ID   AJ223505; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC   AJ223505;
XX
DT   22-JAN-1998 (Rel. 54, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Tomato yellow leaf curl virus-[Cuba] complete genome
XX
KW   C1 gene; C2 gene; C3 gene; C4 gene; CP gene, coat protein; rep gene;
KW   rep protein; V1 gene; V2 gene.
XX
OS   Tomato yellow leaf curl virus-[Cuba]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2781
RA   Bejarano E.R.;
RT   ;
RL   Submitted (16-JAN-1998) to the INSDC.
RL   Bejarano E.R., Departamento de Genetica, Universidad de Malaga, Facultad de
RL   Ciencias. Teatinos. Malaga, 29071, SPAIN.
XX
DR   MD5; b9c2c7e4bd05443954e751c0ab7f0b3c.
DR   EuropePMC; PMC110531; 9811744.
DR   EuropePMC; PMC2074955; 17827315.
DR   EuropePMC; PMC2224568; 17977971.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2781
FT                   /organism="Tomato yellow leaf curl virus-[Cuba]"
FT                   /isolate="Cuban"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:220940"
FT   CDS             155..505
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="V2 protein"
FT                   /db_xref="GOA:Q77B83"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q77B83"
FT                   /protein_id="CAA11422.1"
FT                   /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL
FT                   ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT                   PKAQNIQNVSKP"
FT   CDS             315..1091
FT                   /codon_start=1
FT                   /gene="V1 (CP)"
FT                   /product="Coat protein"
FT                   /db_xref="GOA:O57034"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:O57034"
FT                   /protein_id="CAA11423.1"
FT                   /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW
FT                   TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT                   RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN
FT                   EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT                   NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT   CDS             complement(1088..1492)
FT                   /gene="C3"
FT                   /product="C3 protein"
FT                   /db_xref="GOA:O57035"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:O57035"
FT                   /protein_id="CAA11424.1"
FT                   /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI
FT                   ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFRYEVLKYLDSLGIISINN
FT                   VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT   CDS             complement(1233..1640)
FT                   /gene="C2"
FT                   /product="C2 protein"
FT                   /db_xref="GOA:Q77B82"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q77B82"
FT                   /protein_id="CAA11425.1"
FT                   /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL
FT                   NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ
FT                   HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT   CDS             complement(1549..2622)
FT                   /gene="Rep (C1)"
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:O57036"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:O57036"
FT                   /protein_id="CAA11426.1"
FT                   /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC
FT                   REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK
FT                   DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSSSKSEALNILKEKAPKDYILQFHNL
FT                   SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVYSAARPWRPISIVIEGDSR
FT                   TGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT                   NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT                   SINQGPTQDSQEETNKA"
FT   CDS             complement(2178..2471)
FT                   /gene="C4"
FT                   /product="C4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q77B81"
FT                   /protein_id="CAA11427.1"
FT                   /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ
FT                   QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY"
XX
SQ   Sequence 2781 BP; 757 A; 534 C; 605 G; 885 T; 0 other;
     taatattacc ggatggccgc gccttttcct gttatgtggt ccccacgagg gttacacaga        60
     cgtcactgtc aaccaatcaa attgcatcct caaacgttag ataagtgttc atttgtcttt       120
     atatacttgg tccccaagta ttttgtcttg caatatgtgg gacccacttc taaatgaatt       180
     tcctgaatct gttcacggat ttcgttgtat gttagctatt aaatatttgc agtccgttga       240
     ggaaacttac gagcccaata cattgggcca cgatttaatt agggatctta tatctgttgt       300
     aagggcccgt gactatgtcg aagcgaccag gcgatataat catttccacg cccgtctcga       360
     aggttcgccg aaggctgaac ttcgacagcc catacagcaa ccgtgctgct gtccccattg       420
     tccaaggcac aaacaagcga cgatcatgga cgtacaggcc catgtaccga aagcccagaa       480
     tatacagaat gtatcgaagc cctgatgttc cccgtggatg tgaaggccca tgtaaagtcc       540
     agtcttatga gcagcgggat gatattaagc acactggtat tgttcgttgt gttagtgatg       600
     ttactcgtgg atctggaatt actcacagag tcggtaagag gttctgtgtt aaatcgatat       660
     attttttagg taaagtctgg atggatgaaa atattaagaa gcagaatcac actaatcagg       720
     tcatgttctt tttggtccgt gatagaaggc cctatggaag cagtccaatg gattttggac       780
     aggtttttaa tatgttcgat aatgagccca gtaccgcaac tgtgaagaat gatttgcgtg       840
     ataggtttca agtgatgagg aaatttcatg ctacagttat tggtgggccc tctggaatga       900
     aggaacaggc attagttaag agatttttta aaattaacag tcatgtaact tataatcacc       960
     aggaggcagc caagtacgag aaccatactg aaaacgcctt gttattgtat atggcatgta      1020
     cgcatgcctc taatccagtg tatgcaacta tgaaaatacg catctatttc tatgattcaa      1080
     tatcaaatta ataaaattta tattttatat catgagtttc tgttacattt attgtgtttt      1140
     caagtacatc atacaataca tgatccactg ctctgattac attgttaatg gaaattatac      1200
     caagactatc taaatactta agaacttcat atctaaatac tcttaagaaa cgaccagtct      1260
     gaggctgtaa tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc cccattacct      1320
     tcctgatgtt gtggttgaat cttatctgaa tggaaatgat gtcgtggttc attagaaatg      1380
     gcctctggct gtggtctgtt atcttgaaat agaggggatt gtttatctcc cagataaaaa      1440
     cgccattctc tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattattg      1500
     cagttgaggt ggaggtagta tgagcagcca cagtctaggt ctacacgctt acgccttatt      1560
     ggtttcttct tggctatctt gtgttggacc ttgattgata cttgcgaaca gtggctcgta      1620
     gagggtgacg aaggttgcat tcttgagagc ccaatttttc aaggatatgt ttttttcttc      1680
     gtctagatat tccctatatg aggaggtagg tcctggattg cagaggaaga tagtgggaat      1740
     tcccccttta atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc      1800
     ccccatgaat tccttgaagt gctttaaata atgcgggtct acgtcatcaa tgacgttgta      1860
     ccacgcatca ttactgtaca cctttgggct taggtctaga tgtccacata aataattatg      1920
     ttggcctaga gacctggccc acattgtttt gcctgttctg ctatcaccct caatgacaat      1980
     acttatgggt ctccatggcc gcgcagcgga atacacgacg ttctcggcga cccactcttc      2040
     aagttcatct ggaacttgat taaaagaaga agaaagaaat ggagaaacat aaacttctaa      2100
     aggaggacta aaaatcctat ctaaatttga acttaaatta tgaaattgta aaatatagtc      2160
     ctttggggcc ttttctttta atatattgag ggcctcggat ttactgcttg aattgagtgc      2220
     ttcggcatat gcgtcgttgg cagattgctg acctcctcta gctgatctgc catcgatttg      2280
     gaaaactcca aaatcaatga agtctccgtc tttctccacg taggtcttga catctgttga      2340
     gctcttagct gcctgaatgt ttggatggaa atgtgctgac ctgtttgggg ataccaggtc      2400
     gaagaaccgt tggttcttac attggtattt gccttcgaat tggataagca catggagatg      2460
     tggttcccca ttctcgtgga attctctgca aactttgatg tattttttat ttgttggggt      2520
     ttctatgttt tttaattggg aaagtgcttc ctctttagag agagaacaat tgggatatgt      2580
     taggaaataa tttttggcat atattttaaa taaacgaggc atgttgaaat gaatcggtgt      2640
     ccctcaaagc tctatggcaa tcggtgtatc ggtgtcttac ttatacctgg acacctaatg      2700
     gctatttggt aatttcataa atggtcattg caattcaaaa ttcaaaattc aaaaatcaaa      2760
     tcattaaagc ggtcatccgt a                                                2781
//