ID   AJ238401; SV 1; linear; genomic RNA; STD; VRL; 1173 BP.
XX
AC   AJ238401;
XX
DT   04-APR-2000 (Rel. 63, Created)
DT   04-APR-2000 (Rel. 63, Last updated, Version 1)
XX
DE   Yam mosaic virus genomic RNA for partial NIb and CP genes
XX
KW   coat protein; cp gene; NIb gene; NIb polymerase; polyprotein.
XX
OS   Yam mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1173
RA   Bousalem M.;
RT   ;
RL   Submitted (20-APR-1999) to the INSDC.
RL   Bousalem M., Lab. de Phytovirologie des Regions Chaudes, Institut de
RL   Recherche pour le Developpement (I. R. D.), LPRC - CIRAD - IRD; BP 5035,
RL   34032 Montpellier Cedex 1, FRANCE.
XX
RN   [2]
RX   PUBMED; 10640564.
RA   Bousalem M., Douzery E.J.P., Fargette D.;
RT   "High genetic diversity, distant phylogenetic relationships and
RT   intraspecies recombination events among natural populations of Yam mosaic
RT   virus: a contribution to understanding potyvirus evolution";
RL   J. Gen. Virol. 81(Pt 1):243-255(2000).
XX
DR   MD5; a84e707b5fbce1d86aaa4113fddddf81.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1173
FT                   /organism="Yam mosaic virus"
FT                   /strain="Trifida/C5"
FT                   /mol_type="genomic RNA"
FT                   /country="France:Guadeloupe"
FT                   /db_xref="taxon:41460"
FT   CDS             <1..1020
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q9IWA4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IWA4"
FT                   /protein_id="CAB86236.1"
FT                   /translation="ALYTNQAPTSSELANYVQHIMEEFCTDDEVCYVSHQADTQPDDDG
FT                   QTIDAGENIETKNKGKDKVSTPLERGGNEQKFSIARNKNETDRAQSSGGGTLETRDRDI
FT                   DAGTVGSVLPRLARKSLSNKMVLPMVRGKPILNLDHLVKYEPAQVHLSNTRSTQTQFDT
FT                   WYMAIKSFYEFEDEQMGMIMNGLMVVWCIENGTSPNLSGMWTMMDGAEQVEYPLKPIIE
FT                   NAKPTFCQIMMHFHDAAEAYIELRNSKEPYMPRYGIQRNLRDYSLARYAFDFLEVTSKT
FT                   PVRAREAHHQMKAVAIGSKVNKMFGFDGKVGSQEEDTERHAASDVTKDMHSLLGMRGM"
FT   mat_peptide     <1..108
FT                   /gene="NIb"
FT                   /product="NIb polymerase"
FT   mat_peptide     109..1017
FT                   /gene="CP"
FT                   /product="coat protein"
FT   3'UTR           1021..>1173
FT                   /gene="CP"
XX
SQ   Sequence 1173 BP; 378 A; 206 C; 290 G; 299 T; 0 other;
     gctctctata ccaaccaagc tccaactagt agtgagttag ctaattatgt gcaacatata        60
     atggaggaat tttgtactga tgatgaagtg tgctacgtta gtcatcaagc agacacacaa       120
     ccggatgatg atggtcaaac tattgatgct ggggaaaaca ttgaaacaaa gaataaaggg       180
     aaagacaaag tcagcacacc actcgagcgc ggtggtaatg aacagaaatt ttctatagca       240
     aggaataaga atgaaacaga tagggcacaa tcaagtggtg gtggaacttt agaaacccgt       300
     gacagagata ttgatgctgg gactgttgga tccgttctgc ctaggttggc taggaaaagt       360
     ctaagcaaca agatggtatt gcccatggtg cgagggaaac cgatactaaa tcttgaccat       420
     cttgtaaaat atgaacctgc tcaagtccat ctatctaaca cacgctctac acaaacgcaa       480
     tttgacacat ggtatatggc aattaagagt ttttacgagt ttgaagatga gcaaatgggc       540
     atgattatga atggactgat ggtggtgtgg tgcatagaga atggcacctc accaaattta       600
     tccgggatgt ggacaatgat ggacggtgcg gagcaagtgg aatacccatt gaaaccgatc       660
     atagaaaatg ccaaacccac attttgtcag ataatgatgc attttcatga cgcagctgaa       720
     gcgtacattg aattgcggaa ctcaaaagaa ccgtatatgc cccgatacgg tattcagcgc       780
     aatttgaggg attactcatt ggctagatat gcgttcgact tcttagaagt aacttctaaa       840
     actccggttc gagcgcgtga agcccaccat cagatgaagg cagtagctat tggaagcaaa       900
     gttaacaaaa tgtttggatt tgatggcaaa gtgggttccc aggaagagga tacagagaga       960
     cacgctgcga gtgatgtcac aaaagacatg cacagccttt taggcatgag aggtatgtag      1020
     agtgttggtt atatatcaga tatatatata attctgttaa gcctacctaa tatatgttgg      1080
     tcacatgcat tctgtgcttg tgagaagacg tattctaatg ttgcattttg gagaaactca      1140
     agacatggag gtctctttga tgtggcggag gag                                   1173
//