gcagaagtca ttcatggctg gaggracaag atcgtaccca ccgactgttc cggttttgac 2880 tggtcagtcg ccgactggat gctcgaagac gacatggaag tgagaaatyt tctcacwatc 2940 aayaacaacg agctaacccg ccgcctcagg gcgtgctggt tgaagtgcat cacaaactct 3000 gtgatttgca crtccggcgg tgtcttgtac gcccaaactc atcctggrgt gcaraaatct 3060 ggatcttaca acacgagttc atccaattcc aggattcgag taatggcygc ttttcattgc 3120 ggcgcagatt gggcgatagc catgggagac gatgcacttg agtctccaaa ctccaacatc 3180 aacgcgtatc aaaagttggg gttyaaagtc gaggttgcct cacagctaga attttgctca 3240 cacgtctttg agcrggagga cctcgccagg ccgttgaayg taaacaaaat gctttatcgt 3300 ttgatctttg gatacaaycc ggcctgtggc aacgcggagg tattgtgcaa ttacctccaa 3360 gctgtggctt ctgttctcaa cgarcttcgc catgatccac agctagttgc yaccctccat 3420 gagtggctgg tccctggcgc cgccacaaaa taaatacgga ggggcatccc gagccaccay 3480 ataggttgca agagtggaac gggaagtcct atagayaagc cgcgcgattc tggattacaa 3540 acttctagcg ggrrttctca tyggtgttct catcgcaaty cccctagtga tcatagcggc 3600 ttacctgata ttcctcaaaa tcagtgcaca catccgagcg atagtgaatg aatacgggcg 3660 ctaaccgctc acgaaggaat gtcagaagac gcgctaaccg tcgtagacag actcggccag 3720 tggtcgtggt ccgggctccc ccaggaccta gacgagtacg acgacgtaga gcacgtgttg 3780 gaggaaacgc tgtgcgagga ccgggaggaa gaagcaaccg ggatgttctc actttcacgg 3840 ttgacgatct caaagccaac tcaaccggga tcctcaaatt cggaccgaac ytatctcagt 3900 acgcagcgtt caacaatggc ttactcaaag cctaccatga gtataaaatc acaagtctcm 3960 ctattcagta taactcatgc tcctccgacg caactccagg tgcaatcgca cttgaagtgg 4020 atacatcctg ctcccaaaca acaacaggct ccaagattac tagcttcccc gtcaagagga 4080 acgccaagaa agtcttcccg gcccccttca tcagggggaa agatttyatg actacgtcag 4140 ctgaccagtt ttggttgctg tacaaaggga atggagactc gagcctagca ggacaattcg 4200 tytgccgatt tgaatgcctt ttccagaatc ccaaataggt argcgacgct cccccaacac 4260 ccaccccaac accaacccca ccygctccga ccccggcacc ggctyctaag tatyttggat 4320 accaaggagt gccgarcaac atcgtgaaaa caagaggaaa ctctgaatat ctagatgtgg 4380 gtccgctcga aaatgtracc atgtatctyt ggmaagacga atcgtggagc atygagcaac 4440 tgtcagccgg atatcgcgtt aacaatcgag aacgtgccat accctttgtc ctctttccag 4500 tggataaagg yaaatactcy gtgttyatac aatgygaggg ctttaaggca gttaaagcca 4560 aaggaggcac gaacgayggc aagatgagcg ggtttctytg tgacaatgca aatctcgcgg 4620 gttggcgagc atacgcatay agtgggtgya caatctctaa ttataraaca tcrgactcya 4680 atgtycctgg ycatccrgac atgaaagtca atggtggatc tttyaccgac carttggtcg 4740 agagagattk ttcytgttca tttcacctyg aggtgcctca acaaggytat tttrgcytag 4800 aggccccacc cattgaaaag agtgatcatt tcaattttgt ggtgtcttac gctaayttca 4860 ctgataaaat cctggaatgg ggttcaatct cygtagcgat wgacgaggtg aatgacggag 4920 cgtatagyag atcaaaatgg gataagactr ctgcaatgag tgctcgtttg ccgactcagg 4980 tgagcgccss ctctgaggtt tacaccccgg aagcacctga acaaccgact aacgaaggga 5040 cggagagtat gcctccagcc ccgaacccgg cactgggacc ggacaaccca gcaaccaaag 5100 aacccacgcc caaaatcgtg gataatccgg acccaaaggt rctcaactgg ctyaacaacc 5160 agcgagataa acctgtggtg gaagaggttt tgcgtgaatc tccgatttat gctcctccac 5220 cccccccgtc tctarycccg actymtgccg acactttrag acaggcggat aaggtccgga 5280 gagctctcat ggctaacgct tcrcgtkcag cctcacctcc ccccacgamy rccgaagttc 5340 ctrttcttgg rgccrctgac accgcttctc wtagtggatc attacgcggt ggctccctca 5400 grggtaattt gggttctcgc ccctcycttc cgagggtcgc tgacagccct ccccgttctg 5460 taagtccggy ycgttcygag accagcacty tacarggcgg ttcyctgagy ggtggttctt 5520 tgakrggtgg taacctycrg gctttgcctg aggccacaar agagcaaagg agggaatatg 5580 aacgtctcaa gaattcacaa ggrarkacgg trgcaaaagc ccatgctaaa gaacacggtt 5640 acaarccacc gaaatcttcc tcctccttrt ttggttgagt gtcgagccac tataacgctc 5700 cccgccccgg gacacgggac tccaatcatg agtttaaact gagctctttc caygagccta 5760 aactggagaa ctccgcaaag ttctaaaact rtgcagatgg gctagcgacc cagctcttcc 5820 attgattttc aggatctttg gaagcccaag ctaaaggggt ggaatacagg gaggyactgc 5880 ctcccgttty ytagt 5895 //