ID AJ242725; SV 1; linear; genomic RNA; STD; VRL; 7263 BP. XX AC AJ242725; XX DT 04-JUN-1999 (Rel. 59, Created) DT 05-DEC-2000 (Rel. 66, Last updated, Version 3) XX DE Barley mild mosaic virus complete genomic RNA sequence, isolate Asl1 XX KW 6K2 peptide; capsid protein; CI protein; core replicase; KW cylindrical inclusion protein; genome-binding protein; NIa-pro; NIa-VpG; KW NIb-pro; nuclear inclusion protein; P3 protein; KW RNA-dependent RNA polymerase; RNA1 polyprotein. XX OS Barley mild mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7263 RA Subr Z.; RT ; RL Submitted (31-MAY-1999) to the INSDC. RL Subr Z., Dpt. of Plant Virology, Institute of Virology, Dubravska 9, RL Bratislava, 84246, SLOVAKIA. XX RN [2] RA Subr Z., Formitchewa V.W., Kuhne T.; RT "The complete nucleotide sequence of RNA1 of barley mild mosaic virus RT (ASL1) and attempts at bacterial expression of the P3 protein"; RL J. Phytopathol. 146:461-467(2000). XX DR MD5; 5b65e7a0ec099cf8e0b5f0717d9dd2ba. XX FH Key Location/Qualifiers FH FT source 1..7263 FT /organism="Barley mild mosaic virus" FT /host="barley" FT /isolate="Asl1" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:12466" FT 5'UTR 1..148 FT CDS 149..6925 FT /product="RNA1 polyprotein" FT /db_xref="GOA:Q9WAA3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9WAA3" FT /protein_id="CAB44430.1" FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIEGCERSVNHLTTFQFAREYGLS FT TTYFEKLSNIGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC FT CCWSPARWCFNSAVFIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADALSNNLQKISRLVNLFLDDN FT RGFATPALDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDDEDATQDDAIYDSDGLQT FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELSASMAQEAKQWSQVVGHTGSGK FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNIRKFYVS FT ATPRDGKKCPEAVRRYEIKTVKSECSSVDTFVRSQEKTNSLYVLDHDTVLVFLAGKAEC FT DRAASNWNKLYSTNMYAYSLTGDNFTMAYEKIVTEMLTKRTIVFCTNILETGVTLNVDC FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGHAICIGNPETRHDLV FT PPETLYEAALLSFVHGVQFYINEHFENAWIEGVTKAQASVMTQFKLSPFLMRDIVRDDG FT AIPLSLHKILKDYTHRNTDLIGTKLSVMSHVYNSWPLYRTVHQSIFRGDSNVPQTLRYA FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDSSSTSRIINLQIGKMHIVNSMEEVK FT ININSYQPSAENLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQIHAKL FT EMIAYSGGEKINMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI FT NKKFKERSTRFSNDSKPETSSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE FT NPMADIGHVNRLLQDHFEDSESQAVHEGLNTMVKCHLTMKDGRQFELDMEQHDPETVAK FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHVQFTTTTERLASYGIRQFKGLDLVVIR FT RPQQIRAVKKDMRASILDTPTEIQMLYLSTKGGKYQVSTSAVCFPHYNNRWGHVISTAE FT GMCGCIVFNPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLDAQEIKPAMLRSTESFSREFPDTQFKL FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD FT RPPHANVFCQDTLTKAKHKMISILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI FT DIVQHLSDDELAQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD FT SSIDGFLFDVIKDIRKHFMDTEHHKELDTIYEEIVNTKICLANGLVIQKNCGNNSGQPS FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFSMSPSFMAKFGCDFS FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH FT AYLSGIAALFESFNTPKLFNLVHTYLLWLVTEHEEELFSMMELKDMFMPLPTREQIALL FT HYVGTEPIVEETFLQAGHEEPDPIVPPVPDTDLTNMAAAPPDNRKSRAVIPRGTSDWSL FT PEPKMRTLGFKSKINIETLANVPDGYMNTFASVATESQRRKWEEAARGDFGITDDEKWE FT KLLIAACIYFADNGTSPNFDEELTMEVNGGLNSIKEYPVRPFVVRAKKISTLRRIFRCY FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR" FT mat_peptide 149..1024 FT /product="P3 protein" FT mat_peptide 1226..3199 FT /product="cylindrical inclusion protein(CI)" FT mat_peptide 3200..3391 FT /product="putative 6K2 peptide" FT mat_peptide 3392..3928 FT /product="nuclear inclusion protein (NIa-VpG)" FT /function="putative genome-binding protein" FT mat_peptide 3929..4567 FT /product="nuclear inclusion protein (NIa-pro)" FT mat_peptide 4568..6169 FT /product="nuclear inclusion protein (NIb-pro)" FT /function="core replicase, RNA-dependent RNA polymerase" FT mat_peptide 6170..6925 FT /product="capsid protein" FT 3'UTR 6926..7263 XX SQ Sequence 7263 BP; 2057 A; 1924 C; 1599 G; 1683 T; 0 other; aaaaataaaa cttcactaca acccaataca aacaacgaac aacaaacaac gaatttgcaa 60 cccatcaaag caacattgcc cgctcgtagc aattcaacca aactcagcaa caaatcaccc 120 ttcgaccaaa cgaactctga ccattgatat ggaggagttc attcctgaag tgttctacca 180 gaaccaggtt caaagcctca agaagattct taaatcctgg aaacgcgaca cttctattta 240 cgcgtatctt gctcgcgagc aagaggtcct agccttcctt gtactgagtc ctgcacacat 300 tgccaaattg aacaaactac tcactgagga gtctgcacga tgcgccctgc ttgcccaaaa 360 ctgtgaaacc atcgaagctc tggccgttgt gcggcaagcc ctgcagggtg tcacgctaca 420 ctttggtgac aatggcatgg agaaaggctg gctgcacatg atgaaagcac ttgatgcgtg 480 ccttgacgaa agcttcagcg agaacgccgc cgcactcaag aaaagcatcc aggcggtcgg 540 tcacaagctt atcgcagcaa aaaaccgcat cgaaggttgc gagcgatctg taaatcacct 600 tacgacgttt caatttgctc gcgaatatgg cttaagtact acatacttcg aaaagttgtc 660 caatatcggt gggcatattc gaagttttgt gtggtccagc gactcaggag aaatcttccc 720 aaagctaaaa agatcatcac gtacgaggcg catctcgaca ttcacgagct actactgggg 780 tgaattttgg tgcaactgca tctggttcct ctgctgctgc tggtcccccg cacgctggtg 840 ctttaattcc gcagttttca tatggagcct gtgtggtgtt ttaaacttat ctatgattgt 900 tctacagttt gctcttaagc gtcactttgg tagatactat tttcgataca taatgtctgg 960 tgtcctagct atttgcgccg tttgttgtgt tcatcttaaa aacagaaaag ggcctatatt 1020 gcaagcctcc caaaaagata agcgttttat tggtatttta gctttctgca ttactgttat 1080 atacatgttt gatgttgatc ttgccgacgc gcttagtaat aatctccaga agatctcccg 1140 ccttgtgaat cttttccttg atgacaaccg tggatttgca acacctgccc tcgacaatct 1200 aaccgacttc acaacaatcc ttcaaagtgg aacatcaagt gacgacctga agattgttca 1260 agacacgttg gctgtagttt tgcaagtcga tgacgaggac gcaactcagg atgatgccat 1320 atatgattcc gatgggcttc agacttttaa acaatgggtc tcacacaacc agctagccgg 1380 aatgcaactt gcacgcccac tacaataccc ttgctcgaac acttatggtc taaccgcgga 1440 caacgttgca gaactatccg ccagcatggc acaggaagca aagcagtggt cacaagttgt 1500 tgggcacact ggttccggga agtccacacg actaccaact gcatacgcca actgcttgaa 1560 aggcttggcc ggacgaaaga aaaatgttct cgtttgcgaa cccacaagag ccgccactgt 1620 caatgtaact agcggtattt cgcagaattt tggcagactt gtttacgggc ggcatgaagg 1680 ctggagcaac ctcggcgata aaacaataca ggtcatgaca tatggttccg cacttgcagc 1740 atggaaagtc gacaacaaat tcctgagcca gtttgacgca gtatttcttg acgagtccca 1800 ccttataaca acgcacgccc ttgtctttga aagcatttgc caggaggtta caaacattcg 1860 caagttctat gtatcagcca caccccgcga tggtaagaag tgtccagagg ccgtgcgcag 1920 atatgaaatc aaaactgtaa aatctgagtg cagtagtgtc gacacttttg ttcgaagcca 1980 ggagaaaaca aactcgcttt acgttctcga ccacgacacc gtcctcgttt ttctcgctgg 2040 aaaggccgag tgtgacagag cagcaagcaa ctggaacaag ctctactcaa ccaacatgta 2100 cgcctactct ctaacaggtg acaacttcac aatggcatat gagaagattg ttacagaaat 2160 gctcactaaa cgcaccattg tcttctgcac gaacatcctg gaaaccggcg tcacccttaa 2220 cgtggactgc gttgtcgact tcggattcac catgcgtccc gagcttgatc ttgttgataa 2280 atcgctaacc ttgatgcgac gccgagtcac cgagaacgaa cgtgcacagc gcattgggcg 2340 cgcaggaaga ctcagaactg gacacgcaat ctgtattggc aatcccgaaa cgcgccacga 2400 cttagtcccg ccagaaacac tctacgaagc agctcttctt agcttcgtgc acggcgtgca 2460 attttacatt aacgaacatt tcgaaaacgc ctggattgaa ggtgtcacaa aggctcaagc 2520 ctccgtcatg acacaattca aactttctcc tttcctcatg cgtgatattg ttcgcgacga 2580 tggcgcaata ccactatcac tccacaagat actaaaggat tacacacacc gcaacaccga 2640 tctgatagga actaaactct ccgttatgtc gcatgtttat aattcatggc ctctttaccg 2700 aacagtgcac caatccatct tccgtggaga ttccaatgtt ccacaaacgc tcagatatgc 2760 acgcgtcccc tttaatgtta gcaccgctca tgattttcca tgggaagatt tcgcacaggc 2820 atgccttgaa ttccagccac gcgtccttca ggtcttcagt gacagcagca gcacttcgcg 2880 cataatcaac ctgcagattg ggaagatgca cattgtcaac tctatggaag aagttaagat 2940 aaacataaac agctaccagc cgtccgcaga aaacctacgc tcagttaaag acagcttcga 3000 aagctcgatc ttccgaacaa aactgcttcg tggaaaccca actgggaaga taactaagcg 3060 catcgagact ctccttgaca acgtgcgagt gctgcaacag atacacgcaa aactcgagat 3120 gattgcatac tcaggtggag agaaaatcaa catggacaag aaatcagttg acgagctaaa 3180 tgagattgtc gaactccaga gcaaaaactc actcactgcc gaggaactgg cgcgcatatt 3240 acacctgaca aaacccacct ccaccttctt caatctgttt gctgaacgtg gccggcaaat 3300 gctcgtcact ctcctggtta tggttgccgc ctcactcatg tatctcgttt tctgggtttc 3360 tcccaggaaa caggacgaca tcaccattga ggggaaaggc agggcataca accgtgacaa 3420 gcgcatgggg tacgactcct acgaggaaga cgaagttcgc aacaagatca acaaaaagtt 3480 caaagagcgc agcacaaggt tctccaatga ctccaagccg gaaacaagct cgaaataccg 3540 caatctgaag caagaatttg ttaacttcta tgatctcaaa accgatgcga acgtgctaca 3600 agccgtgttc actgcaatgg acggggccgt ccttcttcaa accgaaaatc caatggcaga 3660 cattggccat gtcaatagac tgctgcagga ccactttgaa gacagtgaga gccaagctgt 3720 gcatgagggc ctcaacacca tggtcaagtg ccacctaact atgaaagatg gaagacagtt 3780 tgagctcgac atggaacaac acgatcccga aactgtcgcc aaacttgggg gcgaggttgg 3840 tttcagaatg aacagagacg acttacgtca agttggagcc acacgataca tcaacccaag 3900 agcacaaaca tctgcagcga cgctcgaagg catgaccatg aaacccatga gttctttcac 3960 cattgacagc gcaaagatgg ttggcttcat caagaccgca aaagacacac tcaactgcat 4020 cctttacggc gactggatta tagctcctgc gcacatacag cagggcgagg gggacataac 4080 attcatcttc cagcacgtac aattcacgac cacaactgag cgtttagcta gctatggcat 4140 tcgacaattc aaaggtcttg accttgttgt catccggcgc cctcagcaga tacgcgcagt 4200 caagaaggac atgcgtgcta gcattctcga cacacccact gaaatacaaa tgctctactt 4260 gtccactaaa ggtggtaagt accaagtgtc cacgtccgct gtgtgctttc cacactacaa 4320 taaccgatgg ggacacgtca tttcaacagc agaaggcatg tgcggctgta ttgtattcaa 4380 ccccaccacg aaccacatcg ttggaatcca cgtctcctac aacgacacgc gcagaagaaa 4440 tgagtttcaa gctttcacaa gtgacgttct gacaacgatt aatgcacccg gacacgagat 4500 acctttcagc ccatgggtct tcgactggaa gttttgtggg tacacaacaa aaccacgaaa 4560 catgcaaagc gcaccgagca cactcgagcg actcaacatc aatgccacag gatttggttt 4620 caagctcgat gcacaggaga ttaagccagc catgcttcgt tccacagagt cgttctccag 4680 ggagtttcca gacacacagt ttaaactcat tggggaagtg aagaaaggac tcatcgacaa 4740 acacacaatc acaggagaga acccatactt ccttgaattc ctgaacacat tcaaaccata 4800 ccaatgggtg caggccttca tggacgagta cgcaccctcc atccttgcct atgatgcgta 4860 tttcaaagat ctgaagaaat atgataggcc accacacgca aatgttttct gtcaggacac 4920 actaaccaaa gctaaacata agatgatcag catcctcgag gaagcaggca tgggaaggac 4980 cctagtacga accaccgagc aggtcttgct tgacatggcg tggaccacct ccggtggacc 5040 cttgtaccat ggtaagaaga tcgacattgt gcaacacttg tctgacgacg agcttgcaca 5100 gttcagtgag gcctgccaac aggctcttat cactggaacg ctggatggag tctggaacgg 5160 atcactcaaa gccgagctgc gctcttcgca gaaaatcctc gaacggaaaa cccgcgtttt 5220 tactgctgca cccataacaa gcctcattgc gatgaaatac tatgtggatg atttcaacaa 5280 acagttctat aaaacccatc tcaaagcacc gcacacagtc ggaatcaaca agttcaaccg 5340 cggatggcag aatctgtatg agaagctcaa caaacctgga tggacgcatg ggagtgggga 5400 cggttccagg tttgacagtt ccattgatgg attccttttc gatgtcatca aggacattcg 5460 aaagcatttc atggacacgg aacaccacaa agaactcgac acaatctacg aagagatagt 5520 caacacgaag atatgtctgg cgaacggcct ggtcattcaa aagaattgcg ggaacaacag 5580 tgggcagcca agcactgttg tggacaacac actcgcactc atgacagctt ttctctacgc 5640 atatgcccgg ctcactggag atcacgcctt cgaactcatg gacgaaaact tcgtcttcgt 5700 ctgcaatggt gatgacaaca agttttccat gtcacctagc ttcatggcga agtttggatg 5760 cgatttctcc ccattcctct ctgagctcgg gctaacctac gaatttgatg aagcaactga 5820 agacatctgc gaaaacccct acatgtcctt gacgatggtc cgcacctcgt ttgggattgg 5880 tttctctctc tccattgagc gcatcgttgc aatcttgcag tggagtcgcg ccggtggagt 5940 cctgcatgcc tatctctctg gcattgccgc tcttttcgaa tccttcaaca cacccaaact 6000 cttcaatctc gtgcacacat atctcctttg gctcgtcaca gagcacgagg aggaactctt 6060 ctccatgatg gaactcaaag acatgttcat gcccttgccc actagggaac agatagcctt 6120 gctgcactac gttggaactg agcccatcgt ggaggaaaca tttctgcaag caggacacga 6180 agaaccagac cccatcgttc ccccagttcc tgacaccgat ctaacgaaca tggctgccgc 6240 accacccgac aacagaaagt cgcgcgccgt catcccccgt gggaccagtg actggagcct 6300 gcctgaaccc aaaatgcgaa cactgggttt caagtccaag atcaacatcg aaacacttgc 6360 taatgtcccc gacgggtata tgaacacctt tgcatccgtt gcaactgaat cgcaacgtag 6420 gaaatgggag gaggccgcac gtggcgattt cggcatcact gacgatgaga aatgggagaa 6480 gttgctcatt gctgcttgta tatatttcgc agacaatggc acctcaccga atttcgacga 6540 ggaactcact atggaggtta atggcggtct caactccatc aaagagtacc ccgttcgccc 6600 ctttgtcgtt agagccaaaa agatttccac gctgcgcaga atctttcgct gttactccat 6660 cgaaacgaag ctcatgttcg tgaagctgag gcgcgtgcca cactgggcca taaagcacgg 6720 atgcctcgat gagatcgtct ttgatttcat gatccccgac cagttcacct ctaggactgc 6780 gcttgaaaca ctgaagcaga ccaaactggc tgccattggt gttggcacaa gcaattctct 6840 cctcacctcc gagcagacga acatgaggac cactgaaacc cgacggcgca atgactacga 6900 tggtcacgag gcgctcctcc ggtagatctc tcatgcactt acatttcctt ttaagcaatg 6960 catttcaata cgcattttaa ttatatcaag cgtcaagaat ttctcccgct tgcagttaat 7020 ccttataggg tggcactttg tgttatgcaa tggaaaattc agtgacgcaa tcaaccatca 7080 ttggttggtg acaacgcagt actttcttta tttcacatca agcgaccagc acatcgcccg 7140 cttacagcta atcctacctg agggtggcac tctgtgttat gtaatggaat gtgcaatctc 7200 gcaaccaacc gtcattggtt gatggtgcgg ccaacacccg cactcttgta taccggaaag 7260 gtt 7263 //