ID AJ132578; SV 1; linear; genomic RNA; STD; VRL; 7111 BP. XX AC AJ132578; XX DT 08-OCT-1999 (Rel. 61, Created) DT 07-MAR-2015 (Rel. 124, Last updated, Version 4) XX DE Oat golden stripe virus RNA1 complete genome XX KW complete genome; ORF1; ORF1 readthrough; ORF3; putative movement protein; KW replicase; replication protein. XX OS Oat golden stripe virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-7111 RA Adams M.J.; RT ; RL Submitted (27-JAN-1999) to the INSDC. RL Adams M.J., Crop and Disease Management, IACR-Rothamsted, Harpenden, Herts RL AL5 2JQ, UK. XX RN [3] RX DOI; 10.1006/viro.1999.9880. RX PUBMED; 10497118. RA Diao A., Chen J., Gitton F., Antoniw J.F., Mullins A.M., Hall A.M., RA Adams M.J.; RT "Sequences of European wheat mosaic virus and oat golden stripe virus and RT genome analysis of the genus furovirus"; RL Virology 261(2):331-339(1999). XX DR MD5; 6df02a0d6ca6dccd44c9e9119b7f61ad. DR BioSample; SAMEA3283056. DR GrainGenes; AJ132578; AJ132578. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..7111 FT /organism="Oat golden stripe virus" FT /segment="RNA1" FT /host="Avena sativa (oat)" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:45103" FT CDS 117..5678 FT /transl_except=(pos:4152..4154,aa:OTHER) FT /gene="ORF1 readthrough" FT /product="replication protein" FT /db_xref="GOA:Q9IWA9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IWA9" FT /protein_id="CAB57882.1" FT /translation="MPIDSSTILGIINEEEVVRAAIATSATRTNSELHRTVCEHIRGQF FT LDTVENQKTKKKIDVRRDLTQEQLQLLNDLYPERHIVTSNCERGTHSFAAASRKIETDL FT ILSRIPKNANVYDIGGNWATHLKRKDLRKVHCCCPILDFRDAQRKTTRWLSVEKFITDR FT NELMPEVGEKLKEIQEDENFISGNLRKGLVEPKFLTGKWYCENKFEDCVFKAEKAYAMA FT IHSIYDIALDDLANAMEEKRIKYLMGTFLFSVDMLIGKKRGEMTTVDGFYEIDGEDVKY FT GFYDDTNCGYKHNMQQLMEYLTRTFVKAKAGSVYYLELTEQRGDVMFFSMTDATEARMH FT GVAQDESFKCIPIDSKDNVVFPLFELDKRTDVLVFSEIILSRTFVRRAVEYTARLKPNQ FT LNAETVNSYLTSTNNTVIIGGSAKKTVEKVDALLIQQITTTLIVWTELMNARQKRVLTQ FT LRLQMKDDVNFSSLAQAAFHKVFGKVSTYQKALRVFARWISYCHGSDAIEFRNVPLYVE FT ITDRVKLWKQHAPNHGFSFDLEGLDAKIELHKELERERKAISEYVASDKLGELCPKEVD FT AGSVTEVREYQDGRRRATASDLKSGEVFTNFVDDWCNKEDHFNHRHTDAEHKYSAMVAM FT LKSIWEVFVPSMQFAPVYVDVDAKLDSVADDVVVSDGSDDDDDDAPTAPEVVEVTVEKE FT NAEVLPAVVDRAAVWRDYTEALLKGKNVTLPLEVLRTPVPTALENTELCVRSNGKEVLV FT VPVLRTPAPTAPESVESCVRSKGKEVLVVPAEVPLRGSSSRSSESEVRTEHELLEVDMR FT VLAAVTEALDEMEKSLKVVVPETPCKPLYVSDITDSDDDSEPGSKPWGLLAEEESDDSF FT YINSELISNSVKKGVLPKQPDFRKFPTVQQKAKHEFMWYLRCKITSDRTTLRSIIDDHL FT RGVFHNGNCELPSDSCFLDYTSNNGGEWVYGKPSRVGHCYGVGFSLSSAGKVIKCELMK FT LIWDVDERGNPSQKPFNTKTVQYMLLSDITFLMNEMLIFRNLQASLLRKDRTKQAVIML FT KDGVPGCGKSTWILNNANHVKDVVLSMGREATLDLKDKFARKYKCQERELKRIRTVDSY FT LMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIPFVNRVESISL FT QYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSVVGPRGTRPM FT NSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNVILVRLKTT FT ENPIYPGGLKSKPYTIVSVTRHRRSLVYYTAVEDRLFFDIGEMKSVMEDKLMKNLNLEN FT QKXRFGSKYETILICDREVKVPDTGDLVMIQDFYDRVFPGNSTMESYFDGYEVATGDIS FT IEVENCTVQPHKNVRVWQEKSGLVPVLRTAMPEKRQNGMIESLLALKKRNMAASKLQEA FT VNEFELIERTIDRAKKIFLNEDMIDCSATSTMESNMRWWEKQSHTARQQLLKETKLIHE FT IDVCTYNFMIKNDVKPKMDTTPQSEYAALQTVVYPDKIVNALFGPVMKEINERIRYALK FT PHVVYNSRMNADELNRTVEFLDPDEDLQSFEIDFSKFDKSKTSLHIRAVIEFYKLFGLE FT EMLAFLWEKSQCQTTVKDRLNGITAYLLYQQKSGNCDTYGSNTWSAALALLETMPLEHA FT KFMIFGGDDSLLLFPKKICVEDPCRRLASLWNFDCKLFDFKYNMFCGKFLLKVGDKWKF FT APDPMKLITKLGRKDIVDGELLSEIFVSIGDNYRSYRDYRILEGLGPALQERYRTTEDP FT TPALIALKKYVFNFSLFASAFNYNGKFVVKKVSRDFDW" FT CDS 117..4154 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:Q9QBU8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9QBU8" FT /protein_id="CAB57883.1" FT /translation="MPIDSSTILGIINEEEVVRAAIATSATRTNSELHRTVCEHIRGQF FT LDTVENQKTKKKIDVRRDLTQEQLQLLNDLYPERHIVTSNCERGTHSFAAASRKIETDL FT ILSRIPKNANVYDIGGNWATHLKRKDLRKVHCCCPILDFRDAQRKTTRWLSVEKFITDR FT NELMPEVGEKLKEIQEDENFISGNLRKGLVEPKFLTGKWYCENKFEDCVFKAEKAYAMA FT IHSIYDIALDDLANAMEEKRIKYLMGTFLFSVDMLIGKKRGEMTTVDGFYEIDGEDVKY FT GFYDDTNCGYKHNMQQLMEYLTRTFVKAKAGSVYYLELTEQRGDVMFFSMTDATEARMH FT GVAQDESFKCIPIDSKDNVVFPLFELDKRTDVLVFSEIILSRTFVRRAVEYTARLKPNQ FT LNAETVNSYLTSTNNTVIIGGSAKKTVEKVDALLIQQITTTLIVWTELMNARQKRVLTQ FT LRLQMKDDVNFSSLAQAAFHKVFGKVSTYQKALRVFARWISYCHGSDAIEFRNVPLYVE FT ITDRVKLWKQHAPNHGFSFDLEGLDAKIELHKELERERKAISEYVASDKLGELCPKEVD FT AGSVTEVREYQDGRRRATASDLKSGEVFTNFVDDWCNKEDHFNHRHTDAEHKYSAMVAM FT LKSIWEVFVPSMQFAPVYVDVDAKLDSVADDVVVSDGSDDDDDDAPTAPEVVEVTVEKE FT NAEVLPAVVDRAAVWRDYTEALLKGKNVTLPLEVLRTPVPTALENTELCVRSNGKEVLV FT VPVLRTPAPTAPESVESCVRSKGKEVLVVPAEVPLRGSSSRSSESEVRTEHELLEVDMR FT VLAAVTEALDEMEKSLKVVVPETPCKPLYVSDITDSDDDSEPGSKPWGLLAEEESDDSF FT YINSELISNSVKKGVLPKQPDFRKFPTVQQKAKHEFMWYLRCKITSDRTTLRSIIDDHL FT RGVFHNGNCELPSDSCFLDYTSNNGGEWVYGKPSRVGHCYGVGFSLSSAGKVIKCELMK FT LIWDVDERGNPSQKPFNTKTVQYMLLSDITFLMNEMLIFRNLQASLLRKDRTKQAVIML FT KDGVPGCGKSTWILNNANHVKDVVLSMGREATLDLKDKFARKYKCQERELKRIRTVDSY FT LMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIPFVNRVESISL FT QYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSVVGPRGTRPM FT NSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNVILVRLKTT FT ENPIYPGGLKSKPYTIVSVTRHRRSLVYYTAVEDRLFFDIGEMKSVMEDKLMKNLNLEN FT QK" FT CDS 5730..6704 FT /gene="ORF3" FT /product="putative movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9QBU7" FT /protein_id="CAB57884.1" FT /translation="MSTKNISKDVTGSSYAEVYNGMLDAMAEKNPDDESLVTNRQRSFN FT VVNKYVEKALVQDKAITKMRALWTEFTDRNGEKGTPYNMTYSCVLLNIIPTVPKGYPGT FT VVVKLIDSGLSLLDNVIPDQSQMMELGMGPCVMCFFTNYSIPINDVGRAVNLAFQIDAE FT MASKHMSVMNVYAYWHVKSNFLSSYPEPQKSTVSQLILGYDKSLTLKTRGDVRRFVGRS FT LNLASLVPKVPDLLPAHINVNKENVPLLRKEEFIDLTKAERQKDKDLADLKERSKISQA FT RNAAEMRRRASSLSAAEAEKTAAADVAAKLKAKNAPDISFGNF" XX SQ Sequence 7111 BP; 2001 A; 1207 C; 1894 G; 2009 T; 0 other; gtatttcaaa ttttcttcta gtcgttagac tgatataaga aagaattggg atactgtgtt 60 attcacgaaa gtaaggcacg ctacggcgat aaatccttgt ttttgcgttt gacaaaatgc 120 ctatcgatag cagcactata ctgggtatta tcaatgaaga ggaggtggtg agagcggcga 180 tagccacgag cgccacacgt accaactctg aattacacag gactgtttgt gagcacattc 240 gcgggcagtt cttagacacc gtggaaaacc aaaaaacaaa aaaaaaaata gatgttagga 300 gggacttgac gcaggagcaa ttgcagttgt tgaatgattt gtatcctgag aggcacattg 360 ttactagcaa ctgcgagcgt ggcactcata gttttgcggc agcctccaga aagattgaga 420 cagatttgat attgagtcgt atccccaaga acgccaacgt ttatgatatt ggtggtaatt 480 gggccacgca cttgaaaaga aaagacctga ggaaggtaca ctgctgttgt ccgatattag 540 acttccgcga tgctcagagg aagaccacta gatggttatc tgtggagaag tttataactg 600 atcggaatga gttgatgccg gaggttggtg aaaagcttaa ggagatacaa gaagatgaga 660 acttcattag cggcaacctg aggaaagggt tggtggaacc gaagttcttg actggtaagt 720 ggtactgtga gaataagttt gaggattgtg tttttaaggc tgaaaaggct tatgccatgg 780 ctatccatag catatacgat attgctctgg atgatcttgc gaatgcgatg gaagagaaac 840 gaattaagta cttgatgggt acgtttctat tttcggttga catgttgatc ggaaagaaga 900 ggggtgaaat gacgactgtt gatggttttt acgaaatcga tggggaagac gtgaagtacg 960 gtttctatga tgatacaaac tgcggttaca agcacaatat gcagcaactt atggaatact 1020 tgaccaggac ttttgtgaag gcgaaggctg gttcagtgta ctatctggag ttgacggaac 1080 agagaggaga tgtcatgttt ttctccatga cggatgcgac ggaagctagg atgcatggtg 1140 tggcgcagga tgaatcattt aaatgtatac cgattgattc caaagacaat gtcgtttttc 1200 ccttgttcga attggacaag cgcactgacg tgcttgtgtt ttcggaaata atactgtcca 1260 ggacgtttgt gagaagagcg gtggagtaca cggcaagact gaagcctaat cagctgaatg 1320 cagagacggt taatagctat ttgacctcga ccaataatac tgtgattatt ggtggctctg 1380 ccaagaaaac ggttgagaaa gtagatgcgc tgctgattca gcaaattacc actacactga 1440 ttgtatggac tgagttgatg aatgcccgac agaagagagt gttgacgcaa ttaagactgc 1500 aaatgaagga cgatgtgaat ttctcatcgc ttgcccaggc ggcctttcac aaggtttttg 1560 ggaaagtgag tacatatcag aaggcgctga gagtttttgc taggtggatt tcttactgtc 1620 acggatcaga cgctatagag ttcagaaatg tgcccttgta cgtcgagatt acggatagag 1680 tgaaattatg gaagcaacac gcgcccaatc atggtttctc ctttgacttg gagggtttgg 1740 atgccaagat tgagctgcac aaggagctgg agagagagag aaaagcaatt agtgagtatg 1800 tggcttcgga caaacttggt gagttgtgtc ctaaggaagt cgacgcggga agtgtcactg 1860 aagttaggga ataccaggac ggacgaagga gagcgactgc tagcgatctt aaatccggtg 1920 aggttttcac taattttgtt gacgattggt gtaataagga agatcatttt aatcacaggc 1980 atacggacgc tgagcacaag tattccgcta tggtggcgat gctaaaatct atatgggagg 2040 tgtttgtacc ttctatgcag ttcgcacctg tttatgttga tgttgatgcg aagcttgact 2100 cggtagcgga cgatgtcgtc gtttccgacg gaagtgatga cgatgatgat gatgcaccta 2160 cggcgccaga ggttgtggaa gttacagttg aaaaggaaaa tgcggaagtg ctgcctgcgg 2220 ttgtggatag agccgcagtg tggagggact atacagaggc gttgctgaaa gggaagaatg 2280 tgactcttcc tttagaggtt ttgaggacac ccgtccccac tgcacttgag aacacggaac 2340 tgtgtgtcag atcaaatggg aaagaggtcc ttgtggttcc tgttttgagg acaccagccc 2400 ccactgcacc tgagagcgtg gagtcatgtg ttagatcgaa agggaaagaa gtccttgtgg 2460 ttcctgcaga agtaccactt agaggtagtt cgtcacgttc tagcgaaagt gaggtgcgca 2520 ctgagcatga attgttggag gtggatatgc gggtgctcgc tgccgtgacg gaagctttag 2580 acgaaatgga gaaatcgttg aaagtggtgg tgccggaaac gccttgcaaa ccgttgtacg 2640 tctccgacat taccgattca gacgatgata gtgaaccagg ttccaaacct tggggtttgc 2700 tggcagagga agagagtgat gattcgtttt atatcaattc agagctgatc tctaactctg 2760 tgaagaaagg ggtattgcct aagcagcctg acttcaggaa gtttcccact gtgcagcaga 2820 aagcaaagca tgagttcatg tggtacttgc gctgcaagat aacatcagat cgcacgacac 2880 ttagaagtat cattgacgat cacttgagag gggtctttca caacggtaat tgtgagctgc 2940 ctagtgactc gtgtttttta gactacacaa gcaacaatgg aggcgaatgg gtgtatggaa 3000 aaccatccag agttggtcat tgttacggtg tgggtttttc gctgagttcg gcagggaaag 3060 ttatcaagtg tgaattgatg aaactgatat gggatgtcga tgagcggggt aacccttcgc 3120 aaaagccttt caatacgaag acagtgcagt acatgctgtt gagtgacata acatttttga 3180 tgaatgagat gttgattttt aggaacctgc aggcttcttt gttgcggaag gacaggacga 3240 aacaggctgt tatcatgtta aaggatggcg tacccggatg tggaaaatcc acctggatct 3300 taaacaatgc aaatcatgtg aaagacgttg tactttctat gggaagagag gcgactctcg 3360 atctgaagga taaatttgcg agaaagtata agtgtcagga aagagagctg aagagaatac 3420 gtactgtgga ttcttattta atgcatgact gcggaaagac gcttagggcc agcgtcgtgc 3480 attttgatga ggcactgatg gcacatgctg ggatggtgta cttctgcgct gatctgttgg 3540 gtgcgaagaa ggttatctgt caaggtgatt cacagcagat tccctttgtg aacagggtcg 3600 aatctatatc acttcagtat gctaaattgg ttatagatcg gactgaaagt gtgcggatga 3660 cgtacagatc tcctatcgac gtcgcgcact acttgaatgc taaggcttat tatgatggtg 3720 gaagggtgac gacaaagaat gaagttttga gatctatgtc ggttgtcgga cctagaggca 3780 cgaggcctat gaattctgca tattgcgttc cttatgttaa ggatacgcaa tacttgacgt 3840 ttacccaagc tgagaaggat gacttattta aggcgttgag gtctaaaggc tctgtgagtg 3900 ttaatactgt gcatgaagct cagggaaaaa ctttcgacaa tgtaatttta gtgcgtttga 3960 aaaccacgga aaatcccata tatccagggg gactgaagtc gaagccttat actattgttt 4020 ctgtgacgcg gcatcgtcgt tctttagtct actacaccgc tgtggaggat aggttgtttt 4080 tcgatattgg cgagatgaaa agtgtgatgg aagacaaact gatgaagaat ttgaatctcg 4140 agaatcagaa atgacggttt gggtcgaaat acgaaactat cttaatatgt gatagagaag 4200 tgaaggttcc ggacacagga gatcttgtaa tgattcaaga tttttacgat cgagtgtttc 4260 cgggaaattc tacgatggaa tcgtatttcg acgggtatga ggtagcaact ggtgacattt 4320 ctattgaagt tgaaaactgt actgtgcaac ctcacaagaa tgttagggtt tggcaagaaa 4380 aatctggttt ggtgcctgtt ttacggactg cgatgcctga gaagcgacaa aatggtatga 4440 tcgaatcgtt actcgcgtta aagaaaagaa acatggctgc atctaagtta caggaagcgg 4500 taaacgagtt tgaacttatt gagaggacta ttgacagagc aaagaagatt ttcttaaatg 4560 aagatatgat cgattgttcg gccacttcta ctatggaatc taatatgcgt tggtgggaaa 4620 aacagtcgca cacagctagg cagcaattac tgaaagagac taagcttata catgagattg 4680 atgtttgtac ttacaacttc atgattaaga atgacgtgaa gcctaagatg gacactacgc 4740 cgcaatctga gtatgctgcg ttgcagactg tggtttaccc ggataagatt gttaatgctc 4800 tttttgggcc ggtaatgaag gagataaatg agcgcattcg gtacgcgctg aagccacatg 4860 tagtttacaa ctctagaatg aatgcagatg agttaaatcg gacggttgaa tttctggatc 4920 cggacgagga tttacaatct tttgagatag atttctcgaa attcgacaag tcaaagactt 4980 cacttcatat tcgtgctgtg atagagtttt ataagctttt tggcttggag gagatgttgg 5040 cttttctgtg ggagaagtcg caatgtcaga ccactgtgaa ggatagattg aacggtataa 5100 cagcttactt gttgtatcaa caaaaatctg gcaattgtga tacttatggt tcaaacactt 5160 ggtcggctgc cttggctctg ctggagacta tgcctttgga gcacgccaag tttatgatct 5220 ttggaggtga tgattcgctt ttgctgtttc ccaagaagat ctgtgtagag gatccctgta 5280 ggagattggc ttcgctctgg aactttgact gcaaactttt tgattttaag tacaatatgt 5340 tttgcggtaa gttcttgctg aaagttggtg ataaatggaa attcgctccg gatcctatga 5400 aactgatcac aaaattgggg cggaaagata tagttgatgg tgagctcttg tctgagattt 5460 ttgtctctat tggagacaat tacagaagtt accgtgacta tagaattttg gagggtttgg 5520 gacctgcttt gcaggagcgg tatagaacaa ctgaagatcc tacgcccgct ttgattgcgt 5580 taaagaaata tgtctttaac tttagtttgt tcgctagtgc gtttaattat aatggtaagt 5640 ttgtggtgaa gaaagtgagt agagattttg actggtagtc gagtctctcg ttgtttttgt 5700 tcttacctcc tactatattt agctgcacta tgtcgactaa gaatatttca aaagatgtca 5760 ctggttctag ttacgctgaa gtgtacaatg gtatgttgga tgctatggct gagaaaaatc 5820 ctgatgatga gtcactggtt acgaataggc aacgtagttt caatgttgtg aacaaatacg 5880 ttgagaaagc actggtccaa gacaaggcaa tcacgaaaat gcgtgcccta tggacggaat 5940 tcactgatcg taatggcgaa aaaggaacac cgtataatat gacttatagt tgtgttcttt 6000 taaatataat tccgactgtt cctaagggtt atcctggtac tgttgtggtg aagttgatag 6060 actctggatt gtctttattg gacaatgtga tacctgatca atctcaaatg atggagttgg 6120 gtatgggccc ttgtgttatg tgtttcttca cgaactacag cataccgatc aacgatgttg 6180 gaagagcggt gaacttggct ttccaaattg atgctgaaat ggcgagcaag catatgagtg 6240 tgatgaacgt atatgcatac tggcatgtga aaagcaattt tctctcgtct tatcctgaac 6300 cgcagaagtc taccgtatcc caattaattt tgggttacga taaatctctt acgttaaaga 6360 cgcggggtga tgttcgtcgt tttgtgggga ggtctttgaa tttggcatcg ttggttccta 6420 aggttcctga tcttttgcct gctcacataa atgtaaacaa ggaaaatgtt cctctactgc 6480 gaaaagagga atttatcgac ttgacaaagg cagaacgaca gaaagacaaa gatctggctg 6540 acttgaagga aaggagtaaa atcagtcagg ctagaaatgc tgctgaaatg aggcgtcgag 6600 cttcgagtct ctcggctgct gaagcggaga agactgctgc tgccgatgtt gcagcgaagc 6660 taaaggcgaa gaacgcacct gatatatctt ttggaaattt ttagtttctt tttatataca 6720 gtttctaaaa acccaaaaat attttgcttt gtggttgttt aaggctgttg aggtggttta 6780 tcgtggctca gacgatactg agtagtgctt tccagttcac ttaaatagaa ctggttgggc 6840 gtatttcata cgcgatgagt gttagactcc gaaaaatcta acgcggtctt tgcgataaaa 6900 gacagtgctt gataattcac ttaaatcgaa ttatcgtgtt ggcgcttcac ggtgcgttca 6960 aaccgtgagc tttcctctag tttttattga tgtgatttta aaaaaatcaa tatttgacta 7020 tgatgaggag cgattaggag tcgcggttgc tatgacacag caactaagag gggtgcaaat 7080 ccccccccga accggagggt tatccggccc a 7111 //