ID AJ245653; SV 1; circular; genomic DNA; STD; VRL; 2728 BP. XX AC AJ245653; XX DT 07-JAN-2000 (Rel. 62, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Watermelon chlorotic stunt virus-[IR] segment B, complete sequence, clone DE WmCSV-IR-B XX KW BC1 gene; BV1 gene. XX OS Watermelon chlorotic stunt virus-[IR] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2728 RA Kheyr-Pour A.; RT ; RL Submitted (04-AUG-1999) to the INSDC. RL Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la RL Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198, RL France. XX RN [2] RX PUBMED; 18944543. RA Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E., RA Ahoonmanesh A., Lecoq H., Gronenborn B.; RT "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence RT Comparisons and Identification of a Whitefly-Transmission Determinant"; RL Phytopathology 90(6):629-635(2000). XX DR MD5; 9b7f4db8fa72f4b96474c91e47ef0daf. XX FH Key Location/Qualifiers FH FT source 1..2728 FT /organism="Watermelon chlorotic stunt virus-[IR]" FT /segment="B" FT /host="Citrullus vulgaris" FT /mol_type="genomic DNA" FT /clone="WmCSV-IR-B" FT /db_xref="taxon:223362" FT rep_origin 1 FT /direction=RIGHT FT /note="firet base of viral (+) strand" FT stem_loop join(2710..2728,1..13) FT /standard_name="conserved hairpin" FT /function="circularization of ss-DNA duringreplication" FT misc_feature join(2722..2728,1..2) FT /standard_name="conserved nonanucleotide 'TAATATTAC'" FT /function="part of Rep origin recognition site" FT CDS 500..1255 FT /gene="BV1" FT /product="BV1 protein" FT /db_xref="GOA:Q9Q1R3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R3" FT /protein_id="CAB65508.1" FT /translation="MRRYDGTPQVTRGRKRKQFSRPFKSGLFRRRQASRRLFAEKLHEK FT LSRRCLEDVHSGPSYALMNQCDVTSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVT FT PLPAEPMSDRSPMNGIFVILLIVDKKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQ FT RHRYRILGMWKQYVSGDDSAVQKDFTLRRNISGPRYNVWAAFKDIDQMSTGGNYKNVSK FT NAILACNVWVSTVRSKCEVYSQFVLDYVG" FT regulatory 1255..1262 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1268..1274) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1295..2215) FT /gene="BC1" FT /product="BC1 protein" FT /db_xref="GOA:Q9Q1R2" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R2" FT /protein_id="CAB65509.1" FT /translation="MEGAYTVTNKYINTKRTEYTLTTDATPITLQFPSSMEQTRVRLLG FT RCMKIDHIIIEYRNQVPFNATGSVIIEIRDNRISDEEAAQAAFTFPIACNVDLHYFSSS FT FFSVAEQCPWEIVYRVEGSNVLDGVRFASFKAKLRLSSARHSTDIMFKAPTIKILTKDY FT KEDCIDFWSVERGETRRRLLNPTPSAQSNRALSKRPITILPGETWATKSHVGLPSASDS FT QSRDTYRSQSMRLDHTRSFTGTSYESDDTPYAGLQRLQTATLDPGDSVFQTTSGNFSRQ FT DLESILENTINKCLIKNKSDNNQML" FT regulatory complement(2329..2335) FT /note="of complementary sense transcription" FT /regulatory_class="TATA_box" XX SQ Sequence 2728 BP; 698 A; 586 C; 686 G; 758 T; 0 other; accggatggc cgccggatcc catttgtgcg gaccccaccg agtctccaaa tggcattttg 60 gtaattttcg tgaaattaaa aagagggacc accgcactat cactctcttg gccaatcaaa 120 gtgcgtcctt attcttaagg ggataaattt gggcctgggc ccaagttatc gatgtgacag 180 gacgacgtct gctttaatag attggcccac aacgactgct ttgtctgaca ggaccacatg 240 ggacactgac aggtctgttc tttaatctta agaaaattca gggaattttc ccgcctaatt 300 cgtctcgagg agcaaacagt cgttcgatgg ccgccacctg tccctggttc ggtcgtttga 360 ttttcgtttt tcggttaatt tgtggtctct gtacatatgg gctttgtatt tatgacagtg 420 tggcgtccat actgaggtgt ccaactggga ctgtattcgt attgagagga tatacgtatc 480 ctcccaagct ataccagtga tgcgtcgcta tgatggaaca cctcaggtta ctcgtggacg 540 aaagcggaag cagttctctc gcccgttcaa gtctggtctg tttagacgcc gtcaggcgtc 600 gaggcgtctt tttgccgaaa agctacacga gaaactctca cgccgttgcc tggaggatgt 660 tcacagtggg ccgtcttatg cacttatgaa tcagtgcgac gtgacatcgt atgtgacgta 720 tcctattctt ggtctagagg gcaacggggg acgtagcagg gactttatta agctgatgaa 780 cgtgcgcgtt tctggcacga tcaacgtgac ccctttgcct gcagagccca tgtccgatcg 840 ttctcctatg aacggtatat ttgttatact tttgatcgtg gacaagaaac cattcgtacc 900 cgaaggtgtg aacgtattgc ccagtttcaa ggaactgttc ggggagtatg aatgcgtcta 960 cggcattcca cgagtgaagg aaaatcagcg tcataggtat aggattctgg gcatgtggaa 1020 gcaatacgtt agcggtgacg atagtgcggt gcagaaggac tttactttgc gaaggaacat 1080 tagtggtccc agatacaacg tatgggcagc attcaaagac attgatcaaa tgtccacagg 1140 aggaaattac aagaacgtga gcaagaatgc cattcttgcc tgtaatgtat gggtctctac 1200 agttcgttcg aaatgtgaag tgtattcgca atttgtactg gattatgtgg gctgaaataa 1260 aattcaattt tatttatgcg ttcaaacatt gttattacag catttgatta ttgtcggatt 1320 tgttcttaat taggcactta ttaatcgtat tttctaaaat agattctagg tcctgcctcg 1380 agaaatttcc tgatgttgtc tggaagactg agtctcccgg gtctagcgtg gctgtttgta 1440 gtctttgcag ccctgcatat ggcgtgtcgt cggactcata tgaggtcccc gtgaaactgc 1500 gtgtgtggtc cagtctcatc gattgggatc tgtatgtgtc gcgactttga gagtccgacg 1560 cagaaggcaa cccaacatgc gactttgtgg cccaagtctc tccaggtaaa atcgtaattg 1620 gcctctttga cagggcccga ttcgattggg ccgacggggt tgggttgagc agtcttcgtc 1680 gtgtttcgcc tcgttcaacg gaccagaagt ctatgcagtc ctccttgtaa tcctttgtca 1740 ggatcttgat cgtcggagcc ttgaacatga tgtccgttga atgtcgtgca gaactcagtc 1800 gcaacttggc tttgaaagaa gcaaaccgga ccccgtccaa gacgttcgag ccctcgaccc 1860 tgtacacgat ctcccaggga cactgctcgg cgactgagaa aaacgacgaa gagaagtagt 1920 gaagatcgac gttgcaagct atcgggaagg tgaatgcagc ctgtgctgct tcctcgtcgg 1980 agatacggtt atcccgtatc tcaataatca ctgatcccgt tgcgttaaac gggacctggt 2040 ttctgtactc aatgataatg tggtcgatct tcatgcatct tcccaacaga cgcacccttg 2100 tctgctccat cgaactggga aactgaagtg ttataggagt ggcgtctgta gtgagcgtat 2160 attccgtcct cttggtattt atgtacttgt tagtgacggt atacgctccc tccattccgt 2220 tctccacagg acctttcgac gatgttcaga tcggaggtgc agatagctct gtacacaata 2280 aatttacaat aacacaggca aagcaacaag agaacggaga taaatctatt atataaaata 2340 aggccccgca ggggaaatac tcaaaacaca gcgagaaagg aaataatggg catactatgc 2400 cctaaaggat agttaagcga aattaatgga gctggtaatc gtattgggtg ttttggagta 2460 ttttataata tctaatttgc tcgggcgtat taggaactgg tgttcgtcgg ggagagaaat 2520 cgacctgaat tcctaaatag aaataaccct aatgaccgaa caaatagaat ggggagataa 2580 aataaggaga gagaagctct ttcatgtacg gaactggaga cacctcccag tccttctatc 2640 cctgtgaatt ggagactgga gacaatatat agaagtagta tgatatatta ctaggatttt 2700 gacacgtagg cggccatcct ataatatt 2728 //