ID AJ223596; SV 1; linear; mRNA; STD; VRL; 6003 BP. XX AC AJ223596; XX DT 04-SEP-1998 (Rel. 56, Created) DT 30-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Beet virus Q genomic RNA 1 XX KW . XX OS Beet virus Q OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-6003 RA Koenig R., Pleij C., Beier C., Commandeur U.; RT "Genome properties of beet virus Q, a new furo-like virus from sugarbeet, RT determined from unpurified virus"; RL J. Gen. Virol. 79:2027-2036(1998). XX RN [2] RP 1-6003 RA Koenig R.; RT ; RL Submitted (21-JAN-1998) to the INSDC. RL Koenig R., Biologische Bundesanstalt fuer Land- und Forstwirtschaft, RL Messeweg 11, Braunschweig, Germany. XX DR MD5; 3476162e4e1127de0cd289f45a3d4aec. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6003 FT /organism="Beet virus Q" FT /host="Beta vulgaris" FT /mol_type="mRNA" FT /db_xref="taxon:71972" FT 5'UTR 1..120 FT CDS 121..4053 FT /product="unknown" FT /db_xref="GOA:Q9WKC2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9WKC2" FT /protein_id="CAA11456.1" FT /translation="MDSILGKLQSQELVDAVLHTSATRTQSELHQTMCNHYGNQIKDAT FT EKLKNKKKIDVKRNLTEDQLQLLCDLFPERRIVSSSVHRGTHSMAAAMRKIETDLVLSS FT FPSEVIYDVGGNWATHAMRSDKRFVHCCCPILDFRDAQRKMTRMINYTKFIESSKELDP FT ATAERAERIRDDTKRIKDQVDAGLLSHHDLNGKWYCQNRFEDCVFEPFSDDTLKKDALV FT CGMAIHSIYDIHLVDLVAAMQRKGIRVLTGTFLFAVDMLLGKKEGELPTVNGFYRVNGN FT KVKYGFYDDPNCGYEHDLDSLLLYITKTFVKSPDGAVYYLELNDLRGDVMFFTLTEATE FT ARAMGVRNDSSFKCLPVVGRGKVVFPIFDLDSKSGELVFKEEILPRDYVSRSLEYVGRM FT KENQLNVETIFGYLASTNNAVIIGGSARKTVEKVDPRLLPMIATTLLVYTEVQRQRQKL FT VLHKLRMRVSEELQFMEIVRCVLHGVFGKKSVYQKGLQVFAKWLNFANGGKILNILDVP FT AFVEVNDRIKLWAEHVKSNGLIFTFSDIEEKARLYEECERDQLISQKLVVDKHGLFCDS FT DEAGKNRYAGEPGCIEKQTGKSTFEDWMAGTGHFSSEQKEIYRGTTNGDVKDKVPQWSM FT KYVESWLECEDHFHSSSCEVKDAFVIPLVKELFNMIRSELLLEHIHFIDDRRDTSEGAQ FT GAESLKKDSITEAAQGCSDIENDDDQETGDHMSDEADEVSNEGIPRNSSEELMDQGYEC FT DNEATPAVIDVVPIIVATSRELKGKGLLECEDIDYESDTVMETGECSRPLEYITDDSDD FT SDNGGGVCEIIPGRWAEMADDSDVAVTMKEASPPVDPMIVCYSRLPTRPDETESDDFRT FT LAKKEFLWYLRCKMIADKSTMLDAIRDFLYGKFHDGKCKTPKDACFLDYSENHCGEWLF FT NKSPKRLGHAYAVKLVDRTWKKCKLVPLCWEKDENGNFVTNKPKFSHDERGLYMMCELT FT FLMNEMVILEKLEKVFLKRKQKRVPRVTLIDGVPGCGKSTHIVKEANLVDHYVLTMGKE FT ASLDLKERFMRERGATESDVKRVRTVDSFIMNDRFSRANVLHFDEALMAHAGTVYFCAD FT MLSARTVICQGDSQQIPFVPRVEGITLKYAKLKIDNVVEKRLTYRSPLDVAAFLTRKGY FT YGNSVIMSANETLRSMKTIGPRTGMTSIYSIPKVANCQYLTFTQAEKEEMEKYLGKGKW FT GVNTVHECQGKTYENVVLVRLKSTANEIYPGGENSKPYVVVGTTRHRRSVIYYTMAEDS FT LFHDISLMMSVQEGKLMKHLFSESVQ" FT CDS 121..5577 FT /transl_except=(pos:4051..4053,aa:OTHER) FT /product="unknown" FT /note="readthrough protein, translation of uaa not given" FT /db_xref="GOA:O90699" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O90699" FT /protein_id="CAA11457.1" FT /translation="MDSILGKLQSQELVDAVLHTSATRTQSELHQTMCNHYGNQIKDAT FT EKLKNKKKIDVKRNLTEDQLQLLCDLFPERRIVSSSVHRGTHSMAAAMRKIETDLVLSS FT FPSEVIYDVGGNWATHAMRSDKRFVHCCCPILDFRDAQRKMTRMINYTKFIESSKELDP FT ATAERAERIRDDTKRIKDQVDAGLLSHHDLNGKWYCQNRFEDCVFEPFSDDTLKKDALV FT CGMAIHSIYDIHLVDLVAAMQRKGIRVLTGTFLFAVDMLLGKKEGELPTVNGFYRVNGN FT KVKYGFYDDPNCGYEHDLDSLLLYITKTFVKSPDGAVYYLELNDLRGDVMFFTLTEATE FT ARAMGVRNDSSFKCLPVVGRGKVVFPIFDLDSKSGELVFKEEILPRDYVSRSLEYVGRM FT KENQLNVETIFGYLASTNNAVIIGGSARKTVEKVDPRLLPMIATTLLVYTEVQRQRQKL FT VLHKLRMRVSEELQFMEIVRCVLHGVFGKKSVYQKGLQVFAKWLNFANGGKILNILDVP FT AFVEVNDRIKLWAEHVKSNGLIFTFSDIEEKARLYEECERDQLISQKLVVDKHGLFCDS FT DEAGKNRYAGEPGCIEKQTGKSTFEDWMAGTGHFSSEQKEIYRGTTNGDVKDKVPQWSM FT KYVESWLECEDHFHSSSCEVKDAFVIPLVKELFNMIRSELLLEHIHFIDDRRDTSEGAQ FT GAESLKKDSITEAAQGCSDIENDDDQETGDHMSDEADEVSNEGIPRNSSEELMDQGYEC FT DNEATPAVIDVVPIIVATSRELKGKGLLECEDIDYESDTVMETGECSRPLEYITDDSDD FT SDNGGGVCEIIPGRWAEMADDSDVAVTMKEASPPVDPMIVCYSRLPTRPDETESDDFRT FT LAKKEFLWYLRCKMIADKSTMLDAIRDFLYGKFHDGKCKTPKDACFLDYSENHCGEWLF FT NKSPKRLGHAYAVKLVDRTWKKCKLVPLCWEKDENGNFVTNKPKFSHDERGLYMMCELT FT FLMNEMVILEKLEKVFLKRKQKRVPRVTLIDGVPGCGKSTHIVKEANLVDHYVLTMGKE FT ASLDLKERFMRERGATESDVKRVRTVDSFIMNDRFSRANVLHFDEALMAHAGTVYFCAD FT MLSARTVICQGDSQQIPFVPRVEGITLKYAKLKIDNVVEKRLTYRSPLDVAAFLTRKGY FT YGNSVIMSANETLRSMKTIGPRTGMTSIYSIPKVANCQYLTFTQAEKEEMEKYLGKGKW FT GVNTVHECQGKTYENVVLVRLKSTANEIYPGGENSKPYVVVGTTRHRRSVIYYTMAEDS FT LFHDISLMMSVQEGKLMKHLFSESVQXRFGSKYEEFVFSDIATKVPDVGEAQALQEMYD FT IAFPGNSTIDTCFDGYEVATGGIHVEIDDLTYYPNKQTKVWSEVKGLTPVLRTAMPEKR FT QGGLVESPLALNKRNMAAPQLQESVNEFEIIEKTVTRARDIFFDVDRIDASVMNTVENA FT ARWWGKQSFTAQKQMIADTRVVHEIDVCTYNFMIKNDVKPKLDLSPQSEYAALQTVVLP FT DKIVNALFGPIMKKINERIRFALKPHVIYNTRMTASELDAAVEFLDVREEFESVEIDFS FT KFDKSKTSLHIRAVLELYRMFGLDDLCAYLWEKSQCQTIVKDRVNGLVAHLLYQQKSGN FT CDTYGSNTWSAALSLIESLPLEKARFMIFGGDDSLIFFPKRMAIPDPCRRLAAVWNFDC FT KMFNFENNAFCGKFLIKVGERYRFAPDPYKLLTKLGRKDIKDGKLLSEIFTSVCDNYRY FT YSDYRVLEALNVAIIERYRLSCDVMFGLCALKKHIGSFSLFSSLFNYNGKYQKCYVDRN FT FDW" FT 3'UTR 5575..6003 XX SQ Sequence 6003 BP; 1796 A; 934 C; 1453 G; 1820 T; 0 other; ataattttta ttctaacagg ttttatccta gcagaataat ttttgtcggc aattggagga 60 gcccgttttt gaaacgataa atcttctcta tatttccggc gttttcttca cttttgaagc 120 atggattcta ttttaggaaa attgcagtca caagagttgg tagatgccgt tttacatact 180 agtgctacga gaacacagtc tgaattgcac cagactatgt gtaatcatta tggtaatcag 240 atcaaagatg ctacagaaaa gttaaaaaac aaaaaaaaaa tagatgtaaa aaggaacttg 300 accgaggatc agttgcaatt actttgcgac ttatttccag agagacgtat agtttcttct 360 tctgttcacc gagggactca cagtatggca gcggccatga ggaagattga aacagactta 420 gtgttatctt cttttcctag cgaagttatt tatgacgttg gaggtaattg ggcaacacac 480 gctatgagaa gtgataagcg tttcgtacat tgctgttgtc cgattttaga cttccgtgat 540 gcgcaacgta agatgacacg tatgataaat tacactaagt ttattgaaag ttccaaggag 600 ttggaccctg ctacggctga gcgagcggaa cgtattcgag acgatacgaa aagaattaaa 660 gatcaagtgg acgctggttt attgagtcac cacgacttga acggcaaatg gtattgtcaa 720 aacagatttg aagactgtgt tttcgaaccg ttttctgacg atacgttaaa gaaagatgcg 780 cttgtttgcg gcatggctat tcatagtatc tatgatatcc acttagtgga tttggtagct 840 gcgatgcaaa ggaagggtat tagagtctta actggaacgt ttttatttgc agtggatatg 900 ttgcttggaa aaaaagaagg cgagttacct accgtcaatg gtttttacag ggttaatggt 960 aataaggtaa aatatggttt ttacgatgat cctaattgtg gttatgaaca tgatttggat 1020 tctttgttat tgtatattac gaagaccttc gtaaaatccc ctgacggagc tgtatattac 1080 ctcgaattga atgatttaag gggtgatgtg atgtttttta cgctgactga agcaacggaa 1140 gccagggcta tgggcgttag aaacgactct tctttcaaat gtctgccagt ggtgggaaga 1200 ggtaaagttg tgtttcctat ttttgatttg gattctaagt cgggtgagtt ggtgttcaaa 1260 gaggagattc ttccacgtga ttatgtgagc agatcattgg aatatgttgg taggatgaaa 1320 gagaatcaat taaatgtgga aacgattttt ggttatcttg catccactaa taatgcggtg 1380 attattgggg gttctgcgcg aaaaacggtt gaaaaggttg atcctagact tttgccaatg 1440 atagctacaa cattgttagt atatactgag gtacagagac aaaggcaaaa gttagtgttg 1500 cacaagttgc ggatgagagt cagtgaggaa ctacaattta tggagattgt gcgctgtgtg 1560 cttcatggcg tatttggcaa gaaaagtgtg taccagaaag ggttgcaagt ttttgccaag 1620 tggttgaatt tcgcgaatgg gggaaaaata ttgaatatat tagacgtccc tgcgttcgtt 1680 gaagtaaacg atcggattaa gttgtgggcg gagcacgtaa aaagtaatgg gcttatcttc 1740 actttctcag atattgagga gaaggctagg ttgtatgagg agtgtgagcg tgaccaatta 1800 atttctcaaa aattagtggt cgataaacac ggtttgtttt gtgatagtga cgaagccggt 1860 aagaacagat acgccggaga acctgggtgt attgagaaac agacgggaaa atcaactttt 1920 gaggattgga tggcaggaac gggtcatttc agtagtgagc aaaaggagat ttatcgtgga 1980 actactaatg gtgacgtaaa agacaaagtt cctcaatgga gtatgaagta cgtcgaaagt 2040 tggttggaat gtgaagatca ctttcattcc tcgtcttgtg aagtgaaaga tgcttttgtg 2100 atacctcttg tgaaagaatt atttaatatg ataaggagtg aattattgtt agagcacata 2160 cattttattg atgatcgcag agatacttct gagggtgcac aaggcgccga gagcttgaaa 2220 aaagactcta tcactgaggc cgcacagggt tgtagtgata ttgagaatga tgacgatcag 2280 gagactggtg atcatatgag tgatgaagct gatgaagtgt ctaacgaggg tatacctagg 2340 aattcctccg aggaattaat ggaccaaggt tacgagtgtg ataatgaggc taccccggct 2400 gtaattgacg ttgtaccaat tatagtggca acaagcagag agttgaaagg aaaaggactg 2460 ctagaatgtg aagatattga ctacgaaagc gacaccgtta tggaaacagg agagtgttcg 2520 cgaccgctgg agtatatcac cgatgactca gacgatagtg ataacggtgg tggagtatgt 2580 gaaataatac cgggaagatg ggcagagatg gccgatgatt ctgacgtcgc cgtgacgatg 2640 aaagaagcga gcccccccgt ggaccccatg atagtgtgtt attcaaggtt acctaccaga 2700 cctgatgaaa ctgaatctga cgattttagg acgcttgcta agaaagagtt cttgtggtat 2760 ttgcgatgca aaatgatagc agacaagtct acgatgttgg atgctatccg agattttcta 2820 tatggaaaat ttcatgatgg gaaatgtaaa accccaaagg atgcgtgttt tttagactat 2880 tctgagaatc actgcggtga gtggttattt aataaatcgc ctaagcgatt aggtcacgct 2940 tatgcagtta aacttgttga tcgtacttgg aagaagtgca agcttgtacc gttgtgctgg 3000 gaaaaggatg agaacggtaa ctttgttaca aataagccaa aattttcaca tgacgagaga 3060 gggctttaca tgatgtgtga gctgacgttt ttgatgaacg aaatggttat tctagagaag 3120 cttgagaaag tttttctgaa aagaaaacaa aaacgtgtac cgcgggtcac gctaattgat 3180 ggtgtgccag gttgtggtaa atccactcat atagttaagg aggctaatct tgttgatcat 3240 tatgtcttaa ctatggggaa agaagcctca ttggacctta aggaaagatt tatgcgcgag 3300 cgaggtgcga cagagagcga tgtgaaaagg gttagaacag tcgattcatt cattatgaat 3360 gatcgttttt ctagagcaaa cgtacttcat ttcgatgaag cgctaatggc tcatgcagga 3420 actgtttatt tttgcgctga tatgttgtcc gccaggactg ttatatgtca aggagattct 3480 caacagattc ctttcgttcc gcgagttgag ggaattactc taaaatatgc taaattgaaa 3540 atagataatg tcgtggaaaa gagattgact tataggtcac cattggatgt tgccgcattt 3600 ttaactcgaa agggttatta cggtaactcg gtgattatga gtgctaatga gactttgaga 3660 tctatgaaaa ctatcggtcc caggacaggt atgacttcca tctattctat tccaaaagtt 3720 gccaattgtc aatatttgac ctttacgcaa gctgaaaaag aagagatgga gaaatacttg 3780 ggcaaaggaa aatggggtgt gaatacagta cacgaatgtc aaggaaaaac ttatgagaac 3840 gttgtactcg taagattgaa aagcactgca aacgaaattt atccaggtgg tgagaactca 3900 aagccttatg tagttgtggg gactacacgg caccgaagaa gtgtaattta ttacactatg 3960 gccgaagata gtctttttca tgacatttca ctaatgatga gtgtgcaaga aggtaaatta 4020 atgaagcatt tgttttcgga atctgttcaa taacggtttg ggtcaaagta cgaagaattc 4080 gtattttcgg atattgctac aaaagtacct gatgtaggtg aagctcaagc tttacaagaa 4140 atgtatgata tagcgtttcc gggaaattct acgattgaca cgtgctttga cgggtatgaa 4200 gttgctacag gtggtataca tgttgaaatt gatgatttga catactaccc taataaacaa 4260 acaaaggttt ggagcgaggt gaaaggttta actccagtat tacgaactgc tatgcctgag 4320 aaaagacaag ggggtctagt ggaaagtcca ctcgctttaa ataaaaggaa tatggctgca 4380 ccacaactgc aggagtctgt taacgagttt gagatcatag aaaagactgt gaccagggct 4440 agagatattt tttttgatgt tgatcgaatt gatgcctctg tcatgaacac tgttgagaat 4500 gccgcgcggt ggtggggcaa acaatctttt actgctcaaa aacagatgat tgcggatact 4560 cgtgtagtcc atgaaattga tgtgtgcact tataatttta tgattaaaaa tgacgttaaa 4620 cctaaactag atctgtcgcc gcaatcagaa tacgctgcct tacaaactgt cgttttacct 4680 gataagattg taaacgctct atttggacct attatgaaaa aaattaatga gcgcattcgg 4740 tttgctttga aaccgcatgt aatatataat actcgcatga ccgcctctga gcttgacgca 4800 gccgttgagt ttttagacgt tagggaagaa tttgagtctg tggagattga tttttcgaaa 4860 tttgataagt caaaaacatc actacacatt cgtgcggtgt tggagttata tcgtatgttt 4920 ggcttagacg atttatgtgc gtacctgtgg gagaaatctc agtgtcaaac tattgttaag 4980 gatagggtga atggattagt tgctcatctt ttgtatcagc agaaatcggg taattgtgac 5040 acctatggtt ccaatacttg gtctgccgcc ttatctttaa ttgaatccct tccattggaa 5100 aaagccagat ttatgatctt tggaggcgat gattctctaa tattctttcc aaaacgtatg 5160 gctataccag atccttgtcg aaggttggct gctgtgtgga actttgactg taaaatgttc 5220 aactttgaga ataacgcatt ttgcgggaaa tttctgatca aggttggtga aagatataga 5280 tttgcgcccg acccttataa actgctcaca aaattgggta gaaaagacat caaagatggt 5340 aaattattga gtgagatttt tacctctgtt tgtgataatt acagatatta tagtgattat 5400 cgcgtactag aggcactaaa tgttgccata atcgagcgtt atagattgtc ttgtgatgtt 5460 atgttcggtc tgtgtgcttt gaaaaagcat ataggttcct tttctttatt ttcatcgttg 5520 tttaattata acggaaaata ccaaaaatgt tacgttgata ggaacttcga ttggtaatca 5580 ttattacctg ccgtctttac ggtttcgttg tattccattg ttgtgataat gttgaatcac 5640 gtttcattac cttttggtag ttataattga taattacgaa tttgttatta atactagttg 5700 atttttctag catctttgtc gtgttgatct agtatgtgtg caacgtgaga tgtgtcgtta 5760 acatctagtg ctttaaagtt cacttaaatc gaacttttct tattgtggtg catacaataa 5820 tgcatagtgt ttgccgttcc acttaaatcg aaacggatat ttctggtctc tagacgctgg 5880 tagttcaata aataaaaaac tatcatttgt cgttacagag atgcgacgag ttgtcgccgc 5940 ttataagaca cataggcgct gtggggtgca aatccccccc taacttgagg gaaatcaagc 6000 ccc 6003 //