Dbfetch

Dbfetch

ID   AJ245554; SV 1; linear; genomic RNA; STD; VRL; 828 BP.
XX
AC   AJ245554;
XX
DT   15-JUL-2000 (Rel. 64, Created)
DT   15-JUL-2000 (Rel. 64, Last updated, Version 1)
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DE   Potato virus Y partial P1 gene for proteinase, strain PVY-O
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KW   P1 gene; proteinase.
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OS   Potato virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-828
RA   Maki-Valkama T.K.;
RT   ;
RL   Submitted (30-JUL-1999) to the INSDC.
RL   Maki-Valkama T.K., Plant biology/Plant pathology, Helsinki University, P.O.
RL   BOX 28, FIN-00014 Helsinki, FINLAND.
XX
RN   [2]
RX   DOI; 10.1094/MPMI.2000.13.4.366.
RX   PUBMED; 10755299.
RA   Maki-Valkama T.K., Valkonen J.P.T., Kreuze J.F., Pehu E.;
RT   "Transgenic resistance to PVY(O) associated with post-transcriptional
RT   silencing of P1 transgene is overcome by PVY(N) strains that carry highly
RT   homologous P1 sequences and recover transgene expression at infection";
RL   Mol. Plant Microbe Interact. 13(4):366-373(2000).
XX
DR   MD5; bb094ada1274c8b51f5f28ed060e25b8.
DR   EuropePMC; PMC2704195; 19419565.
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FH   Key             Location/Qualifiers
FH
FT   source          1..828
FT                   /organism="Potato virus Y"
FT                   /strain="O"
FT                   /isolate="Loimaa"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland:Loimaa"
FT                   /db_xref="taxon:12216"
FT   CDS             1..>828
FT                   /gene="P1"
FT                   /product="P1 protein"
FT                   /function="proteinase"
FT                   /note="lacks 24 nucleotides from the 3' end"
FT                   /db_xref="GOA:Q9ICV0"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ICV0"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAB97512.1"
FT                   /translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLET
FT                   QLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLEKNDREEYNFQMAAPSIVSK
FT                   ITIAGGDPPSKSEPQAPRGIIHTTPRVRKVKTRPIIKLTEGQMNHLIKQVKQIMSEKRG
FT                   SVHLISKKTTHVQYKEILGATRAAVQTAHMMGLRRRVDFRCDMWTVGLLQRLARTDKWS
FT                   NQVRTINIRRGDSGVILNTKSLKGHFGRSSGDLFIVRGSHEGKLYDTRSRVTQS"
XX
SQ   Sequence 828 BP; 257 A; 175 C; 199 G; 197 T; 0 other;
     atggcaactt acatgtcaac aatttgtttc ggttcgtttg aatgcaagct accatactca        60
     cccgcctctt gcgggcacat tgtgaaggaa cgagaagtgc tggcttccgt tgatcccttc       120
     gcagatctgg aaacacaact tagtgcacga ttgctcaagc aagaatatgc tactgttcgt       180
     gtgctcaaga acggtactct tacttaccga tacaagactg atgcccagat aacgcgcatt       240
     cagaagaaac tggagaagaa tgatagggaa gaatataact tccaaatggc cgctcctagt       300
     attgtgtcaa aaattacaat agctggtgga gatcctccat caaagtctga gccacaagca       360
     ccaagaggga tcattcatac aactccaagg gtgcgtaaag tcaagacacg tcccataata       420
     aagttaacag aaggccagat gaatcatctc attaagcagg taaagcagat tatgtcggag       480
     aagagagggt ctgtccactt aattagtaag aagaccactc atgttcaata taaggagata       540
     cttggagcaa ctcgcgcagc ggttcaaact gcacatatga tgggtttgcg acggagagtg       600
     gacttccgat gtgatatgtg gacagttgga cttttgcaac gtctcgctcg gacggacaaa       660
     tggtccaatc aagtccgcac tatcaacata cgaaggggtg atagtggagt catcttgaac       720
     acaaaaagcc tcaaaggcca ctttggtaga agttcaggag acttgttcat agtgcgtgga       780
     tcacacgagg ggaaattgta cgatacacgt tctagagtta ctcagagt                    828
//