ID   AJ243473; SV 1; linear; genomic RNA; STD; VRL; 978 BP.
XX
AC   AJ243473;
XX
DT   07-JAN-2000 (Rel. 62, Created)
DT   07-JAN-2000 (Rel. 62, Last updated, Version 1)
XX
DE   Cocksfoot mottle virus RNA representing defective interfering RNA type 4
XX
KW   coat protein; cp gene; defective interfering rna.
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OS   Cocksfoot mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
XX
RN   [1]
RP   1-978
RA   Makinen K.M.;
RT   ;
RL   Submitted (17-JUN-1999) to the INSDC.
RL   Makinen K.M., Institute of Biotechnology, University of Helsinki, P.O.Box
RL   56, Viikinkaari9, FIN-00014 University of Helsinki, FINLAND.
XX
RN   [2]
RA   Makinen K., Generozov E., Arshava N., Kaloshin A., MOrozov S.Y.,
RA   Zavriev S.;
RT   "Characterization of defective interfering-like RNAs in cocksfoot mottle
RT   sobemovirus.";
RL   Unpublished.
XX
DR   MD5; 4063e0aa1ab173cfb49a70ba7fd439dc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..978
FT                   /organism="Cocksfoot mottle virus"
FT                   /host="Dactylis glomerata"
FT                   /lab_host="Avena sativa, Hordeum vulgare"
FT                   /isolate="Russian"
FT                   /mol_type="genomic RNA"
FT                   /country="Russia"
FT                   /db_xref="taxon:40979"
FT   5'UTR           1..86
FT   CDS             87..752
FT                   /gene="CP"
FT                   /note="putative truncated coat protein"
FT                   /db_xref="GOA:Q9PWT2"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9PWT2"
FT                   /protein_id="CAB64894.1"
FT                   /translation="MEPVSRPLNPPAAVGSTLKAGRGKTAGVSDWFDTGMITSYLGGFQ
FT                   RTAGTTDSQVFIVSPAALDRVGTIAKAYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLD
FT                   YADSVPTNTRTMASSTSFTTSNVWGGGDGSSLLHTSMKSMGNAVTSALPCDEFSNKWFK
FT                   LSWSTPEESENAHLTDTYVPARFVVRSDFPVVTADQPGHLWLRSRILLKGSVSPSTNL"
FT   3'UTR           753..978
XX
SQ   Sequence 978 BP; 209 A; 255 C; 270 G; 244 T; 0 other;
     ataatagtgc gaagaaagac acactgttat cgttacccag agctcagcag cagcctgggg        60
     gccgccgcag gaggcgtggc cggtcgatgg agccagtctc tcgacctttg aaccctccag       120
     cggcggttgg ttccaccttg aaggctggta gaggcaagac tgctggtgtg agtgactggt       180
     ttgataccgg tatgatcacc agctatctgg gcggtttcca gcgcacagct gggaccactg       240
     actcccaagt tttcattgtg tcacccgctg ctttggaccg tgttggaacc atagccaagg       300
     cgtatgcgtt gtggagacct aagcattggg aaatcgtgta tctccccaga tgttctactc       360
     agacagatgg gtcgattgaa atgggatttc tcttagatta tgcggatagc gtcccaacca       420
     acacccgaac tatggcctcc tctacctcct tcacaacttc aaacgtgtgg ggaggtgggg       480
     atggcagcag cttgctgcac acgtccatga agtccatggg caacgctgtt acgagtgctc       540
     ttccctgtga cgagttctcg aacaagtggt ttaagttatc ttggagcact cctgaggaat       600
     cggagaacgc tcatttgact gacacctatg ttccggcgcg cttcgtggtg aggtctgact       660
     tcccggtagt cacggctgac caacctggtc atctttggct tcggtccagg atcttgctca       720
     agggatcggt ttccccttct acaaatctgt agttaagtac cgcagggatg gcaaacctgt       780
     ataacagtgc ccgcgcttgg tggagtcgcg tttgtccact tggaaatcta actccaaagc       840
     tttgcttgaa gattgacgga ttggtatcat ctccgtaagg ataccgacca ctggctgggc       900
     tcgtcacccc tcctttgtgt ctcacaaacg acgaatctgc gctcggcaaa tgacaggatc       960
     atggccgggg caggtgct                                                     978
//