ID AJ245650; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC AJ245650; XX DT 07-JAN-2000 (Rel. 62, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) XX DE Watermelon chlorotic stunt virus-[SD] segment A, complete sequence, clone DE WmCSV-SD-A XX KW AC2 gene; AC3 gene; AC4 gene; AV2 gene; capsid gene; capsid protein; KW rep gene. XX OS Watermelon chlorotic stunt virus-[SD] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RA Kheyr-Pour A.; RT ; RL Submitted (04-AUG-1999) to the INSDC. RL Kheyr-Pour A., Institut des Sciences Vegetales, Centre National de la RL Recherche Scientifique, Avenue de la Terrasse, Gif sur Yvette 91198, RL France. XX RN [2] RX PUBMED; 18944543. RA Kheyr-Pour A., Bananej K., Dafalla G.A., Caciagli P., Noris E., RA Ahoonmanesh A., Lecoq H., Gronenborn B.; RT "Watermelon chlorotic stunt virus from the Sudan and Iran: Sequence RT Comparisons and Identification of a Whitefly-Transmission Determinant"; RL Phytopathology 90(6):629-635(2000). XX DR MD5; 1cc593ed7668627b92acf1171b92b76e. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Watermelon chlorotic stunt virus-[SD]" FT /segment="A" FT /host="Citrullus vulgaris" FT /mol_type="genomic DNA" FT /clone="WmCSV-SD-A" FT /db_xref="taxon:223363" FT rep_origin 1 FT /direction=RIGHT FT /note="first base of viral (+) strand" FT stem_loop join(2735..2753,1..13) FT /standard_name="conserved hairpin" FT /function="circularization of ss-DNA during replication" FT misc_feature join(2747..2753,1..2) FT /standard_name="conserved nonanucleotide 'TAATATTAC'" FT /function="part of Rep origin recognition site" FT regulatory 120..127 FT /note="of virion sense transcription" FT /regulatory_class="TATA_box" FT CDS 156..515 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q9Q1S5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S5" FT /protein_id="CAB65492.1" FT /translation="MWDPLLHDFPESVHGFRCMLAVKYLQAVESTYEPNTLGHELIRDL FT ILVLRARDYGEANRRYSHFHSRFEGSSKTELRQPLHEPCSCPHCPRHKQASTMGQQAHV FT SKAQDVQDVSKPRRP" FT misc_feature 220..987 FT /note="non functional AC5 gene" FT /experiment="experimental evidence, no additional details FT recorded" FT CDS 316..1092 FT /gene="capsid" FT /product="capsid protein" FT /db_xref="GOA:Q77A36" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q77A36" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAB65493.1" FT /translation="MAKRTGDILISTPVSKVRRKLNFDSPYMSRALAPTVLVTSKRRQW FT ANRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFYRVYNHVVYNHQETAKYE FT NHTENAMLLYMACTHASNPVYATLKIRIYFYDSVTN" FT variation 706 FT /phenotype="whitefly non-transmissible virus" FT /note="causes N131D change in the capsid protein" FT CDS complement(1089..1493) FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q9Q1S4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S4" FT /protein_id="CAB65494.1" FT /translation="MDSRTGEYITADQAWNGVFTWKINNPLYFTITDHNQRPFLCQHDI FT INMQIRFNHNLRRALGIHKAFLNFRIWTTLRPQTGRFLRVFRTQVLKYLDMLGVISLNL FT VVRAVSHVLENVLVGTIDVQENHVIKFDIY" FT regulatory 1090..1096 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1104..1110) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1234..1641) FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q9Q1S3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S3" FT /protein_id="CAB65495.1" FT /translation="MPNSSSSQNLSSQPSIKIRHRLAKKKTIRRRRVDLKCGCSYYLHI FT SCQNHGFSHRGIHYCGSSMEWRVYLEDKQPPIFHDNRPQPTPLSLPTRHNKHANTIQPQ FT PSEGVGDSQSFPELPNLDDFTASDWSFLKGI" FT CDS complement(1541..2626) FT /gene="Rep" FT /product="Rep protein" FT /db_xref="GOA:Q9Q1S2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9Q1S2" FT /protein_id="CAB65496.1" FT /translation="MRPPRFRIQAKNIFLTYPRCSLSKEELLSFLVGLSLPSNLKYVKV FT CRELHQNGEPHLHVLLQFAGKITITDNRLFDHVHPSRSACFHPNIQSAKSSTDVKSYLD FT KDGDTVEWGKFQIDGRSARGGQQTANDAYATALNMSNKGEAMSVIKELAPKDFVLHYHN FT IKSNLDRIFEEPVAPFVCPFPMSSFTMLPPELVDWASTNVCSSAARPWRPKSIVVEGES FT RTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPIQIKGGIPTIFLCNPGPSSSYKEFLEEEKNYALKEWADKNAEFVFLTEPLF FT STEHQDQTQTRQKEDDSATTR" FT CDS complement(2329..2472) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:Q77A35" FT /protein_id="CAB65497.1" FT /translation="MGNLISMCSCSSPERSPSQTIASSIMYTQAVAPVSTPTYKALSPV FT QT" FT regulatory 2692..2697 FT /gene="Rep" FT /regulatory_class="TATA_box" XX SQ Sequence 2753 BP; 702 A; 617 C; 681 G; 753 T; 0 other; accggatgcc cgcggagaaa aaaaggtgac cccacaggac acgtgcacca atgaaattgc 60 gtgctttgag gtaagttagc tggaaatggg gttttgaaag cgacaagtca tacgagttgt 120 atttatagtg ctgctgcgga tcaacttttg tcagtatgtg ggatcctttg cttcatgact 180 ttcccgagtc ggttcacggc tttcggtgta tgctagctgt caagtacttg caggccgttg 240 aatcgaccta cgagcccaat actttgggcc acgaattgat ccgcgatctg attcttgttc 300 tccgggcccg tgattatggc gaagcgaaca ggagatattc tcatttccac tcccgtttcg 360 aaggttcgtc gaaaactgaa cttcgacagc ccctacatga gccgtgctct tgcccccact 420 gtcctcgtca caagcaagcg tcgacaatgg gccaacaggc ccatgtatcg aaagcccagg 480 atgtacagga tgtatcgaag cccagacgtc cctaagggct gcgaaggccc atgcaaagtt 540 cagtcgtacg aacaacgaga cgacgttaag cacaccggta tcgtccggtg tgtcagtgat 600 gttactaggg ggagtggaat cactcatcgt gtcggaaaaa ggttttgtgt taagtctata 660 tacattcttg gcaagatctg gatggatgag aacataaaaa aacaaaatca tacgaatcag 720 gtcatgttct ttcttgttcg tgatcgtcgt ccatatgggt ccagtccaat ggacttcgga 780 caggttttta atatgttcga caacgagccc agcactgcga cagttaagaa cgatcttcgc 840 gatcgtttcc aagttatgcg aaagtttcat gccaccgtgg ttggtggccc ctctgggatg 900 aaggagcagg cgctggtaaa acgcttctat cgtgtgtaca atcatgtggt ctacaaccac 960 caagagactg cgaagtatga gaatcatact gagaatgcta tgttattgta tatggcgtgt 1020 acacacgcat cgaatcctgt gtatgcaaca ttgaaaattc gtatatactt ttatgactca 1080 gttacgaatt aataaatatc gaattttatt acgtgatttt cttgtacatc gattgtccca 1140 acaaggacat tttccaatac atgacttacg gccctaacaa ccaaatttag actaattaca 1200 cctaacatat cgaggtattt tagaacctgc gttctaaata cccttaagaa acgaccagtc 1260 tgaggccgta aagtcgtcca gattcggaag ttcaggaaag ctttgtgaat ccccaacgcc 1320 ctccgaaggt tgtggttgaa tcgtatttgc atgtttatta tgtcgtgttg gcaaagaaag 1380 gggcgttggt tgtggtctgt tatcgtgaaa tatagggggt tgtttatctt ccaggtaaac 1440 acgccattcc atgcttgatc cgcagtaatg tattccccgg tgcgagaatc catgattctg 1500 gcaggagata tgcaggtaat atgagcaacc gcactttaga tcaacgcgtc gtcgccgaat 1560 cgtcttcttt ttggcgagtc tgtgtctgat cttgatgctc ggttgagaag agaggttctg 1620 tgaggaagac gaattcggca ttcttatccg cccactcttt tagtgcatag ttcttctctt 1680 cctctagaaa ctctttatac gaagaagatg ggcccggatt gcaaaggaag atagtgggaa 1740 ttccaccttt aatttgaatc ggctttccgt atttcgtgtt gctttgccaa tcacgctggg 1800 cccccatgaa ctctttgaag tgctttagat aatgcgggtc gacgtcatca atgacgttgt 1860 accacgcatc gttgctgtat atctttggac tcaggtcaag gtgaccacat aggtaattat 1920 gtggtcctaa tgaccgggcc cacattgtct ttcccgtacg actctcaccc tctaccacga 1980 tactcttagg tctccacggc cgcgcagcgg aagagcaaac gttcgttgat gcccaatcaa 2040 cgagctcagg cggtagcatc gtgaaagacg acatcggaaa aggacaaacg aaaggagcca 2100 caggttcttc gaagattcga tccaaatttg acttgatatt gtggtagtga aggacgaagt 2160 ccttcggtgc gagctccttg atcacagaca tagcctcacc tttattactc atgttaagcg 2220 ccgtagcata ggcgtcgtta gctgtctgtt gtccacccct tgcagatcta ccgtcgattt 2280 gaaacttgcc ccactcgacg gtgtcgccgt ccttgtccag gtaagacttc acgtctgtac 2340 tggacttagc gctttgtatg ttggggtgga aacaggcgct acggcttggg tgtacatgat 2400 cgaagaggcg attgtctgtg atggtgatct ttccggcgaa ctgcaggagc acatggagat 2460 gaggttcccc attctggtgc agttctctgc acaccttgac gtattttagg ttcgacggaa 2520 gggagaggcc gactaaaaag gaaagtagct cttctttgga gagagagcac ctgggatatg 2580 tgaggaaaat gtttttcgct tgtattctaa aacggggagg cctcatgttg accagtcaat 2640 tggagacacc ccccagatca ctaacccctg tatattggag actggagaca atatatagaa 2700 gtagtaagag gtactactag gattttgaca cgtagcgggc atcctataat att 2753 //