ID   AJ243471; SV 1; linear; genomic RNA; STD; VRL; 977 BP.
XX
AC   AJ243471;
XX
DT   07-JAN-2000 (Rel. 62, Created)
DT   07-JAN-2000 (Rel. 62, Last updated, Version 1)
XX
DE   Cocksfoot mottle virus RNA representing defective interfering RNA type 2
XX
KW   coat protein; cp gene; defective interfering rna.
XX
OS   Cocksfoot mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
XX
RN   [1]
RP   1-977
RA   Makinen K.M.;
RT   ;
RL   Submitted (17-JUN-1999) to the INSDC.
RL   Makinen K.M., Institute of Biotechnology, University of Helsinki, P.O.Box
RL   56, Viikinkaari9, FIN-00014 University of Helsinki, FINLAND.
XX
RN   [2]
RA   Makinen K., Generozov E., Arshava N., Kaloshin A., MOrozov S.Y.,
RA   Zavriev S.;
RT   "Characterization of defective interfering-like RNAs in cocksfoot mottle
RT   sobemovirus.";
RL   Unpublished.
XX
DR   MD5; 00818a549f164f451d51eb92637fa75a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..977
FT                   /organism="Cocksfoot mottle virus"
FT                   /host="Dactylis glomerata"
FT                   /lab_host="Avena sativa, Hordeum vulgare"
FT                   /isolate="Russian"
FT                   /mol_type="genomic RNA"
FT                   /country="Russia"
FT                   /note="DI-RNA type 2"
FT                   /db_xref="taxon:40979"
FT   5'UTR           1..85
FT   CDS             86..751
FT                   /gene="CP"
FT                   /note="putative truncated coat protein"
FT                   /db_xref="GOA:Q9PWT2"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9PWT2"
FT                   /protein_id="CAB64892.1"
FT                   /translation="MEPVSRPLNPPAAVGSTLKAGRGKTAGVSDWFDTGMITSYLGGFQ
FT                   RTAGTTDSQVFIVSPAALDRVGTIAKAYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLD
FT                   YADSVPTNTRTMASSTSFTTSNVWGGGDGSSLLHTSMKSMGNAVTSALPCDEFSNKWFK
FT                   LSWSTPEESENAHLTDTYVPARFVVRSDFPVVTADQPGHLWLRSRILLKGSVSPSTNL"
FT   3'UTR           752..977
XX
SQ   Sequence 977 BP; 208 A; 255 C; 270 G; 244 T; 0 other;
     ataatagtgc gaagaaagac acactgttat cgttcccaga gctcagcagc agcctggggg        60
     ccgccgcagg aggcgtggcc ggtcgatgga gccagtctct cgacctttga accctccagc       120
     ggcggttggt tccaccttga aggctggtag aggcaagact gctggtgtga gtgactggtt       180
     tgataccggt atgatcacca gctatctggg cggtttccag cgcacagctg ggaccactga       240
     ctcccaagtt ttcattgtgt cacccgctgc tttggaccgt gttggaacca tagccaaggc       300
     gtatgcgttg tggagaccta agcattggga aatcgtgtat ctccccagat gttctactca       360
     gacagatggg tcgattgaaa tgggatttct cttagattat gcggatagcg tcccaaccaa       420
     cacccgaact atggcctcct ctacctcctt cacaacttca aacgtgtggg gaggtgggga       480
     tggcagcagc ttgctgcaca cgtccatgaa gtccatgggc aacgctgtta cgagtgctct       540
     tccctgtgac gagttctcga acaagtggtt taagttatct tggagcactc ctgaggaatc       600
     ggagaacgct catttgactg acacctatgt tccggcgcgc ttcgtggtga ggtctgactt       660
     cccggtagtc acggctgacc aacctggtca tctttggctt cggtccagga tcttgctcaa       720
     gggatcggtt tccccttcta caaatctgta gttaagtacc gcagggatgg caaacctgta       780
     taacagtgcc cgcgcttggt ggagtcgcgt ttgtccactt ggaaatctaa ctccaaagct       840
     ttgcttgaag attgacggat tggtatcatc tccgtaagga taccgaccac tggctgggct       900
     cgtcacccct cctttgtgtc tcacaaacga cgaatctgcg ctcggcaaat gacaggatca       960
     tggccggggc aggtgct                                                      977
//