ID AJ238124; SV 1; linear; genomic DNA; STD; VRL; 4302 BP. XX AC AJ238124; XX DT 11-OCT-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Avian endogenous retrovirus EAV-HP, complete genome, specific host: Gallus DE gallus domesticus(Chicken,line N) XX KW Gag-env fusion protein; gag-env gene; long terminal repeat. XX OS Avian endogenous retrovirus EAV-HP OC Viruses; Ortervirales; Retroviridae. XX RN [1] RP 1-4302 RA Sacco M.A.; RT ; RL Submitted (09-APR-1999) to the INSDC. RL Sacco M.A., Immunology and Pathology, Institute for Animal Health, Compton, RL Near Newbury, Berkshire, RG20 7NN, UNITED KINGDOM. XX RN [3] RX DOI; 10.1128/JVI.74.3.1296-1306.2000. RX PUBMED; 10627540. RA Sacco M.A., Flannery D.M., Howes K., Venugopal K.; RT "Avian endogenous retrovirus EAV-HP shares regions of identity with avian RT leukosis virus subgroup J and the avian retrotransposon ART-CH"; RL J. Virol. 74(3):1296-1306(2000). XX DR MD5; 4c30e6798ec95e5f5fc1a13b77ba352c. DR EuropePMC; PMC111464; 10627540. DR EuropePMC; PMC114785; 11689680. DR EuropePMC; PMC115148; 11160701. DR EuropePMC; PMC3554524; 23359636. DR EuropePMC; PMC516401; 15367619. XX FH Key Location/Qualifiers FH FT source 1..4302 FT /organism="Avian endogenous retrovirus EAV-HP" FT /host="Gallus gallus domesticus(Chicken,line N)" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /proviral FT /note="Chicken endogenous retrovirus EAV-HP1" FT /db_xref="taxon:93465" FT repeat_region 79..365 FT /rpt_type=LONG_TERMINAL_REPEAT FT primer_bind 366..383 FT CDS 515..3892 FT /gene="gag-env" FT /product="Gag-env fusion protein" FT /db_xref="GOA:Q9QME4" FT /db_xref="InterPro:IPR000721" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR004028" FT /db_xref="InterPro:IPR005166" FT /db_xref="InterPro:IPR008916" FT /db_xref="InterPro:IPR008919" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR012344" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR018154" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR034170" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:Q9QME4" FT /protein_id="CAB58116.1" FT /translation="MDQVIKVLVQFCKDYCGKSTPSRKEIATVLSLLNELGELDSPRHV FT LDSSRWDLLTLALCQRAMASQKATELKTWGLMLGALKAARAEHKLGAVMSGEGAPGSGS FT LEFCRTGAQTGAQTTANKTATEREEDCEKDNEESQRLGGGATTPTAPPNSIALSPPPPY FT PKQPLYPSLATTSEQGAGPSPKGKGEGRLKLTDWGQIKEEVAQKGLAATYTLPVVVSEE FT GGPIWVPLDPKGVARMIEAVEKKGLKSPLTMNALEALTASGPMLPYDIENLMRMVLKPV FT QYTLWREEWHTKLKQMLITAQGDQRNPIYGSDIQRLTGNAPGLLTPQAQVCQLRPGELI FT ATTDAAIDAFRKLARSAEPTTPWTEIAQGPTEPFQEFADRLIKAVEGSDLPRAVHGPVI FT LDCLYQKSSEGVQGILRAAPGRLQTPGEAIKYVLDKQKACPSVAGEVAAAVAGVMMACR FT EADHRSADRQLGPCFKCGQLGHIRAQCRMGTGGGVTCQQCGRKGHAAPQCRARRPPSQG FT NNNGRQSEHGDIIFRPMQAPDLSLPMAALSLSTHERPLVKATISCTNLPPDFQGPLSIF FT VTALIDSGADVTVVTETEWPSSWPAEASQSIMGVGGATPSRRSTNEVQAVVINRDGSLE FT KPALLTPLVARVPGTLLGRDFLRQIGIPQYPLNTFKGYVTNVTACDNDADLASQTACLI FT KALNTTLPWDPQELDILGSQMIKNGTTRTCVTFGSVCYKENNRSIVCHNFDGNFNGTGG FT AEAELRDFIAKWKSDDLLIRPYVNQSWTMVSPINVESFSISRRYCGFTSNETRYYRGDL FT SNWCGSKRGKWSAGYSNGTKCSSNTTGCGGNCTTEWNYYAYGFTFGKQPEVLWNNGTAK FT ALPPGIFLICGDRAWQGIPRNALGGPCYLGQLTMLSPNFTTWIAYGPNITGHRRSRRSL FT SRLSPDCGDELQLWSVTARIFASFFAPGIAAAQALKEIERLACWSVKQANLTSLILNAM FT LEDTSSIRHAVLQNRAAIDFLLLAQGHGCQDVEGMCCFNLSDHSESIHKALQAMKEHTE FT KIRVEDDPIGDWFTRTFGDLGRWLAKGVKTLLFALLVIACLLAIIPCLIKCFQDCLLRT FT MNQFMDERIKYHRIREQL" FT repeat_region 3938..4253 FT /rpt_type=LONG_TERMINAL_REPEAT XX SQ Sequence 4302 BP; 1074 A; 990 C; 1294 G; 944 T; 0 other; tccagctgct catctgcagg acagagcgct tgacaaccca tgagaggaac tgttgtaggc 60 gtagcgaggg aaacgaggtg tgttgtaggc gtagcgaggg aaacgaggtg tgacgcgtgc 120 aggttcctat gccacctgtg tgttatgcca cctgtgtgtg ccaagtgtaa cttcgtgatt 180 ggaggaaaca cttgtattta aacacgtagc ctatagcaat aaacgccatt tgcctcactt 240 actcctgggg tctgggtgag catctggccc cgacctggta aagggtcggt ttcgcccagc 300 agtaagccct acatgtggac agaggacgaa caccggaaga gcgaacggag actacatgca 360 acaagtggtg accccgacgt gatctgtctg ctgagggtag ctgcccggca tgcccgtgac 420 gtggagaaga gcctgtgagg tggcggcagg tcgcgcacgg aagacgtatt gcggttaaga 480 gcctgcgagg tggcggcagg tcgcatacgt aacaatggac caagtcatta aggtacttgt 540 gcagttttgt aaggactact gtggaaaatc tactccttcc cggaaggaga tcgcgacagt 600 tttgtcgctg ttaaatgagc tgggggagct ggactctccc cgccacgttt tggattcgag 660 taggtgggac ttgctcacct tggcgctatg ccagcgcgcc atggccagtc agaaggctac 720 ggaacttaaa acgtggggac tgatgttagg agcccttaag gcggccaggg cagagcacaa 780 acttggcgcg gtcatgagcg gggagggagc tccggggagc ggatctctgg agttttgcag 840 gaccggcgct cagaccggcg ctcagacgac agcgaataaa acggcgacgg agagagagga 900 agattgcgag aaggacaacg aagagtcgca gaggctcggg gggggtgcaa cgacgccgac 960 ggcccctcct aattctattg cgctgtcgcc gcccccgccc taccctaagc agccgttata 1020 tccttccttg gcaacgacat cggagcaggg ggcgggacca tccccaaaag ggaaggggga 1080 ggggagactt aagcttactg attgggggca gatcaaagag gaagtggcac agaaaggcct 1140 ggcggcaact tatacactcc cagttgttgt ctcggaggag ggaggcccaa tctgggtccc 1200 gttggaccca aagggggtag caaggatgat tgaggcagta gaaaagaaag ggctgaagtc 1260 gccattgacg atgaatgccc ttgaggccct cacagcatcg ggcccaatgc tgccttatga 1320 tattgaaaat ttaatgcgca tggtgttgaa accagtgcag tatacgctct ggagagagga 1380 gtggcatacc aaattaaaac aaatgctgat tacggcgcag ggtgatcaaa gaaaccccat 1440 atatgggtct gatatacaga gattaacggg caatgcacca ggtctgctga cccctcaagc 1500 acaagtttgt caacttagac caggagagtt gatagcgact acggacgctg caatagacgc 1560 gttccgaaag cttgcaagga gcgctgagcc cactactccg tggacagaga tcgcgcaagg 1620 ccccacagag ccgtttcagg agtttgcaga cagactaatt aaggcagtgg aaggctcgga 1680 tctgcccaga gcagttcacg gtcccgtcat cctggattgc ttgtatcaga agtccagtga 1740 aggggtgcag gggattttgc gagcggcgcc ggggaggctc caaacccctg gtgaggccat 1800 caagtatgtc ctagataagc aaaaggcctg tccgtctgtg gcaggggagg tagctgcggc 1860 ggtagcagga gtgatgatgg cctgtaggga ggcggaccat cgtagtgcgg accgacagtt 1920 aggaccttgc tttaaatgtg gccagttggg ccatattagg gcccaatgca gaatgggcac 1980 gggtggaggt gtaacatgtc agcagtgtgg gcggaagggt catgcagcac cgcaatgcag 2040 ggcccgtagg cctccaagcc agggaaataa caacgggaga cagtccgagc acggtgacat 2100 catttttcga cctatgcagg cccctgacct aagtttaccc atggcggcgc tgtctctaag 2160 tacccatgag cgccctctgg tgaaagccac tatttcttgc accaacctcc cgccggattt 2220 tcaaggccct ctatctatct ttgtcactgc cctcatagat tccggcgccg acgttactgt 2280 ggtcacggaa acagaatggc catcctcgtg gcccgcggag gcctcgcagt ctattatggg 2340 ggttggaggg gcgaccccct cacgccggtc taccaatgag gtacaagcgg ttgtgattaa 2400 cagggatggc tccttagaga aaccggcgtt gcttacgcca ttggtggcgc gtgtccccgg 2460 aactcttctg gggcgggatt tcttgcgaca gataggcatt ccacagtatc ctctgaacac 2520 cttcaaggga tacgtcacta atgttactgc ttgcgataac gatgccgatt tagccagcca 2580 aacagcatgc ttgataaagg ctctaaatac aaccctccct tgggaccccc aagaattgga 2640 tattttaggg tcccagatga tcaagaacgg aacaacacgt acgtgtgtta cctttggttc 2700 agtgtgctat aaagagaaca atcgcagtat agtctgtcac aattttgatg ggaattttaa 2760 tgggactggt ggggcggaag cagaattgcg tgacttcata gcaaaatgga aaagtgatga 2820 ccttcttata aggccctatg tcaaccaatc atggacgatg gtaagtccaa taaacgtaga 2880 gagtttttca ataagtcgta gatattgtgg attcaccagt aacgagactc gttactatag 2940 aggggacctt tctaattggt gtggttcaaa aaggggaaaa tggtcagcgg ggtacagcaa 3000 cgggacaaaa tgttccagca acacgacggg ttgcggtggt aattgcacaa cggaatggaa 3060 ttattatgca tatgggttta ccttcgggaa acagccagag gtgttgtgga acaatgggac 3120 tgctaaggca ctcccaccag gtattttctt gatttgtggg gacagggctt ggcaaggcat 3180 cccgcgtaat gccttgggag ggccctgtta tctaggacaa ttgactatgc tctctcctaa 3240 ctttaccacc tggatagcgt atgggccgaa cattacgggt caccgccgta gcaggcgctc 3300 gctgagtcgt ctctcgcctg actgcggtga tgagctacag ctatggagtg tgacagcccg 3360 gatatttgct tctttctttg ctcctggtat agcagcagca caggccttaa aggagatcga 3420 acgattggca tgttggtcgg ttaagcaagc gaatttaaca tcattaatat tgaatgcgat 3480 gctggaggac acgagcagca tccggcacgc agtgttgcag aatcgagcag ccatcgattt 3540 cttactcctg gcgcagggac acgggtgtca agacgtggaa gggatgtgtt gcttcaatct 3600 cagcgatcac agtgagtcca ttcacaaggc gctccaagcc atgaaggaac atacagagaa 3660 gatacgggtg gaagatgatc ccatagggga ctggtttacg cgcacgtttg gtgatctagg 3720 aaggtggctc gcgaaaggtg ttaagacgct actgtttgcc ttgcttgtca tagcctgtct 3780 attagctatc attccatgtt taatcaagtg ctttcaggat tgtctattga gaacaatgaa 3840 tcagtttatg gatgaacgca taaaatatca tagaattagg gagcagctgt aggttccgaa 3900 cgcgatgtga cgggagctat cggcataggg agggggagat gttgtaggcg tagcgaggga 3960 aacgaggtgt gttgtaggcg tagcgaggga aacgaggtgt gacgcgtgca ggttcctatg 4020 ccacctgtgt gttatgccac ctgtgtgtgc caagtgtaac ttcgtgattg gaggaaacac 4080 ttgtatttaa acacgtagcc tatagcaata aacgccattt gcctcactta ctcctggggt 4140 ctgggtgagc atctggcccc gacctggtaa agggtcggtt tcgcccagca gtaagcccta 4200 catgtggaca gaggacgaac accggaagag cgaacggaga ctacatgcaa caggaacagg 4260 gctgggccct caactctgct tgaagcagaa ggaggcgtct gc 4302 //