ID AJ132845; SV 1; linear; genomic RNA; STD; VRL; 6384 BP. XX AC AJ132845; XX DT 24-FEB-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE tomato mosaic virus genes encoding RNA-dependent RNA polymerase, movement DE protein and coat protein. XX KW coat protein; movement protein; RNA-dependent RNA polymerase. XX OS Tomato mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RA Zhou X., Xue C., Chen Q., Qi Y., Li D.; RT "Complete nucleotide sequence of a Chinese isolate of tomato mosaic virus"; RL Unpublished. XX RN [2] RP 1-6384 RA Zhou X.; RT ; RL Submitted (06-FEB-1999) to the INSDC. RL Zhou X., Zhejiang University, Huajiachi, Institute of Biotechnology 268 RL Kaixuan Road, Hangzhou, Zhejiang 310029, CHINA. XX DR MD5; b15c8036cb2cbd1c0ee4666ab3651d4e. DR EuropePMC; PMC4686597; 26733982. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6384 FT /organism="Tomato mosaic virus" FT /isolate="S-1" FT /mol_type="genomic RNA" FT /proviral FT /db_xref="taxon:12253" FT CDS 72..4922 FT /transl_except=(pos:3420..3422,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="180kDa protein" FT /note="amber termination codon" FT /db_xref="GOA:Q9YKD6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9YKD6" FT /protein_id="CAB36997.1" FT /translation="MAYTQTATSSALLETIRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCGHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVLKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT IKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALVVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKNHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSPESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLSDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYTDVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQXQLQVDSVFKNFNLFVATPKTGDISDMQFYYDKCLPGNSTLLNNYDAVTM FT KLTDISLNVKDCILDMSKSVAAPKDAKPTLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT SPELSGVVDIENTASLVVDKFFDSYLLKEKRKPNKNFSLFSRESLNRWIAKQEQVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDLSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSIDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDVSKYDKSQNEFHCAVE FT YEIWRRLGLEDFLAEVWKQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTVIIASC FT LASMLPMEKLIKGAFCGDDSLLYFPKGCEYPDIQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCNVAESLNNCAYYTQLDDAV FT GEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFLDGSSC" FT CDS 72..3422 FT /product="RNA-dependent RNA polymerase" FT /note="130kDa protein" FT /db_xref="GOA:Q9YKD6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9YKD6" FT /protein_id="CAB36998.1" FT /translation="MAYTQTATSSALLETIRGNNTLVNDLAKRRLYDTAVDEFNARDRR FT PKVNFSKVVSEEQTLIATKAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKHVPNFQ FT KEAFDRYAEMPNEVVCHDTFQTCGHSQECYTGRVYAIALHSIYDIPADEFGAALLRKNV FT HVCYAAFHFSENLLLEDSHVNLDEINACFQRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYKAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVLKDFV FT YTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFFLH FT IKLAVLKDDLLISKFALGPKTVSQHVWDEISLAFGNAFPSIKERLINRKLIKITENALE FT IRVPDLYVTFHDRLVSEYKMSVDMPVLDIRKKMEETEEMYNALSELSVLKNSDKFDVDV FT FSQMCQSLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALQDSEKASDGALVVT FT SRDVEEPSIKGSMARGELQLAGLSGDVPESSYTRSEEIESLEQFHMATASSLIHKQMCS FT IVYTGPLKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASKRWL FT VKPSAKNHAWGVVETHARKYHVALLEHDEFGIITCDNWRRVAVSPESVVYSDMAKLRTL FT RRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANA FT SGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLSDIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTS FT SEKKSVSQEMVSGAASINPVSKPLKGKILTFTQSDKEALLSRGYTDVHTVHEVQGETYA FT DVSLVRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPLVSIIRDLERVSSYLLD FT MYKVDAGTQ" FT CDS 4906..5700 FT /product="movement protein" FT /note="30kDa protein" FT /db_xref="GOA:Q9YJQ9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="PDB:2IP8" FT /db_xref="UniProtKB/Swiss-Prot:Q9YJQ9" FT /protein_id="CAB36999.1" FT /translation="MALVVKGKVNINEFIDLSKSEKLLPSMFTPVKSVMVSKVDKIMVH FT ENESLSEVNLLKGVKLIEGGYVCLVGLVVSGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYGITTKDAEKNIWQVLVNIKNVKMSAGYCPLSLEFVSVC FT IVYKNNTKLGLREKVTSVNDGGPMELSEEVVDEFMENVPMSVRLAKFRTKSSKRGPKNN FT NNLGKGRSGGRPKPKSFDEVEKEFDNLIEDEAETSVADSDSY" FT CDS 5703..6182 FT /product="coat protein" FT /db_xref="GOA:O41345" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/Swiss-Prot:O41345" FT /protein_id="CAB37000.1" FT /translation="MSYSITSPSQFVFLSSVWADPIELLNVCTNSLGNQFQTQQARTTV FT QQQFSEVWKPFPQSTVRFPGDVYKVYRYNAVLDPLITALLGSFDTRNRIIEVENQQSPT FT TAETLDATRRVDDATVAIRSAINNLVNELVRGTGLYNQNTFESMSGLVWTSAPAS" XX SQ Sequence 6384 BP; 1906 A; 1181 C; 1476 G; 1821 T; 0 other; gtatttttac aacaattacc aacaacaaca acaaacaaca acaacattac attttacatt 60 ctacaactac aatggcatac acacaaacag ccacatcgtc cgctttgctt gagaccatcc 120 gaggtaataa taccttggtc aacgatcttg caaagcggcg tctatatgac acagcggtcg 180 atgaatttaa tgctagggac cgcaggccta aagtcaattt ttccaaagta gtaagcgaag 240 aacagacgct tattgcaacc aaagcctacc cagaattcca aattacattc tacaacacgc 300 agaacgctgt gcattccctt gcaggcggtc tccgatcatt agaattggaa tatctgatga 360 tgcaaattcc ctacggatca ttgacatatg atatcggagg taattttgca tctcatctgt 420 tcaaagggcg agcatacgtt cactgctgta tgccgaatct ggatgtccgc gacataatgc 480 ggcacgaggg ccaaaaggac agtattgaac tatacctttc taggctcgag aggggcaaca 540 aacatgtccc aaacttccaa aaggaagctt tcgacagata cgctgaaatg ccaaacgaag 600 tagtctgtca cgatactttc caaacgtgtg ggcattctca agaatgttac acgggaagag 660 tgtatgctat tgctttgcat agtatatacg atatacctgc cgacgagttc ggcgcggcac 720 tgctgagaaa gaatgtacat gtatgttatg ccgctttcca cttttccgag aatttacttc 780 tcgaagattc acacgtcaac ctcgatgaga tcaatgcatg tttccaaaga gatggagaca 840 ggttgacttt ttcctttgca tctgagagca ctcttaatta tagtcatagc tattctaata 900 ttcttaagta tgtttgcaaa acttacttcc cagcctctaa tagagaggtt tacatgaagg 960 aatttttagt aactagagta aatacctggt tttgtaaatt ttctagaata gatactttct 1020 tattgtacaa aggtgtagcg cataagggtg tagatagtga gcagttttac aaggctatgg 1080 aagacgcatg gcactacaaa aagactcttg cgatgtgcaa cagtgaaaga atcttgttag 1140 aggattcttc atcagttaat tactggtttc caaaaatgag ggatatggtg atagttccac 1200 tatttgacat atctctcgag acaagtaaaa gaacacgcaa agaggtctta gttttaaagg 1260 actttgttta tacagtgtta aatcacattc gtacgtacca ggccaaagcg cttacttact 1320 ctaacgtgtt atctttcgtc gaatcaattc gttcgagagt gatcattaac ggggttactg 1380 ctaggtctga gtgggatgtc gataaatcat tattacagtc cttgtcgatg acgttcttcc 1440 tacatatcaa gcttgccgtt ctgaaagacg atcttttgat tagcaagttt gcactcggtc 1500 caaaaactgt ttcacaacat gtgtgggatg agatttccct agctttcggc aatgctttcc 1560 catcgatcaa ggaaagattg ataaaccgga aactgatcaa aattacggag aatgcgttag 1620 agatcagggt gcccgatctt tatgtcactt tccatgatag gttagtttct gagtacaaaa 1680 tgtcagtgga catgccggtg ctagacatta ggaaaaagat ggaagaaact gaggaaatgt 1740 acaatgcact gtccgaactg tctgtactta aaaattcaga caagttcgat gttgatgttt 1800 tttcccagat gtgccaatct ttagaagtcg atccaatgac tgcagcaaag gtaatagtag 1860 ctgttatgag caacgagagt ggtcttactc tcacgtttga acagcccacc gaagctaatg 1920 ttgcgctagc attgcaagat tctgaaaagg cttctgatgg ggcgttggta gttacttcaa 1980 gagatgttga ggaaccgtcc ataaagggtt cgatggcccg tggtgagtta caattggccg 2040 gattatctgg cgacgttcct gaatcttcat acactaggag cgaggagatt gagtctctcg 2100 agcagtttca tatggcaaca gctagttcgt taattcataa gcagatgtgt tcgatcgtgt 2160 acacgggccc tcttaaagtt caacaaatga aaaactttat agacagcctg gtagcctcgc 2220 tctctgctgc ggtgtcgaat ctagtgaaga tcctaaaaga tacagctgcg atcgaccttg 2280 aaactcgtca aaagttcgga gttctggatg ttgcttcgaa aaggtggcta gttaaaccat 2340 ccgcaaagaa ccatgcatgg ggggttgttg agactcatgc gaggaaatat cacgtcgcat 2400 tactggagca cgatgaattt ggcattatta cgtgcgataa ctggcgacgg gtggctgtga 2460 gtcctgagtc ggtagtatat tctgatatgg ctaaactcag gactctgaga agattgctca 2520 aagatggaga accacacgtt agttcagcaa aggtggtttt ggtggatggc gttccagggt 2580 gcggaaaaac gaaggaaatt ctttcgagag ttaatttcga agaagatcta attcttgtcc 2640 ctggtcgtca agctgccgag atgatcagaa gaagagctaa tgcgtcgggc ataatagtgg 2700 ctacaaagga taatgtgcgc accgtcgatt catttttgat gaattacggg aagggggcac 2760 gctgtcagtt caaaagattg ttcatagacg aaggtttgat gctgcatact ggttgtgtga 2820 atttcttggt tgaaatgtct ctgagcgata ttgcatatgt ttatggagac acccaacaaa 2880 ttccgtacat caacagagta actggtttcc cgtaccctgc acactttgca aaattggagg 2940 tcgacgaagt cgaaacaaga agaactactc ttcgttgtcc ggctgatgtc acacacttcc 3000 taaatcaaag gtatgaagga cacgtaatgt gcacgtcttc tgaaaagaaa tcggtttccc 3060 aggaaatggt tagtggggct gcgtctatca atcctgtgtc caagccgctt aaagggaaaa 3120 ttttgacctt cacacagtca gacaaggagg cccttctctc aaggggctat acagatgtcc 3180 atactgtaca tgaggtacaa ggtgagactt atgcagacgt atcgttagtt cgactaacac 3240 ctacgcctgt atctatcatc gcaagagaca gtccgcatgt tctggtctcg ttgtcaagac 3300 acacaaaatc cctaaagtac tacaccgttg tgatggatcc tttagttagt atcattagag 3360 atttagaacg ggttagtagt tacttattag acatgtacaa agtagatgca ggtactcaat 3420 agcaattaca ggtcgactct gtgtttaaaa atttcaatct ttttgtagca actccaaaga 3480 ctggagatat atctgatatg caattttact atgataagtg tcttcctggg aacagcacgt 3540 tgttgaacaa ctacgacgct gttaccatga aattgactga catttctctg aatgtcaaag 3600 attgcatatt agatatgtct aagtctgtag ctgctccgaa agatgccaaa ccaactttaa 3660 taccgatggt acgaacggcg gcagaaatgc ctcgccagac tggactattg gaaaatctag 3720 ttgcgatgat taaaagaaat tttaattcac cagagttgtc cggagtagtt gatattgaaa 3780 atactgcatc tttagtggta gataagtttt ttgatagtta tttacttaag gaaaaaagaa 3840 aaccaaacaa aaatttttca ctgtttagta gagagtctct caataggtgg atagcaaagc 3900 aagaacaagt cacaattggt cagttggccg attttgattt tgtggatctt ccagccgttg 3960 atcagtacag gcatatgatt aaagcgcaac cgaagcagaa actggatctg tcaattcaga 4020 cagaatatcc agcgttgcaa acgattgtgt atcattcaaa gaaaatcaac gcaatatttg 4080 gtcctctttt cagtgagctt acaaggcaat tacttgacag tattgactca agcagattct 4140 tgttctttac gagaaagaca ccggctcaga tcgaagattt cttcggagat cttgacagtc 4200 atgtcccaat ggacgtactt gagttggatg tttcgaagta tgataagtct caaaacgagt 4260 ttcattgtgc tgttgagtac gaaatctgga ggagactggg tctggaggat ttcttggcag 4320 aagtgtggaa acaagggcat aggaaaacca ctctgaaaga ttacactgct ggtataaaaa 4380 cgtgtttatg gtaccagaga aagagtggtg atgttacaac ttttatcggt aataccgtca 4440 tcattgcttc gtgtcttgca tcaatgctcc cgatggaaaa attgattaaa ggagccttct 4500 gcggagatga cagtttgttg tactttccta agggttgtga gtatcccgat atacaacaag 4560 ctgctaatct aatgtggaat tttgaggcca aactgtttaa gaagcaatat gggtacttct 4620 gcgggaggta cgtgattcat cacgatagag gttgcatagt atactacgac cctttgaagc 4680 tgatttcgaa acttggtgct aaacacatca aggattggga tcatttggag gagttcagaa 4740 gatccctctg taatgttgct gagtcgttga acaattgcgc gtattacaca caattggacg 4800 acgctgttgg ggaggttcat aaaaccgccc cacctggttc gtttgtttat aagagtttag 4860 ttaagtattt gtcagataaa gttttgttta gaagtttatt tcttgatggc tctagttgtt 4920 aaaggtaagg taaatattaa tgagtttatc gatctgtcaa agtctgagaa acttctcccg 4980 tcgatgttca cgcctgtaaa gagtgttatg gtttcaaagg ttgataagat tatggtccat 5040 gaaaatgaat cattgtctga agtaaatctc ttaaaaggtg taaaacttat agaaggtggg 5100 tatgtttgct tagttggtct tgttgtgtcc ggtgagtgga atttaccaga taattgccgt 5160 ggtggtgtga gtgtctgctt ggttgacaag agaatggaaa gagcggacga agccacactg 5220 gggtcatatt acactgctgc tgctaaaaag cggtttcagt ttaaagtggt cccaaattac 5280 ggtattacaa caaaggatgc agaaaagaac atatggcagg tcttagtaaa tattaaaaat 5340 gtaaaaatga gtgcgggcta ctgccctttg tcattagaat ttgtgtctgt gtgtattgtt 5400 tataaaaata atacaaaatt gggtttgagg gagaaagtaa cgagtgtgaa cgatggagga 5460 cccatggaac tttcagaaga agttgttgat gagttcatgg agaatgttcc aatgtcggtt 5520 agactcgcaa agtttcgaac caaatcctca aaaagaggtc cgaaaaataa taataattta 5580 ggtaaggggc gttcaggcgg aaggcctaaa ccaaaaagtt ttgatgaagt tgaaaaagag 5640 tttgataatt tgattgaaga tgaagccgag acgtcggtcg cggattctga ttcgtattaa 5700 atatgtctta ctcaatcact tctccatcgc aatttgtgtt tttgtcatct gtatgggctg 5760 accctataga attgttaaac gtttgtacaa attcgttagg taaccagttt caaacacagc 5820 aagcaagaac tactgttcaa cagcagttca gcgaggtgtg gaaacctttc cctcagagca 5880 ccgtcagatt tcctggcgat gtttataagg tgtacaggta caatgcagtt ttagatcctc 5940 taattactgc gttgctgggg tctttcgata ctaggaatag aataatcgaa gtagaaaacc 6000 agcagagtcc gacaacagct gaaacgttag atgctacccg cagggtagac gacgctacgg 6060 ttgcaattcg gtctgctata aataatttag ttaatgaact agtaagaggt actggactgt 6120 acaatcagaa tacttttgaa agtatgtctg ggttggtctg gacctctgca cctgcatctt 6180 aaatgcatag gtgccgaaat ataaagtttg tgtttctaaa acacacgtgg tacgtacgat 6240 aacgtacagt gtttttccct ccacttaaat cgaagggtag tgtcttggag cgcgcggagt 6300 aaacatatat ggttcatata tgtccgtagg cacgtaaaaa aagcgaggga ttcgaattcc 6360 cccggaaccc ccggttgggg ccca 6384 //