ID   AJ243469; SV 1; linear; genomic RNA; STD; VRL; 900 BP.
XX
AC   AJ243469;
XX
DT   07-JAN-2000 (Rel. 62, Created)
DT   07-JAN-2000 (Rel. 62, Last updated, Version 1)
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DE   Cocksfoot mottle virus RNA representing defective interfering RNA type 5
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KW   coat protein; cp gene; defective interfering rna.
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OS   Cocksfoot mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
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RN   [1]
RP   1-900
RA   Makinen K.M.;
RT   ;
RL   Submitted (17-JUN-1999) to the INSDC.
RL   Makinen K.M., Institute of Biotechnology, University of Helsinki, P.O.Box
RL   56, Viikinkaari9, FIN-00014 University of Helsinki, FINLAND.
XX
RN   [2]
RA   Makinen K., Generozov E., Arshava N., Kaloshin A., MOrozov S.Y.,
RA   Zavriev S.;
RT   "Characterization of defective interfering-like RNAs in cocksfoot mottle
RT   sobemovirus.";
RL   Unpublished.
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DR   MD5; 19af382b3360dfdde0f72aca97da49e8.
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FH   Key             Location/Qualifiers
FH
FT   source          1..900
FT                   /organism="Cocksfoot mottle virus"
FT                   /host="Dactylis glomerata"
FT                   /lab_host="Avena sativa, Hordeum vulgare"
FT                   /isolate="Norwegian"
FT                   /mol_type="genomic RNA"
FT                   /country="Finland"
FT                   /note="DI-RNA type 5"
FT                   /db_xref="taxon:40979"
FT   5'UTR           1..114
FT   CDS             115..675
FT                   /gene="CP"
FT                   /note="putative truncated coat protein"
FT                   /db_xref="GOA:Q9Q2Q1"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9Q2Q1"
FT                   /protein_id="CAB64890.1"
FT                   /translation="MITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAKAYALWRPKH
FT                   WEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGGGDGSSLLHT
FT                   SVKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVRSDFPVVTAD
FT                   QPGHLWLRSRILLKGSVSPSTNL"
FT   3'UTR           676..900
XX
SQ   Sequence 900 BP; 203 A; 231 C; 237 G; 229 T; 0 other;
     gataatagtg cgaagaaaga cacactgtta tcgttccctc cagcagcggt tggttccacc        60
     ttgaaggctg gtagaggcag gaccgctggt gtgagtgact ggtttgatac cggcatgatc       120
     accagttacc taggtggttt tcagcgcaca gctggaacta ccgactccca ggtattcatt       180
     gtgtcacccg ctgcattgga ccgtgttgga accatagcta aggcgtatgc gttgtggaga       240
     cctaagcatt gggaaatcgt gtatctcccc agatgttcta ctcagacaga tgggtcgatt       300
     gaaatgggat ttctcttaga ttatgcagat agcgtcccaa ccaacacccg aactatggcc       360
     tcctccacct ccttcacaac ttcaaacgtg tggggaggtg gggatggcag cagtttgttg       420
     cacacgtccg tgaagtccat gggcaacgct gttacgagcg ctcttccttg tgatgagttc       480
     tcgaacaaat ggtttaagtt atcttggagc actcctgagg aatcggagaa cgctcattta       540
     actgacacct acgttccggc gcgcttcgtg gtgaggtctg acttcccagt agtcacggct       600
     gaccaacccg gtcatctctg gctccggtcc aggatcttgc tcaagggatc agtttcccct       660
     tctacaaatt tgtagtcaag tactgcaggg atgacaaacc tgtaaaacag tgtccgcgct       720
     tggtggagtc gcgttcgtcc acttggaaat ctaactccaa agctttgctt gaagattgac       780
     ggattggtat catctccgta aggataccga ccactggctg ggctcgtcac ccctcctttg       840
     tgtctcacaa acgacgaatc tgcgctcggc caatgacagg atcatggccg gggcaggtgc       900
//