Dbfetch
ID AJ245651; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC AJ245651; XX DT 07-JAN-2000 (Rel. 62, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Watermelon chlorotic stunt virus-[SD] segment B, complete sequence, clone DE WmCSV-SD-B XX KW BC1 gene; BV1 gene; BV2 gene. XX OS Watermelon chlorotic stunt virus-[SD] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Kheyr-Pour A.; RT ; RL Submitted (04-AUG-1999) to the INSDC. RL Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la RL Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198, RL France. XX RN [2] RX PUBMED; 18944543. RA Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E., RA Ahoonmanesh A., Lecoq H., Gronenborn B.; RT "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence RT Comparisons and Identification of a Whitefly-Transmission Determinant"; RL Phytopathology 90(6):629-635(2000). XX DR MD5; b39af8fab7a56d870f7fb1478cf0d475. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Watermelon chlorotic stunt virus-[SD]" FT /segment="B" FT /host="Citrullus vulgaris" FT /mol_type="genomic DNA" FT /clone="WmCSV-SD-B" FT /db_xref="taxon:223363" FT rep_origin 1 FT /direction=RIGHT FT /note="first base of viral (+) strand" FT stem_loop join(2741..2760,1..14) FT /standard_name="conserved hairpin" FT /function="circularization of ss-DNA during replication" FT misc_feature join(2754..2760,1..2) FT /standard_name="conserved nonanucleotide 'TAATATTAC'" FT /function="part of Rep recognition site" FT CDS 220..531 FT /gene="BV2" FT /product="BV2 protein" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S1" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAB65498.1" FT /translation="MLYEIGPQRLLCLTGPHGTLTGLFFNLKKIHGIFPPISPRGSNSR FT WMAATCPWFVHSIFVFRLICGLCTYGPGIYDSVAPILRCPIGTVFLFRGYTYPPKLYQ" FT CDS 531..1286 FT /gene="BV1" FT /product="BV1 protein" FT /db_xref="GOA:Q9Q1S0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S0" FT /protein_id="CAB65499.1" FT /translation="MRRYDGTPQGTRGRKRKQFSRPFKSGLFRRRQASRRLFAEKQREK FT LSRRCLEDVHSGPSYALMNQCDVTSYVTYPILGLEGNGGRSRDFIKLMNVRVSGTINVT FT PLAAEPMSDRSPMNGIFVLLLIVDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVKENQ FT RHRYRILGMWKQYVSGDDSAVQKDFTLRRNLSGPRYNVWAAFKDMDQMSTGGNYKNVSK FT NAILACNVWVSTFRSKCEVYSQFVLDYVG" FT regulatory 1287..1293 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1299..1305) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1326..2246) FT /gene="BC1" FT /product="BC1 protein" FT /db_xref="GOA:Q9Q1R9" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:Q9Q1R9" FT /protein_id="CAB65500.1" FT /translation="MEGAYTVTNKYIHTKRTEYTLTTDATPITLQFPSSIEQTRVRLLG FT RCMKIDHIIIEYRNQVPFNATGSVIIEIRDNRISDEEAAQAAFTFPIACNVDLHYFSSS FT FFSVAEQCPWEIVYRVEDSNVLNGVRFASFKAKLRLSSARHSTDIMFKAPTIKILTKGY FT KEDCIDFWSVERGETRRRLLNPTPSAQSNRALSKRPITILPGETWATKSHVGLPSASDS FT QSRETYRSQSMRLHHTRSFTGTSYESDDTPYAGLHRLQTATLDPGDSVSQTRSENFTRQ FT DLESILENTINKCLIKNKSDINQIL" FT regulatory complement(2360..2366) FT /note="of complementary strand transcription" FT /regulatory_class="TATA_box" XX SQ Sequence 2760 BP; 698 A; 598 C; 690 G; 774 T; 0 other; accggatggc cgccggatcc catttgtgcg gaccccaccg agtctccaaa tggcattttg 60 gtaatttccg tgtcttcaga tggctttctt gtaatttatg tgaaattaaa aagagggacc 120 accgcactat caccttcttg gccaatcaaa gtgcgccttg attcttaagg ggataaaatt 180 gggcctgggc ccaatttatt gatgtgacgg gacgtacgta tgctttacga gattggccca 240 caacgactgc tttgtctgac aggaccacat ggaacactga caggtctgtt ctttaacctt 300 aagaaaattc atggaatttt cccgcctatt tcgcctcgag gatcaaacag tcgttggatg 360 gccgccacct gtccctggtt cgttcattcg attttcgttt ttcggttaat ttgtggtctc 420 tgtacatatg ggcctggtat ttatgacagt gtggcgccca tactgaggtg tccaattggg 480 actgtattcc tatttagagg atatacgtat cctcccaagc tataccagta atgcgtcgct 540 atgatgggac acctcagggt actcgtggac gaaagcggaa gcaattctct cgcccgttta 600 agtctggtct gtttagacgc cgtcaggcgt cgaggcgttt gtttgccgaa aagcaacgcg 660 agaaactctc gcgccgttgc ctggaggatg ttcacagtgg gccgtcttat gcactgatga 720 atcagtgcga cgtgacttcg tatgtgacgt atcctattct tggtctagag ggcaacgggg 780 gacgtagccg tgactttatt aagctgatga acgtgcgcgt ttctggcacg atcaacgtga 840 cccctttggc tgcagagccc atgtccgatc gttctcctat gaacggtata tttgttctac 900 tattgatcgt ggacaggaaa ccattcgtac ccgaaggtgt gaacgtattg cccagtttca 960 aggaactgtt cggggagtat gaatgcgtct acggcattcc acgagtgaag gaaaatcagc 1020 gtcataggta tagaattctg ggcatgtgga agcaatacgt cagcggtgac gatagtgcgg 1080 tgcagaagga ctttactttg cgaaggaacc tcagtggtcc gagatacaac gtatgggcag 1140 cattcaaaga catggatcaa atgtccacag gaggaaatta caagaacgtg agcaagaatg 1200 ccatccttgc ctgcaatgtt tgggtctcta catttcgttc gaaatgtgaa gtgtattcgc 1260 aatttgttct ggattatgtt ggctgaaata aaattcgatt ttatttatgc gttcaacaat 1320 cgttattaca gtatttgatt gatatcggat ttgttcttaa ttaggcactt attaatcgta 1380 ttttctaaaa tagattctag gtcctgcctc gtgaaattct ctgatcttgt ctgggagact 1440 gagtctcccg ggtctagcgt tgctgtttgt agtctgtgta gccctgcata tggcgtgtcg 1500 tcggactcat atgaggtccc cgtgaaactg cgtgtgtggt gcagtctcat cgactgggat 1560 ctgtatgttt cgcgactttg agagtccgac gcagaaggca acccaacatg cgactttgtg 1620 gcccaagtct ctccaggtaa aatcgtaatt ggcctctttg acagtgcccg attcgattgg 1680 gccgacgggg ttgggttgag cagccttcgt cgtgtttcgc ctcgttcaac ggaccagaag 1740 tctatgcagt cctccttgta accctttgtc aggatcttga tcgtcggagc cttgaacatg 1800 atgtccgttg aatgtcgtgc agaactcagt cgcaacttgg ctttgaagga agcaaaccgg 1860 acaccgttca agacgttcga gtcctcaacc ctgtacacga tctcccatgg acactgctcg 1920 gcgactgaga aaaacgacga agagaagtag tgaagatcga cgttgcaagc tatcgggaag 1980 gtgaaggcag cctgtgctgc ttcctcgtcg gagatacggt tgtcccgtat ctcaataatc 2040 acagatcccg ttgcgttaaa cgggacctgg tttctgtact caattataat gtggtcgatc 2100 ttcatgcatc ttcccaacag acgcaccctt gtctgctcga tcgaactggg aaactgaagg 2160 gttataggag tggcgtctgt agtgagcgta tattcagtcc tcttggtatg tatgtacttg 2220 ttagtgacgg tatacgctcc ttccattccg ttctccacag gacctttcga cgatgttcaa 2280 ttctgaggtg cagatagctc tgcacacaat aaattaacaa taacacaggc aaagcaacaa 2340 gagaacggag aatattctat tatataaaat aaggccccgc aggggaaata ctcaaaacac 2400 agtgagaaag gaaataatgg gcatactatg ccctaaagga taatttaagc gaaattaatt 2460 gagctggtaa tcgtattggg tgttttggag tatttcataa tctctagttt cttcgggcgt 2520 attaggaact ggtgttcgtc gtggagagaa ctcgaccaga attcttaaat agaaataacc 2580 ctaatgaccg aacaaataga atggggagat aaaataagga gagagaagct ccttcatgta 2640 cggaactgga gacacctccc agcccttcta tccctgtgaa ttggagactg gagacaatat 2700 atagaagtag tatgttatac aactatgatt ttgacacgta ggcggccatc ctataatatt 2760 //