ID AJ243370; SV 1; linear; genomic RNA; STD; VRL; 4354 BP. XX AC AJ243370; XX DT 28-OCT-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Pothos latent virus complete genome, pigeonpea strain XX KW complete genome. XX OS Pothos latent virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Aureusvirus. XX RN [1] RP 1-4354 RA Lava Kumar P.; RT ; RL Submitted (28-JUN-1999) to the INSDC. RL Lava Kumar P., Virology (GREP), Icrisat, Patancheru, Andhra Pradesh, RL 502324, INDIA. XX RN [2] RA Lava Kumar P., Jones A.T., Sreenivasulu P., Fenton B., Reddy D.V.R.; RT " Characterization of a virus from pigeonpea with affinities to species in RT the genus Aureusvirus, family Tombusviridae."; RL Plant Dis. 85:208-215(2001). XX DR MD5; 0ac05844fb657c2127934d7401d5fe93. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC6095521; 30114234. DR RFAM; RF00171; Tombus_5. XX FH Key Location/Qualifiers FH FT source 1..4354 FT /organism="Pothos latent virus" FT /strain="pigeonpea" FT /mol_type="genomic RNA" FT /country="India:Andhra Pradesh" FT /db_xref="taxon:44562" FT CDS 125..793 FT /product="hypothetical protein, 25K" FT /note="ORF1" FT /db_xref="GOA:Q9IWA0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:Q9IWA0" FT /protein_id="CAB59792.1" FT /translation="MANWCMSVLMFSFVTVYTIVTSLGQGIRRGFRAIVDEVENIYGDM FT CAGFKVALSKLSVSWIVVVGMIFVLNSLVVGLVPTLTMVAIIAACVGAKYGGRVPRYIR FT AHVDRIRKSWEKGVDDDDCCAPLPETSLERVPTKLRPRLACKIAVRAIAKVGLLKRSEA FT NSMVYQRVCLDVMESMKMRWHDRLVILPQAVLACLERPEEVEEVMKAIEASCKGRFDVY FT " FT CDS 125..2344 FT /transl_except=(pos:791..793,aa:OTHER) FT /product="hypothetical protein, 84K" FT /note="ORF2" FT /note="read through stop codon" FT /db_xref="GOA:Q9IWA0" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:Q9IWA0" FT /protein_id="CAB59793.1" FT /translation="MANWCMSVLMFSFVTVYTIVTSLGQGIRRGFRAIVDEVENIYGDM FT CAGFKVALSKLSVSWIVVVGMIFVLNSLVVGLVPTLTMVAIIAACVGAKYGGRVPRYIR FT AHVDRIRKSWEKGVDDDDCCAPLPETSLERVPTKLRPRLACKIAVRAIAKVGLLKRSEA FT NSMVYQRVCLDVMESMKMRWHDRLVILPQAVLACLERPEEVEEVMKAIEASCKGRFDVY FT XGCLLQHRGYNTAIISAIPDGVLLNHEGMVVRKGAPITTERKWYSFAGYASTYEYIVHN FT SSLVNVCRGLVERVFCVVRDGKLQRPLRPKNNVFERKLGNVGRRISSIVGYCPAMTRSE FT FCESYSGTRRATYERARLSLDVLPCTRKDAYLKTFVKAEKINITLKPDPAPRVIQPRDP FT RYNVEVGRYLKPLEPRLMKAIDKLWGEKTAIKGYTVEKVGEILHQKSLRFKNPCFVGLD FT ASRFDQHCSRQALEWEHSVYNAIFRDPYLSELLTWQIDNVGTAYLKDGFVRYRVDGCRM FT SGDMNTSMGNYLIMSCLVYQFCKDIGIDASLANCGDDCVLYLEKEDLPKLKALPDWFGK FT MGYSMKVEKPVFTVEEIEFCQQHPVQLSRGYVMVRRPDVCLTKDLCVVRGGMTTERLQR FT WLYAQHDGGLALTGDCPVLGAFYRRFPSGESHGELSEYSDAHKFKAGKQYGEINSLARY FT SFWLAFGITPDEQLAIERDLMNWTPNVVPGSCDPRPTLLDYCSDN" FT CDS 2356..3474 FT /product="hypothetical protein, 41K" FT /note="ORF3" FT /db_xref="GOA:Q9QBU3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9QBU3" FT /protein_id="CAB59794.1" FT /translation="MALVKRNNNMALIATEAGKLAAVKAGQVMLSPAGRELIWNGVNWV FT RRKLGRSKKSDVILHPGVLPGAIAAPVANTRIIRASKPKFTRSKGSVTIAHRELLGQFN FT NSSGLVVNGGVSGNLYRINPSNPVVFPWLQGIAASFDQYKFDRVQLQYVPMCATTETGR FT VAIYFDKDQQDVEPADRVELANMGHWTESAPWCESTLNVPVDNVKRFMNDNTTTDRKLV FT DLGQIGLATYGGGSTNPVGDLFIHYTITLFEPQPLASLVETEQSGAGAAPFGTNLVTVS FT SNATTTIITFRGPGVYLLALSQRAASFTTLVTAGGAVVNSHTTLFSGPAYQSIANITAT FT IPGGSITYNGTLFGNYTLQVTRAKISNNATLI" FT CDS 3569..4297 FT /product="hypothetical protein, 27K" FT /note="ORF4" FT /db_xref="GOA:Q9QBU2" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/Swiss-Prot:Q9QBU2" FT /protein_id="CAB59795.1" FT /translation="MEIQSLDGVLGEELAIQNEVKKILLSHKTTKAILPLAPISQFSKW FT KIPKQGFYAPIDVKFVLTPHISERAQVRGVVKLVDSRDLSPSRELYRSKEFNIGHGLVI FT EGSQLPFCLPVGDYPLQFEVTVLQSQFRETANLYSTSVEWRMMSSTTPLSRVRSVMGAA FT QQPAMKLQPNFKMSLESSKGGGMKPHQKKSSKPNGHSRRGNLSGEVGGSSSSLPSGAQT FT GEWIDNDYGDGSSEYSGVST" FT CDS 3700..4092 FT /product="hypothetical protein, 14K" FT /note="ORF5" FT /db_xref="GOA:Q9QBU1" FT /db_xref="UniProtKB/Swiss-Prot:Q9QBU1" FT /protein_id="CAB59796.1" FT /translation="MENSQTGVLCPNRCQVCSHTTYIRESSGQGGRQACRFTRFVTQPR FT VVSEQGIQYRSWLSDRGFPATLLSTSGGLSTTIRGHGVAVTIQGDSKSLLNFCRVAYDV FT FHHPVVQSEVCHGSGPATSDEITTKF" XX SQ Sequence 4354 BP; 1119 A; 929 C; 1132 G; 1174 T; 0 other; gcctaaccag cttgttgaga gttgtggagc catccatata gttattctct cgcgcgattt 60 taattgtgtg ggtttgaagg accagtctat cactttgtga ggataaattg taactgtggt 120 caaaatggca aactggtgta tgagtgttct tatgttttct ttcgttactg tctacacgat 180 tgtgacttcc cttgggcagg gcatcagacg tggctttcgg gccattgtcg atgaagttga 240 gaacatctat ggggacatgt gtgctggatt caaggttgct ttaagcaagc ttagtgtctc 300 ctggatagtt gttgtgggca tgatatttgt tcttaatagt ctcgtggttg gcctcgtccc 360 caccctaacc atggttgcta ttatagcagc ctgtgttggg gcaaagtatg ggggtcgtgt 420 cccacgatac attcgggccc atgtggatag aatacgaaaa tcttgggaaa aaggggtgga 480 tgatgatgat tgctgcgctc cattacctga gacttctctc gagagggtgc ccactaagct 540 gcggcctaga ctagcttgca agattgctgt cagggctata gccaaagtgg gattacttaa 600 gaggagtgag gccaactcta tggtttacca aagggtgtgc ctagatgtta tggagagcat 660 gaagatgcgt tggcacgaca ggcttgtcat cctccctcaa gcagttcttg cttgccttga 720 gaggccagag gaagttgagg aagtcatgaa ggccatcgaa gcgtcctgta aggggcgctt 780 tgatgtctac taggggtgcc tattacaaca ccgtggttat aacactgcta tcattagcgc 840 cataccagat ggagtgttat tgaatcacga agggatggtg gtacgtaaag gagcccctat 900 caccactgag cgaaaatggt actcattcgc tggatatgcc agcacttacg agtacattgt 960 gcacaattct tcactcgtca acgtttgtcg tggtttggtt gaacgagtat tttgcgtcgt 1020 gcgagacggt aaattgcagc gacctctgcg ccccaagaat aatgtttttg agaggaagct 1080 tggtaatgtt ggtcgtagaa tcagctcaat cgtcgggtac tgccccgcta tgacacgcag 1140 tgaattctgt gaatcttata gcggcacgcg acgcgccacg tatgaacgag ctagattgtc 1200 cttggatgtt ctcccctgta cccgcaaaga tgcttatctg aaaactttcg ttaaggcgga 1260 gaagatcaat attacactca aacccgaccc cgcaccccgg gtcattcagc cacgtgaccc 1320 taggtacaat gtggaagtgg gacgttactt gaagcctctt gaacccagat tgatgaaggc 1380 cattgataaa ttatgggggg aaaagacggc gattaaggga tacacagtcg agaaggttgg 1440 ggagatctta caccagaaat cacttaggtt taagaatcca tgctttgttg gtcttgacgc 1500 ctcacgtttc gatcagcact gttccaggca agcacttgag tgggaacact cagtgtataa 1560 cgctatcttc agggatcctt acttatccga actattgact tggcagattg acaatgttgg 1620 cactgcttat ctgaaggatg ggtttgttag gtatcgtgtt gatggctgcc gtatgtctgg 1680 ggacatgaac accagcatgg gtaattacct tataatgtct tgtttggtct accagttttg 1740 taaagatatt ggcatcgacg ctagtcttgc caactgcggt gacgattgtg tactttattt 1800 ggagaaagag gacctcccta agctgaaggc attacccgat tggtttggaa agatggggta 1860 ttccatgaaa gtggagaaac ctgttttcac tgtcgaagag atcgagtttt gccaacaaca 1920 cccagtacag cttagcagag gttatgttat ggtcagacgg ccagatgtct gcttgacaaa 1980 ggatttgtgc gttgtccgtg gaggcatgac aacggagaga ctccagcgat ggttatatgc 2040 ccaacatgat ggtggattag cccttacggg tgattgtccc gtgttgggag ccttttaccg 2100 acgtttcccc agtggtgagt cccatgggga gttgtctgaa tattctgacg cacataaatt 2160 taaggccggt aagcagtatg gagaaatcaa cagtctcgct cgttatagtt tttggttggc 2220 attcggtatt acaccggatg aacaactcgc tattgaacgt gacctgatga attggactcc 2280 caacgtggtt cctggatctt gtgatccaag gcccacgttg ttggactact gctcagataa 2340 ctgaccatta tcatcatggc gctcgtaaaa cgaaataata atatggcgtt aattgcaacg 2400 gaagcaggga agttagcagc tgtaaaagcc ggacaagtta tgcttagtcc agcaggaaga 2460 gagttgattt ggaatggtgt gaattgggtt cgcaggaagt tggggagatc caagaagtct 2520 gatgttattc ttcacccagg tgttttacca ggtgccattg ctgcgcctgt agctaatacc 2580 cgaatcatta gagcatccaa gcctaaattt acacgaagca agggatcggt gaccattgcc 2640 caccgtgagt tattgggaca atttaataac tcctcagggc ttgttgtgaa tgggggcgtt 2700 tctggcaatt tatacaggat caatcctagt aatccagtcg tctttccatg gttgcagggt 2760 atagccgcca gttttgatca atacaagttc gatagggtac agctacaata tgttcccatg 2820 tgtgccacca ctgagacggg cagagtagcc atctacttcg ataaggatca acaagatgtt 2880 gaacctgcag accgggtaga gttagctaat atgggtcatt ggacagaaag tgcaccatgg 2940 tgcgagagca ccctaaatgt acctgttgac aacgtaaagc ggtttatgaa tgacaacacc 3000 acaactgatc ggaagctcgt ggatcttgga caaattgggt tagcaacata tgggggagga 3060 agtacaaatc ctgtcggtga tcttttcata cattatacga ttactttgtt tgaaccacag 3120 ccattagcta gtttagttga gacagagcaa tccggtgcgg gtgcggctcc ttttggaacc 3180 aatcttgtga cggtctcaag taatgcaacg acaaccatta ttacctttag aggtccaggt 3240 gtctatctgc tagctttgtc acaacgggct gcctcattca ccacgcttgt cactgctggt 3300 ggggctgttg tcaattctca cacaacgctg ttctctggac cagcgtacca atcaattgca 3360 aacattactg ctactatacc tggggggtcc ataacgtaca atggtacgct gttcggcaac 3420 tacactctcc aggtcacccg ggctaaaatt tccaacaacg cgactttgat atgagtgacc 3480 atgtttgggt acgaacgtag gacggaggag tgatacctgg caatgtctgg gttgaccact 3540 tagtggctta agaagtctga ccagctttat ggaaatacaa tctcttgacg gagtactggg 3600 tgaagaactt gccatacaga acgaagtcaa gaaaatactg ttgagtcata aaactaccaa 3660 agccatacta ccactagcac ccatctcaca attctctaaa tggaaaattc ccaaacaggg 3720 gttctatgcc ccaatagatg tcaagtttgt tctcacacca catatatcag agagagctca 3780 ggtcaggggg gtcgtcaagc ttgtcgattc acgcgatttg tcacccagcc gcgagttgta 3840 tcggagcaag gaattcaata tcggtcatgg cttagtgatc gagggttccc agctaccctt 3900 ctgtctacca gtgggggact atccactaca attcgaggtc acggtgttgc agtcacaatt 3960 cagggagaca gcaaatctct actcaacttc tgtcgagtgg cgtatgatgt cttccaccac 4020 cccgttgtcc agagtgaggt ctgtcatggg agcggcccag caaccagcga tgaaattaca 4080 accaaatttt aagatgtcgt tggaatcatc caagggcggt ggcatgaagc cacatcagaa 4140 gaaaagcagt aaacctaatg gccatagtcg gaggggtaat ctatctgggg aagttggtgg 4200 ttcttcttcc tccctgccct caggtgcaca aactggggag tggatagata atgattatgg 4260 agacggttcg tctgagtact ctggtgtgtc tacatagcac accccaggtg tcataccctg 4320 aaatttagta aggggggcta taaatgacgc ttgg 4354 //