ID   AJ245651; SV 1; circular; genomic DNA; STD; VRL; 2760 BP.
XX
AC   AJ245651;
XX
DT   07-JAN-2000 (Rel. 62, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Watermelon chlorotic stunt virus-[SD] segment B, complete sequence, clone
DE   WmCSV-SD-B
XX
KW   BC1 gene; BV1 gene; BV2 gene.
XX
OS   Watermelon chlorotic stunt virus-[SD]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2760
RA   Kheyr-Pour A.;
RT   ;
RL   Submitted (04-AUG-1999) to the INSDC.
RL   Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la
RL   Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198,
RL   France.
XX
RN   [2]
RX   PUBMED; 18944543.
RA   Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E.,
RA   Ahoonmanesh A., Lecoq H., Gronenborn B.;
RT   "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence
RT   Comparisons and Identification of a Whitefly-Transmission Determinant";
RL   Phytopathology 90(6):629-635(2000).
XX
DR   MD5; b39af8fab7a56d870f7fb1478cf0d475.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2760
FT                   /organism="Watermelon chlorotic stunt virus-[SD]"
FT                   /segment="B"
FT                   /host="Citrullus vulgaris"
FT                   /mol_type="genomic DNA"
FT                   /clone="WmCSV-SD-B"
FT                   /db_xref="taxon:223363"
FT   rep_origin      1
FT                   /direction=RIGHT
FT                   /note="first base of viral (+) strand"
FT   stem_loop       join(2741..2760,1..14)
FT                   /standard_name="conserved hairpin"
FT                   /function="circularization of ss-DNA during replication"
FT   misc_feature    join(2754..2760,1..2)
FT                   /standard_name="conserved nonanucleotide 'TAATATTAC'"
FT                   /function="part of Rep recognition site"
FT   CDS             220..531
FT                   /gene="BV2"
FT                   /product="BV2 protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q9Q1S1"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAB65498.1"
FT                   /translation="MLYEIGPQRLLCLTGPHGTLTGLFFNLKKIHGIFPPISPRGSNSR
FT                   WMAATCPWFVHSIFVFRLICGLCTYGPGIYDSVAPILRCPIGTVFLFRGYTYPPKLYQ"
FT   CDS             531..1286
FT                   /gene="BV1"
FT                   /product="BV1 protein"
FT                   /db_xref="GOA:Q9Q1S0"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR001530"
FT                   /db_xref="UniProtKB/TrEMBL:Q9Q1S0"
FT                   /protein_id="CAB65499.1"
FT                   /translation="MRRYDGTPQGTRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREK
FT                   LSRRCLEDVHSGPSYALMNQCDVTSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVT
FT                   PLAAEPMSDRSPMNGIFVLLLIVDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQ
FT                   RHRYRILGMWKQYVSGDDSAVQKDFTLRRNLSGPRYNVWAAFKDMDQMSTGGNYKNVSK
FT                   NAILACNVWVSTFRSKCEVYSQFVLDYVG"
FT   regulatory      1287..1293
FT                   /note="of virion sense transcription"
FT                   /regulatory_class="polyA_signal_sequence"
FT   regulatory      complement(1299..1305)
FT                   /note="of complementary sense transcription"
FT                   /regulatory_class="polyA_signal_sequence"
FT   CDS             complement(1326..2246)
FT                   /gene="BC1"
FT                   /product="BC1 protein"
FT                   /db_xref="GOA:Q9Q1R9"
FT                   /db_xref="InterPro:IPR000211"
FT                   /db_xref="UniProtKB/TrEMBL:Q9Q1R9"
FT                   /protein_id="CAB65500.1"
FT                   /translation="MEGAYTVTNKYIHTKRTEYTLTTDATPITLQFPSSIEQTRVRLLG
FT                   RCMKIDHIIIEYRNQVPFNATGSVIIEIRDNRISDEEAAQAAFTFPIACNVDLHYFSSS
FT                   FFSVAEQCPWEIVYRVEDSNVLNGVRFASFKAKLRLSSARHSTDIMFKAPTIKILTKGY
FT                   KEDCIDFWSVERGETRRRLLNPTPSAQSNRALSKRPITILPGETWATKSHVGLPSASDS
FT                   QSRETYRSQSMRLHHTRSFTGTSYESDDTPYAGLHRLQTATLDPGDSVSQTRSENFTRQ
FT                   DLESILENTINKCLIKNKSDINQIL"
FT   regulatory      complement(2360..2366)
FT                   /note="of complementary strand transcription"
FT                   /regulatory_class="TATA_box"
XX
SQ   Sequence 2760 BP; 698 A; 598 C; 690 G; 774 T; 0 other;
     accggatggc cgccggatcc catttgtgcg gaccccaccg agtctccaaa tggcattttg        60
     gtaatttccg tgtcttcaga tggctttctt gtaatttatg tgaaattaaa aagagggacc       120
     accgcactat caccttcttg gccaatcaaa gtgcgccttg attcttaagg ggataaaatt       180
     gggcctgggc ccaatttatt gatgtgacgg gacgtacgta tgctttacga gattggccca       240
     caacgactgc tttgtctgac aggaccacat ggaacactga caggtctgtt ctttaacctt       300
     aagaaaattc atggaatttt cccgcctatt tcgcctcgag gatcaaacag tcgttggatg       360
     gccgccacct gtccctggtt cgttcattcg attttcgttt ttcggttaat ttgtggtctc       420
     tgtacatatg ggcctggtat ttatgacagt gtggcgccca tactgaggtg tccaattggg       480
     actgtattcc tatttagagg atatacgtat cctcccaagc tataccagta atgcgtcgct       540
     atgatgggac acctcagggt actcgtggac gaaagcggaa gcaattctct cgcccgttta       600
     agtctggtct gtttagacgc cgtcaggcgt cgaggcgttt gtttgccgaa aagcaacgcg       660
     agaaactctc gcgccgttgc ctggaggatg ttcacagtgg gccgtcttat gcactgatga       720
     atcagtgcga cgtgacttcg tatgtgacgt atcctattct tggtctagag ggcaacgggg       780
     gacgtagccg tgactttatt aagctgatga acgtgcgcgt ttctggcacg atcaacgtga       840
     cccctttggc tgcagagccc atgtccgatc gttctcctat gaacggtata tttgttctac       900
     tattgatcgt ggacaggaaa ccattcgtac ccgaaggtgt gaacgtattg cccagtttca       960
     aggaactgtt cggggagtat gaatgcgtct acggcattcc acgagtgaag gaaaatcagc      1020
     gtcataggta tagaattctg ggcatgtgga agcaatacgt cagcggtgac gatagtgcgg      1080
     tgcagaagga ctttactttg cgaaggaacc tcagtggtcc gagatacaac gtatgggcag      1140
     cattcaaaga catggatcaa atgtccacag gaggaaatta caagaacgtg agcaagaatg      1200
     ccatccttgc ctgcaatgtt tgggtctcta catttcgttc gaaatgtgaa gtgtattcgc      1260
     aatttgttct ggattatgtt ggctgaaata aaattcgatt ttatttatgc gttcaacaat      1320
     cgttattaca gtatttgatt gatatcggat ttgttcttaa ttaggcactt attaatcgta      1380
     ttttctaaaa tagattctag gtcctgcctc gtgaaattct ctgatcttgt ctgggagact      1440
     gagtctcccg ggtctagcgt tgctgtttgt agtctgtgta gccctgcata tggcgtgtcg      1500
     tcggactcat atgaggtccc cgtgaaactg cgtgtgtggt gcagtctcat cgactgggat      1560
     ctgtatgttt cgcgactttg agagtccgac gcagaaggca acccaacatg cgactttgtg      1620
     gcccaagtct ctccaggtaa aatcgtaatt ggcctctttg acagtgcccg attcgattgg      1680
     gccgacgggg ttgggttgag cagccttcgt cgtgtttcgc ctcgttcaac ggaccagaag      1740
     tctatgcagt cctccttgta accctttgtc aggatcttga tcgtcggagc cttgaacatg      1800
     atgtccgttg aatgtcgtgc agaactcagt cgcaacttgg ctttgaagga agcaaaccgg      1860
     acaccgttca agacgttcga gtcctcaacc ctgtacacga tctcccatgg acactgctcg      1920
     gcgactgaga aaaacgacga agagaagtag tgaagatcga cgttgcaagc tatcgggaag      1980
     gtgaaggcag cctgtgctgc ttcctcgtcg gagatacggt tgtcccgtat ctcaataatc      2040
     acagatcccg ttgcgttaaa cgggacctgg tttctgtact caattataat gtggtcgatc      2100
     ttcatgcatc ttcccaacag acgcaccctt gtctgctcga tcgaactggg aaactgaagg      2160
     gttataggag tggcgtctgt agtgagcgta tattcagtcc tcttggtatg tatgtacttg      2220
     ttagtgacgg tatacgctcc ttccattccg ttctccacag gacctttcga cgatgttcaa      2280
     ttctgaggtg cagatagctc tgcacacaat aaattaacaa taacacaggc aaagcaacaa      2340
     gagaacggag aatattctat tatataaaat aaggccccgc aggggaaata ctcaaaacac      2400
     agtgagaaag gaaataatgg gcatactatg ccctaaagga taatttaagc gaaattaatt      2460
     gagctggtaa tcgtattggg tgttttggag tatttcataa tctctagttt cttcgggcgt      2520
     attaggaact ggtgttcgtc gtggagagaa ctcgaccaga attcttaaat agaaataacc      2580
     ctaatgaccg aacaaataga atggggagat aaaataagga gagagaagct ccttcatgta      2640
     cggaactgga gacacctccc agcccttcta tccctgtgaa ttggagactg gagacaatat      2700
     atagaagtag tatgttatac aactatgatt ttgacacgta ggcggccatc ctataatatt      2760
//