ID AJ238607; SV 1; linear; genomic RNA; STD; VRL; 6043 BP. XX AC AJ238607; XX DT 15-OCT-1999 (Rel. 61, Created) DT 15-OCT-1999 (Rel. 61, Last updated, Version 1) XX DE Potato mop-top virus RNA1 complete genome, Swedish isolate (Sw) XX KW polymerase. XX OS Potato mop-top virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-6043 RA Savenkov E.I.; RT ; RL Submitted (27-APR-1999) to the INSDC. RL Savenkov E.I., Plant Biology, Slu, box 7080, se-750 07, Uppsala, SWEDEN. XX RN [2] RA Savenkov E.I., Sandgren M., Valkonen J.P.T.; RT "Complete sequence of RNA 1 and the presence of tRNA-like structures in all RT RNAs of Potato mop-top virus, genus Pomovirus"; RL J. Gen. Virol. 80:2779-2784(1999). XX DR MD5; 4cb91bd3d2d8e07ee07f69dba36c7bec. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6043 FT /organism="Potato mop-top virus" FT /isolate="Swedish (Sw)" FT /mol_type="genomic RNA" FT /country="Sweden" FT /note="RNA1 RNA" FT /note="genus Pomovirus" FT /db_xref="taxon:37128" FT CDS 115..4026 FT /product="polymerase" FT /function="replication" FT /note="ORF1" FT /note="readthrough protein" FT /db_xref="GOA:Q9QBU0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9QBU0" FT /protein_id="CAB58364.1" FT /translation="MDQSILSKITSDDYVNAILHTSATRVGSDLHNAMCNVIVDQIKDS FT TEKNKKKKKIDVKRNLNEDQIQLLAELFPERRVVTSSVHRGTHSMAAAMRKIETDVIFT FT SFPKNGVIYDIGGNWATHAKRDDGGFVHCCCPILDFRDAQRKMTRLIDFNRFIDDAKVV FT SAEKAAVAAQIKKDCDLISENAKKDAYDANDLNGTWFCQNKFEDCVYDHSTLGDGKKEA FT YGMAIHSIYDIHLVDLVSAMERKKVRVLKGTFLFSADIIIGKKRGELPSVNGFYIIDGE FT SIKYSFYDDPNCGYEHNLNSLMLYVTKTFVKAAGGAVYYLELTEMRGDTMFFTITDASE FT ARVMGVLHDSSTKCLPLNKRDLVVFPLFDIDRATDELVFREELLSREFVNRALEYAFQL FT KDNQVTAEGLISYFASTNNAVVIGGSARKTSEKVDPKLLPMITTTLMVYQELQKAKQKR FT VLGKLKSKVKEELTLSGILESVVHRVFGRQSLYQRGLGVFAKWMQYSYGQDLVGIHDVP FT LYLEINDRIKLGSALKNVNGFSLSFSELDEKVSLYEEYERERQRISDEIVSEKIGLIGE FT GYVKVGESSLKPKQKVASRDGMAQWVSGECHLYNTMKCEEKPVEKPRRFSKVVLEEWIS FT EGNCFALNNSFGDEVHWFDSLKEACGRAWRKQVSAVTFSDAEYFDNIENTENEELEEEE FT VIKTTEQVEQDWPIGNLPDVDPDDSASAQVCLTESASTSSDEDCDPMEQLIVAACERAF FT ATKKFEEVTMDSQVVQSEEIEIVREGEHAHANLSSGESESSSQSQELVAVGSVPLSKWA FT QMVEDSEVRARQCAVDHDLSWDEVKYAKMPERPEEAEGDDFRTKAKREFLWYLKCKLVA FT DKSTLVEIMRDFIYGQFHSGACETPKNACFLSYEKNVCGEWMFGKRYRHPSKGASSYAV FT RFTREDWKRAKLIKLQWKNAKAEENGEMSSDNSDKPIVPQGETGIYLFCDITFLMNEIP FT ILNRLEISFKKRVQRRAPRITLVDGVPGCGKSTYVVKEANLVNQYVVTIGREAAEDLRE FT RFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSV FT ICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVT FT SANPLVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMRQYLGRGNWNVNTVHE FT SQGKTYDNVVLCRLKATDNEIYPGGRNSSPYMVVGVTRHRRSLVYYTKAEDKLYFDLAE FT MLSVQEGKLMKHLHEEGVK" FT mat_peptide 118..4023 FT /product="polymerase" XX SQ Sequence 6043 BP; 1791 A; 935 C; 1578 G; 1739 T; 0 other; gtatttttat caactctaac tagccaagtg cttaattgag tggttggaga ccagtgattt 60 tgaagcgacc gcttgcgata aaacgcttca aaaaatttgc tgttgttata ttcaatggat 120 cagtctattt tgagtaaaat caccagtgat gattatgtga atgcgatact tcacactagt 180 gccactagag tgggttcgga tttacataat gctatgtgta atgtaatagt agatcagata 240 aaagatagta cagaaaaaaa caaaaagaaa aagaaaatag atgtaaaaag gaatcttaat 300 gaggatcaga tacagttgct tgctgaactt tttcctgaaa gaagagtggt gacatcttca 360 gtgcacagag gtacgcacag catggctgcg gccatgagaa agatagaaac cgatgttatt 420 ttcacctcgt ttccaaagaa tggagtgata tatgatattg gtggaaattg ggcgacccac 480 gccaaacgag atgatggtgg ttttgtgcat tgttgttgtc cgattctcga ctttcgtgat 540 gcgcagagaa aaatgacaag attgatcgat tttaatcggt ttatcgatga tgctaaagtg 600 gtgagcgctg aaaaagctgc agtagcggcc cagataaaga aggactgtga tcttataagt 660 gagaatgcga agaaagatgc ttatgatgcc aatgatctta atggaacttg gttttgtcag 720 aataagtttg aggattgtgt atacgatcac agcactcttg gagatgggaa aaaggaggcc 780 tatggtatgg cgatacacag catttatgac atacatttgg ttgatcttgt gtctgctatg 840 gaaagaaaga aggtgagggt acttaagggc acttttttgt tttctgctga tataataatt 900 ggaaagaaaa ggggtgagtt acctagcgtc aatgggtttt acataattga cggtgagtca 960 ataaaataca gcttttacga tgatcctaat tgtggctatg agcataatct taactcgttg 1020 atgttgtatg tgacaaaaac ctttgtgaaa gctgcaggtg gtgccgttta ttatttggaa 1080 ctgacggaga tgaggggcga tacgatgttt tttaccatca cggatgcttc tgaagcgaga 1140 gtgatgggtg ttttacacga tagctccact aaatgtctgc ctcttaacaa acgggatctg 1200 gtggttttcc cattgtttga tattgacagg gccaccgatg aattggtatt tagagaagaa 1260 ttgttaagca gagagtttgt aaatcgtgct ttggagtatg cttttcagtt aaaggacaac 1320 caggtgacgg cggaaggttt aatcagttac tttgcatcaa ccaacaatgc cgttgtgatc 1380 ggcggttccg ctagaaagac ttctgaaaag gttgatccta agctgttacc gatgattact 1440 accactctga tggtttacca agaattgcag aaagctaaac agaagagagt gttgggaaaa 1500 ttgaaaagca aagtgaaaga agagttaacc ttgtcgggta tactagagag cgtggtgcat 1560 agagtgtttg ggagacaaag cctgtatcaa agaggtttgg gcgtgtttgc taaatggatg 1620 cagtacagtt atggtcaaga tttagttgga attcatgatg tccctttgta tttggagatt 1680 aatgaccgga ttaaattagg gtctgctctg aaaaatgtta atggattttc actgagtttc 1740 tctgaattgg atgagaaagt gagtctatat gaggagtatg agcgagaaag acaacgaata 1800 tcggatgaga ttgtcagtga aaaaattggt ttgattggcg aaggatatgt gaaagtcggg 1860 gagtccagct taaaaccaaa gcagaaagtt gcgtcccgtg acgggatggc gcagtgggta 1920 agtggtgagt gccacttgta taacaccatg aagtgtgagg aaaaaccagt ggagaagccg 1980 aggcgcttta gtaaagtagt tttggaggaa tggatttctg aaggtaattg cttcgcactt 2040 aacaacagtt ttggtgacga agtgcactgg tttgattctc tgaaagaggc gtgcgggaga 2100 gcatggcgga aacaggtttc ggctgtaaca ttttcagatg ctgaatattt tgataacatt 2160 gagaatactg agaatgagga acttgaggaa gaagaggtga ttaaaaccac tgaacaagtg 2220 gaacaagatt ggccgatagg taacttgcct gacgtcgatc ctgatgactc tgcttccgct 2280 caagtgtgtt taacggaatc agcttcaact agtagtgatg aagattgtga tcctatggaa 2340 caattgatag tagcagcttg cgagcgagcg tttgcaacca aaaagtttga ggaagtcaca 2400 atggattcgc aggttgtgca aagtgaggaa atagagattg ttcgcgaggg cgagcatgct 2460 catgcaaatt tatcaagtgg tgagtcagag agttcaagtc aatcacaaga gctggtagcg 2520 gtcggtagcg tacctctcag caaatgggcg cagatggtcg aagactccga ggtcagagct 2580 agacaatgtg cagttgacca cgacctgagc tgggatgagg tgaaatacgc aaaaatgcct 2640 gagagaccgg aagaagctga aggtgatgac tttcgcacga aagcaaaaag agaatttctt 2700 tggtacttga aatgtaagtt ggtggcggac aaatctacgt tagtggagat tatgcgcgat 2760 tttatttatg gtcagtttca cagcggtgct tgtgagactc ctaagaatgc gtgttttctg 2820 tcctacgaga aaaatgtgtg tggagaatgg atgttcggta aaaggtatcg tcatccttct 2880 aagggagcca gctcttatgc agtaaggttt accagagagg attggaagcg tgctaagttg 2940 ataaagttgc agtggaaaaa tgctaaagct gaagaaaatg gtgaaatgtc atcggacaac 3000 agtgataaac cgatcgtgcc acagggcgag acgggaattt atctgttttg tgacatcact 3060 tttttgatga atgaaattcc gattttgaac aggctggaaa tctcatttaa gaagagggtg 3120 caaagaaggg cgcccagaat cacactcgtt gatggtgtac ccggatgtgg aaagtcgact 3180 tatgtggtga aagaagcgaa cttagtcaat cagtatgttg tgacaatcgg tagagaagct 3240 gctgaagatc tgagggagag gtttaaatct gagagaaatg ctaccgccac acagttgaaa 3300 cgtgtgagga ctgtagattc ttatttgctc aatgataccc aatctcgtgc caatgtgctt 3360 cattttgatg aagcgttgat ggcgcatgct ggcatggtgt atttttgtgc ggatgatttg 3420 tctgcaagaa gtgtgatatg tcaaggtgac tctcagcaga tcccgtttat taatagagtg 3480 gagtctatta cgcttcgata ctccaagttg gaaattgata atgttgtgga aaaaagactg 3540 acttatagat cgcctttgga tgtggcatcg tacctgacta agaaaaattt ttatggtaca 3600 tccgtggtga ctagtgctaa tccattggta aggtcgttga agaccgttgg acccagagat 3660 ggtatgactt ccatttatag cataccgaaa ataccaggta cccagtattt gacttttttg 3720 cagagtgaaa aggaagagat gcgtcaatac ttgggaagag gtaactggaa tgtgaacact 3780 gtgcatgaaa gtcagggaaa aacatacgac aatgttgtgt tatgcaggtt gaaggcgacc 3840 gataatgaga tctaccctgg tggtaggaac tcttcgcctt acatggttgt cggtgttacc 3900 cgtcacaggc gttctttggt gtactacact aaggcagagg ataaattgta tttcgatttg 3960 gccgaaatgt tatctgtgca ggaagggaaa ctgatgaaac atttgcatga ggaaggtgtg 4020 aaatgacgcc aggcgtcaaa gtatgaggag ataatggtgt ccgataatgc tgtgactgtc 4080 cctgatgtgg gtaatttggt tgatttgcaa gagatgtatg acatagcatt tcccgggaat 4140 tccattgttg acacttactt tgacggttat gaagtggcca caggaggtct gcagatagat 4200 atgaatgctt cccttactta ttaccctaac aggcaaatga aaatgtggaa agagtgccga 4260 ggtatgtatc ctatgcttag gacagctatg cccgagaaaa gacaaagcgg tttggcagaa 4320 ggtttgttgg ctttgaacaa gcgaaatatg gctgcaccta agttgcagga atctgtgaat 4380 gagttcgaag tgattgaaag cacgattgag aaagcaaaaa aggtattctt tgatgagagt 4440 cgtattgata actctaagtt ggaaacattt gaaggtgcgg cgagatggtg ggtcaaacaa 4500 tcttgcacgg cgcaaaagca gatgttagca gatgttagaa ctctgagtga aatcgatgtg 4560 acatcataca attttatgat aaagggtgat gtaaaaccga aattggactt gtcaccgcag 4620 tctgagtatt ctgcgcttca aacagtagtg taccctgata agattgtgaa tgctttgttt 4680 ggaccgataa tgaaagaaat caatgagaga ataagagttg ctttgaaacc tcatgtgatt 4740 tataacacga ggatgacgtc tgacgagctg gatcctgcag tggagtttct tgatgtaaga 4800 gaagaccatg agtccgttga gattgatttt tcaaagtttg ataagtcgaa aacttcgttg 4860 catattcggg ttgttattga actttacaag ttgtttgggt tagatgagat gatcgcttac 4920 ttgtgggaga agtcgcagtg tcagaccacc attaaagata gggtgaatgg tattatagcg 4980 cagattcttt atcagcagga atcaggtaat tgtgatactt atggttctaa tacttggtct 5040 gccgcattgt cattgttaga gtcactaccc ttggagaaag cgacttttat gatatttggt 5100 ggagacgact ctttaatatt tttcccgaag ggcatggtga ttgaagatcc gtgtaggaga 5160 ttagcttcta tgtggaactt tgattgcaag ctgtttaatt tcaaaaataa ttcattttgt 5220 ggaaaatttt tgataaaagt gggagaaaaa tacaagttcg ctccggatcc ttataagttg 5280 cttacgaaac tgggcaggaa agacataaaa aattctgatt tgttaagtga gatttttact 5340 tctataggtg ataattataa gtcatatgat gactataggg tgttagaagc tcttaacgta 5400 gcagttatgg aacgttataa gttgcgttgt gatgtcatgt ttggtttgtt agcgttaaag 5460 aaatatataa actcattcga tctgtttgct tctttgttca gccataaagg caggtaccag 5520 cgtgttgaag tgggaagaaa tttcgagtgg tgatcacgag agatttttaa gatcgaggtg 5580 aagccccaca gttagtattc ttgtcgctgc aaagtgtgaa gcttattttc gtttgtatac 5640 tatttcttat atgttaatgc ttttacgtgg ttttgcttag taactttgtt tcataagttt 5700 ttaaatcttt tgggtcgtgc atggacctag tcaaaacatg ccgtggacat tacgtcaaat 5760 gttagtgctt acaagacttc ggtctgtggt tcacttaaat cgaaccattg gagtgatcca 5820 acgttaatac tgcgttaagt attggtgctt ccagggctaa accgtggttc accttaatcg 5880 aaccagtctc gcgagggaca aaactgactt tctagctgtt tttgagataa ttccaaaaaa 5940 ctcattatcc ggcctaagga agagcggcca gttgctgctg cgatcaagac acgatcgttc 6000 aaaagggtgc aactcccccc cccttggagg gtatccaaga cca 6043 //