ID AJ132711; SV 1; circular; genomic DNA; STD; VRL; 2771 BP. XX AC AJ132711; XX DT 03-FEB-1999 (Rel. 58, Created) DT 22-JUL-2009 (Rel. 101, Last updated, Version 6) XX DE Tomato yellow leaf curl virus-Iran complete genome, isolate Iran XX KW C1 gene; C2 gene; C3 gene; C4 gene; V1 gene; V2 gene; C2 protein; KW C3 protein; C4 protein; V2 protein; capsid protein; KW replication-associated protein. XX OS Tomato yellow leaf curl virus-Iran OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; Tomato yellow leaf curl virus. XX RN [1] RP 1-2771 RA Bananej K.; RT ; RL Submitted (30-NOV-1998) to the INSDC. RL Bananej K., Institut des Sciences Vegetales - C.N.R.S., Avenue de la RL Terrasse, F-91198 Gif sur Yvette, France. XX RN [2] RA Bananej K., Kheyr-Pour A., Salekdeh G.H., Ahoonmanesh A.; RT "Complete nucleotide sequence of Iranian tomato yellow leaf curl virus RT isolate: further evidence for natural recombination amongst begomoviruses"; RL Arch. Virol. 149(7):1435-1443(2004). XX DR MD5; 2cc9de98f4b85ac6c4f303d8bb0e29fb. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC6164481; 30177671. XX FH Key Location/Qualifiers FH FT source 1..2771 FT /organism="Tomato yellow leaf curl virus-Iran" FT /host="Lycopersicon esculentum" FT /mol_type="genomic DNA" FT /db_xref="taxon:220943" FT stem_loop join(2752..2771,1..13) FT /standard_name="conserved hairpin loop" FT /function="part of replication origin" FT regulatory join(2765..2771,1..2) FT /standard_name="conserved nonanucleotide 'TAATATTAC'" FT /function="part of replication origin" FT /regulatory_class="other" FT misc_binding 1 FT /bound_moiety="Y103 of Rep via phosphotyrosylester" FT /note="first base of viral (+) DNA strand, becomes FT covalently bound to Rep protein during replication" FT rep_origin 1 FT /direction=RIGHT FT /note="first base of viral strand" FT regulatory 113..118 FT /gene="v2" FT /regulatory_class="TATA_box" FT CDS 148..498 FT /gene="v2" FT /product="v2 protein" FT /function="required for virus movement" FT /db_xref="GOA:Q9YPS0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9YPS0" FT /protein_id="CAA10747.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNIQNVSKP" FT CDS 308..1084 FT /gene="v1" FT /product="capsid protein" FT /db_xref="GOA:Q9YPR9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9YPR9" FT /protein_id="CAA10748.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGSCKVQSYEQRHDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVIRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /gene="c3" FT /product="c3 protein" FT /db_xref="GOA:Q9YPR8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9YPR8" FT /protein_id="CAA10749.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFKYAVLRYLDNLGVISINN FT VIRAVDHVLYDVLANTINVTESHDIKYKFY" FT regulatory 1083..1089 FT /note="of virion sense transcription" FT /regulatory_class="polyA_signal_sequence" FT regulatory complement(1121..1126) FT /note="of complementary sense transcription" FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1226..1633) FT /gene="c2" FT /product="c2 protein" FT /db_xref="GOA:Q9WKC3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9WKC3" FT /protein_id="CAA10750.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT YQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2621) FT /gene="c1" FT /product="replication-associated protein" FT /function="sequence specific endonuclease" FT /function="nucleotidyl transferase" FT /function="ATPase" FT /function="origin binding protein" FT /db_xref="GOA:Q9YPR7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9YPR7" FT /protein_id="CAA10751.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFILQFH FT NLNNNLDRIFQEPPAPYVSPFLSSSFNQVPEELEVWAAENVVSSAARPWRPNSIIIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYKPL FT FASINQGPTQDSQEETNKA" FT CDS complement(2171..2470) FT /gene="c4" FT /product="c4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9YPR6" FT /protein_id="CAA10752.1" FT /translation="MKMGLLTCMCSSSSKESSSAKTTDSSTSHPQPGQHISIRTFRELR FT VQAMSKPIWKKTETSLIMEFSRSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY" FT regulatory complement(2680..2687) FT /gene="c1" FT /regulatory_class="TATA_box" XX SQ Sequence 2771 BP; 743 A; 542 C; 613 G; 873 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttccac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcattatg tgggacccac ttctaaatga gtttcctgaa 180 tctgttcacg gatttcgctg tatgttagct atcaaatatt tgcagtccgt tgaagaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtat cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaagga tcatgtaaag tccagtcgta 540 cgagcagcgg catgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 tttcttggtc cgagatagaa ggccctatgg aagcagccca atggattttg gacaggtttt 780 taacatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatt aggaaatttc atgccacagt tattggtggg ccctctggaa tgaaagaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatatat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgact ctctgttaca tttattgtgt ttgcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagatt 1200 atctaaatat ctaagaactg catatttaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 attgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gttatcttga aataaagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcat ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctt gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttctc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtctctctg ggcccccatg 1800 aattctttaa agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg actcaggtct agatgtccac ataaataatt atgtgggcct 1920 agcgacctgg cccacattgt tttgcctgtt ctgctatcac cctcgatgat aatactatta 1980 ggcctccatg gccgcgcagc ggaagacacg acgttctcgg ccgcccatac ttcaagttct 2040 tctggaactt gattaaaaga tgaagataaa aagggagaaa cataaggagc cggaggctcc 2100 tgaaaaattc tatctaaatt attatttaaa ttatgaaatt ggagtataaa gtctcttggg 2160 gctttctcct tcagtatatt gagggcctga gctttggacc ctgaattgat tgcctcggca 2220 tatgcgtcgt tggcagattg gcaacctcct ctagctgatc gtccatcgac ctggaaaact 2280 ccatgatcaa ggatgtctcc gtctttttcc atataggttt tgacatcgct tgaactctta 2340 gctccctgaa tgttcggatg gaaatgtgct gacctggttg gggatgtgag gtcgaagaat 2400 ctgttgtttt tgcactggaa ctttccttcg aactggatga gcacatgcaa gtgaggagtc 2460 ccatcttcat gaagctctct gcagattcta atgaattttt tggaagtggg tgtttgtata 2520 tttaataatt gggaaagtgc ctcttcttta gttagagagc atttgggata agtgagaaaa 2580 taattttttg catttatttt aaaccgattg ggggctgcca tattgacttg gtcaatcggt 2640 gtctctcaat ttgctctatg tatcggtgta ttggagtcct atatatatgg agactccaat 2700 ggcatatatg taaatattgt actttaattc aaaatcctca cgctccaaaa agcggccatc 2760 cgtataatat t 2771 //