ID AJ132268; SV 1; linear; genomic RNA; STD; VRL; 7637 BP. XX AC AJ132268; XX DT 28-JAN-1999 (Rel. 58, Created) DT 28-JAN-2003 (Rel. 74, Last updated, Version 5) XX DE Barley yellow mosaic virus, Chinese (Yancheng) genomic segment RNA1 DE complete sequence XX KW 14 kDa protein; 7 kDa protein; coat protein; cylindrical inclusion protein; KW NIa-Pro protease; NIa-Vpg protein; P3 protein; polyprotein. XX OS Barley yellow mosaic virus OC Viruses; Riboviria; Potyviridae; Bymovirus. XX RN [1] RP 1-7637 RA Adams M.J.; RT ; RL Submitted (27-JAN-1999) to the INSDC. RL Adams M.J., Crop and Disease Management, IACR-Rothamsted, Harpenden, Herts, RL AL5 2JQ, UK. XX RN [2] RX DOI; 10.1016/S0168-1702(99)00076-3. RX PUBMED; 10500279. RA Chen J., Shi N., Chen Y., Diao A., Chen D., Wilson M.A., Antoniw J.F., RA Adams M.J.; RT "Molecular analysis of barley yellow mosaic virus isolates from China"; RL Virus Res. 64(1):13-21(1999). XX DR MD5; 7a60700547299baae751263ef119e7a5. XX FH Key Location/Qualifiers FH FT source 1..7637 FT /organism="Barley yellow mosaic virus" FT /segment="RNA1" FT /host="barley" FT /isolate="Yancheng" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:12465" FT 5'UTR 1..171 FT CDS 172..7404 FT /product="polyprotein" FT /db_xref="GOA:Q9YJW3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9YJW3" FT /protein_id="CAA10637.1" FT /translation="MEQTLAQAVSRRNKTDTPMAEERKHFSPMNFSANFVAPELFYSAN FT VRKIKNIFKERSTTRFLDAISSDFELVAFLTLSPAHLMQLETVLRQEMRSCAVPIVTSD FT ASFETVAVIKTALDGMRFHFGYTTLEKGWISMMRHAESCLQESSSSAVNDLQTPIKRVG FT SLLLSGKNRVEGCELSVLNLTARRFRIEYGLNGTYFGEHVAMLRDLKRYIYGTVPKEFL FT WAKTKKHLPFTIPAWITRTPIDCFLFCLRVIPILHRFGVAMSLIYFSCVAALNFPAFMG FT FLFKRQFAKYLAHSFAKHSIYFMFLTIVAILWSFRTFTSQKPKIVLQARSTAEKEKKLM FT MILASVVGITYLFDYDIAEALGNCLHKISRLSSYLLDDHQGIASRMFGASYGLQAGDSA FT EDAVTTIISDLLSVTFKIVDEDASQGTVEDASETTFHSWVGVNTLAGRNMSRPLQYSVN FT KTYALTPQNVQLQARAMADANNCWSMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILI FT CEPTQAATENVCAGVAANLGRAVYGRHEGWSRMGDHCIQVMTYGSALQCHAMDPSFIST FT FDAIFLDEAHDVKEHSLVFESICDTFKSVRKFYVSATPRDGSVCPEAARKYPLHVETSV FT CDSYRKFIAAQGGGDLLDISKHDTALVFLAGRPECIKAANAWNASVTGEKRAFSLSSDN FT FATDFSMLTERLKTHKTIIFTTNIIETGVTLSVDCVVDFGHTMRPCLDLNQKSLRLDRR FT KVTRNERQQRIGPTGRLKDGYAIVCGDVDRAVNVISPDVLYGAALLSFKHNVPFYMNET FT FESSWLKGVTKAQADTMTIFKLPIFLTRDLINADGSVAKEFLDVLKKHQFTTSDIKQAP FT SITAKHIFPTWASYFSLHQALHYGDDKDEIPHELRYARVPFSVTTLSKFDWPALALACE FT KHRASMSNVFAGIEEPARVVTLQTNPANIQASITHLMHMSKNYKTLIENNQHVRQSMMT FT NVMYKWFSSTRITKDLDRNLRRCTDNLAVVEATLSSLRQILAGNTQVHATPHMQSTLED FT IIGLQASDTLTEESLASALGIFVPKSNLFLLLATKGFKLVYVICILLLVNLVYIGLRKW FT REHLKQKGSDEILTNTMPVSEGGEILAEVMKMEPKMRKNIKRDMDEAVESKLCGFTFVF FT PDDDKIGLEGKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDKSEPELRRAY FT EKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNKDMNLVADKLRSFLDTKLVVGH FT HQRKLLEETAQVVIKDTKGTAHKMEISQHDPDCLKQNGSGKVGYPEHRGQFRQEGVAIT FT SDYDLGVEFGTDTDNITLEASTGILLSQVGVDVATRVGRISIGTFNMNCYFYNDWILVP FT GHLQDRSGNVTIQFPDQTVQTTTDALNANGVKRFYGLDVIAIRRPAILRPRTKLVKAFA FT IEEPVIAQMVFVDAQGVRKFTQSDWARKGENSGRWSHKISTVLGMCGCQFWTLERQIDG FT IHVATNYTKKRNEFQPFTQEVVDFINGPGTKIPYCPWVFDRPACGYASHTALFEKPTTL FT TDVIHMQASDGLHNINNAIEGFGSSLRGQLVSPPTESTRQRFDKLFGSGSFELIGQMNK FT GLIDKHVIVGENDDVYDFMREHPTFTWLKDFMNEYAPSVLSYSAYYKDLCKYNRAKHVL FT TYNPEELHYATKGLIKMLEDAGLTQGSVRTPQQVISDIQWNTSAGPSYQGKKRDLCAHL FT SDDEVLHLAEVCRQQFLEGKSTGVWNGSLKAELRTIEKVEPEKTRVFTASPITSLFAMK FT FYVDDFNKKFYATNLKAPHTVGINKFGRGWERLHDKLNRPGWLHGSGDGSRFDSSIDPF FT FFDVVKTIRKHFLPSEHHKAIDLIYDEILNTTICLANGMVIKKNVGTQRQPSTVVDNTL FT VLMTAFLYAYIHKTGDRELALLNERFIFVCNGDDNKFAISPQFDEEFGHDFSPELVELG FT LTYEFDDITSDICENPYMSLTMVKTPFGVGFSLPVERIIAIMQWSKKGGVLHSYLAGIS FT AIYESFNTPKLFKSIYAYLLWLTEEHEAEILAAMTQSSTALPIPSMLDVYRLHYGDDEI FT WLQAADPLTDAQKEAAHTAAADRARLDLADADRRRKVEADRVEAARVKKAADAALKPVN FT LTATRMPTEDDGKLKTPSGARIPSSAADGNWSVPATKQVNAGLTLKIPLNKLKSVPKSV FT MEHNNSVALESELKAWTDAVRTSLGITTDEAWIDALIPFIGWCCNNGTSDKHAENQVMQ FT IDSGKGAVTEMSLSPFIVHARMNGGLRRIMRNYSDETVLLITNNKLVAHWSMKHGASAN FT AKYAFDFFVPRSWMNPQDIEVSKQARLAALGTGTYNTMLTSDTTNLRKTTNHRVLDSDG FT HPELT" FT mat_peptide 172..1155 FT /product="P3 protein" FT mat_peptide 1156..1353 FT /product="7 kDa protein" FT mat_peptide 1354..3330 FT /product="cylindrical inclusion protein" FT mat_peptide 3331..3696 FT /product="14 kDa protein" FT mat_peptide 3697..4257 FT /product="NIa-VPg protein" FT mat_peptide 4258..4929 FT /product="NIa-Pro protease" FT mat_peptide 4930..6510 FT /product="NIb polymerase" FT mat_peptide 6511..7401 FT /product="coat protein" FT 3'UTR 7405..7637 XX SQ Sequence 7637 BP; 2151 A; 1797 C; 1699 G; 1990 T; 0 other; aaaataaaac aaccctaaac caaacaaaac aaaacaaaac aaacacaaac aacacacgct 60 ccccaagctc attacatttg tagagtgatc tttgtcatcc tactctttgt gagcttttcc 120 gcaaatcaac ctgcttgctt ttgcgccccc ttcaccttca ctctcgctcc catggagcaa 180 accctagctc aagctgtgtc acggagaaac aaaacagaca cacctatggc agaagagcgg 240 aaacatttca gccccatgaa tttttccgca aactttgttg ctcctgagct cttttatagt 300 gctaatgtga ggaaaatcaa aaatatcttc aaagagcgca gcacaactcg gtttctggac 360 gcgatttcaa gtgactttga gcttgtcgct tttctcacct tgagtcctgc tcatttaatg 420 caacttgaaa cagttctgcg ccaagagatg cgttcgtgcg ctgtgccaat tgtcacctct 480 gatgctagct ttgaaacagt tgctgtcatc aaaaccgctc tggatggcat gagatttcac 540 tttggataca ctactcttga aaaggggtgg atatctatga tgcgccatgc ggagagttgc 600 ctgcaagaga gctcttcttc ggctgtgaat gatctgcaga cgccaattaa acgtgttgga 660 tcactgctcc tgagtggaaa aaatcgcgta gaaggctgcg aactatctgt cttgaacctc 720 accgcgcgac gtttcaggat cgaatatggg ctaaatggta catactttgg cgaacatgtt 780 gctatgctac gcgacttaaa acgttatatc tatggtaccg taccaaaaga gtttttgtgg 840 gcgaaaacca aaaagcactt accgttcaca atccccgcgt ggatcacgcg tacgcccatc 900 gactgtttct tgttctgtct tcgcgttatc cctatcttac ataggtttgg tgttgccatg 960 tcacttattt acttttcgtg tgttgccgct ttaaattttc ctgcttttat gggtttctta 1020 tttaagcgtc agttcgctaa gtatttagct cactcttttg ctaaacactc catctacttt 1080 atgtttttaa ctatagttgc tattttatgg tctttccgca cttttacttc tcaaaaacca 1140 aaaatagtgc ttcaggctag gagcacagca gaaaaagaga aaaagcttat gatgattcta 1200 gctagtgtcg ttgggatcac ttacctcttc gactacgaca tagcagaagc tcttgggaat 1260 tgtctacata aaataagccg tctgtcctca tatcttctcg acgaccatca aggcattgca 1320 tcacgaatgt ttggagcaag ctacgggctt caggctggcg acagtgctga ggatgcagtc 1380 acaacgataa tcagcgactt actgtctgtt acttttaaaa ttgtggatga agacgcatcg 1440 cagggcaccg tggaggacgc atctgagaca accttccaca gttgggttgg tgttaacaca 1500 cttgcaggcc gcaatatgtc aagaccactc cagtatagcg tcaataaaac gtatgcactc 1560 acacctcaaa atgtccagct ccaagcgcga gctatggcag acgctaacaa ctgctggtca 1620 atggttgttg gtcatacagg atctggaaag tccacatact tacctgtgca gtactccaac 1680 tacttgtcca ctaagagtga taggcgacag caaattctta tctgcgagcc aactcaggct 1740 gccactgaga atgtttgcgc tggcgtcgct gccaatcttg gcagagctgt ttatgggcgc 1800 catgagggtt ggtccagaat gggggatcat tgcattcaag ttatgacgta tggttctgcg 1860 ctccagtgtc acgccatgga ccccagcttc atatcaactt tcgacgcaat ttttcttgat 1920 gaagcacacg acgttaaaga gcactctcta gtctttgaga gcatttgtga cacattcaaa 1980 tccgttcgaa agttctatgt ttcagcaact cccagagatg gcagtgtttg tcctgaagca 2040 gctaggaaat atcctttaca tgttgaaact agcgtttgcg attcgtatcg gaagttcatt 2100 gcagctcaag gcgggggaga tttgttggac atctcaaaac atgacacagc tttagttttt 2160 ctagcgggac ggcccgagtg tattaaagct gctaatgcct ggaacgctag tgtcactggt 2220 gagaagcgcg ccttttcctt gtcgagcgac aactttgcta ctgacttctc aatgctaact 2280 gagaggctca aaacacacaa aaccatcatc ttcaccacga acataattga aacaggtgtt 2340 actctcagcg ttgactgtgt tgtggatttc ggccacacaa tgcgcccatg tttagatctc 2400 aatcaaaaat cattgcgtct tgatcgacgc aaagtgacgc ggaacgaaag acagcagaga 2460 attgggccaa caggtcggct caaagatgga tacgccatag tgtgtggaga tgttgataga 2520 gctgtgaacg tcatctctcc tgatgttctt tatggagctg ctcttctgag ttttaaacac 2580 aatgtgcctt tctacatgaa cgagacattt gagagttcct ggttgaaggg tgttacaaag 2640 gcacaagcag acacaatgac aatcttcaag cttcccatat ttctaacacg agatctcatc 2700 aatgcagatg gctcagttgc taaggagttt ctcgatgtcc taaagaagca tcaattcaca 2760 acaagcgaca taaagcaagc accaagtatc acagccaaac atatcttccc aacttgggct 2820 tcatacttct ctctccacca agcacttcat tatggtgatg acaaggatga gataccacac 2880 gaattgcgat atgcgcgtgt tcccttctcc gtcacaactt tgagcaaatt cgattggcct 2940 gccttagctc ttgcatgtga gaaacataga gcttccatgt caaatgtgtt tgctggcatc 3000 gaggaacctg cacgcgttgt cactctacaa acaaatcctg cgaacatcca agcgagcatc 3060 acacatttaa tgcacatgag taagaactac aaaactctta ttgaaaataa tcagcacgtg 3120 cgccaatcca tgatgacgaa tgtcatgtat aagtggttct cttccactcg catcactaaa 3180 gatcttgata gaaacttgcg aagatgcacg gataaccttg cagttgtcga ggccacgctc 3240 agctcactta gacaaatctt agctggcaac acgcaggttc atgcaacgcc acacatgcag 3300 agcacccttg aggatattat tgggctccaa gctagcgaca cacttacgga agagagctta 3360 gcaagcgcac ttggcatctt tgttccgaag agcaacctct ttctgctgct agctaccaaa 3420 ggttttaaac ttgtgtacgt tatctgcatc ttacttcttg tgaaccttgt ttatattggt 3480 cttcgcaagt ggcgcgaaca tcttaagcag aaaggaagcg atgaaatcct aactaacaca 3540 atgccagtta gcgaaggggg ggaaattctc gccgaggtca tgaaaatgga gcccaaaatg 3600 agaaagaaca tcaagaggga tatggatgaa gccgttgaga gcaaactatg tggtttcacc 3660 tttgtttttc cagatgatga caaaattggt cttgaaggta agggaaacaa gtaccgccct 3720 cgcgaagatg ctcgtctcat gtactccact agggaagacg ccacctttga cgcttggaat 3780 gagaaagcaa aggaaaggcg taagaaggtc accgacaaat ctgagccaga gcttcgcaga 3840 gcctatgaaa agagaccgta cttcaatttc tacgaccttc aaacagatag caacattctg 3900 gaagccattt tctacaccac tgaaggcgat gagtttttcc gaacagcaga tcccaataag 3960 gacatgaact tggttgctga caaactgcgc tcttttctcg acacaaagct tgttgttgga 4020 caccaccagc ggaagctact agaagaaaca gctcaggttg ttatcaaaga tacgaaggga 4080 actgcacaca agatggagat ttcacagcat gatccagact gtctaaagca gaatgggtcc 4140 ggcaaagttg gatatccaga acaccggggg cagtttcggc aggaaggagt tgccatcaca 4200 tcggattacg atcttggagt tgagtttggc accgataccg ataacatcac gcttgaagcc 4260 tctactggga tattattgtc acaagtcggg gtcgacgtcg caactcgagt tggaagaatt 4320 agcattggta ctttcaacat gaactgttac ttctacaacg actggattct ggttccggga 4380 cacctgcaag acagatccgg caacgtaaca attcaatttc ctgatcaaac agtgcaaacc 4440 acaactgatg cactcaacgc aaatggtgtg aaacgattct atggattaga tgtgatagca 4500 attcggcgcc ctgctatctt gagacctcgc accaagttgg tcaaagcttt tgctattgag 4560 gaaccggtta tcgcacaaat ggtctttgtt gacgcacagg gagttcgtaa gtttacacaa 4620 tctgattggg ccagaaaggg ggagaattcc gggcgttggt cgcacaagat ttccactgtt 4680 cttggcatgt gtggatgcca gttttggacg ttggaaagac agattgatgg aatccatgtt 4740 gccacaaact acacaaagaa gcgcaacgag ttccaaccct tcactcagga ggtcgttgat 4800 tttataaatg gacctggaac aaagatcccc tactgcccat gggtattcga tagaccggct 4860 tgtgggtatg catcccacac agctttgttc gagaaaccaa ccacactaac tgacgtcatt 4920 cacatgcaag cttctgatgg tttgcacaac atcaacaatg ccattgaggg ttttgggagc 4980 tcactgaggg gtcagctcgt gtcaccaccc actgaatcca ccaggcaacg tttcgataag 5040 ctgtttggta gtggcagctt tgagctcatt gggcaaatga acaaaggctt aatcgacaag 5100 cacgtgattg ttggggaaaa tgatgatgtt tacgacttca tgcgtgagca cccaacattt 5160 acttggttga aagatttcat gaatgagtat gcgcctagtg ttttgtctta ctctgcttac 5220 tacaaagatc tttgcaagta taatcgtgca aaacacgtgc tcacttacaa cccagaagag 5280 ctccattatg cgacgaaagg actgatcaag atgttggaag acgctggctt gacacaaggc 5340 agtgtgagga caccccaaca agtcatttcg gacattcaat ggaacacttc cgctggaccg 5400 agctatcaag gaaagaaacg cgacctctgt gcccatttga gtgatgatga ggtgctgcat 5460 ctcgctgagg tgtgtcgcca acaatttctc gagggcaagt caaccggagt atggaatggt 5520 tctttgaaag ctgagttgag aaccatcgag aaagttgagc cggagaaaac gcgtgttttc 5580 acagcctctc ccataacaag cttgtttgct atgaaattct acgttgatga ttttaacaag 5640 aagttctacg ctaccaatct gaaagccccc catactgttg gcatcaataa gttcggtagg 5700 ggatgggaaa gattgcatga taagcttaat cgccctggat ggttgcacgg cagtggagat 5760 ggttctaggt tcgacagctc tatcgatcct ttcttcttcg acgttgtgaa aactattcgc 5820 aagcactttc tcccttctga gcatcacaaa gccattgatc tcatatatga tgagattctc 5880 aacacaacca tctgcctagc taatgggatg gtcatcaaga agaatgttgg aacacagcgg 5940 cagcctagca ctgttgtcga taacacactt gtgcttatga ctgcatttct ctacgcatac 6000 attcacaaaa caggagaccg cgaattggcc ttgctaaacg agcgtttcat ctttgtttgc 6060 aatggcgatg acaacaagtt tgccatatct ccacagtttg acgaagagtt tgggcatgat 6120 ttttccccag aacttgttga acttggactc acgtacgaat ttgatgacat cactagcgac 6180 atttgcgaga atccttatat gtccctcacc atggtgaaaa ccccttttgg cgttggtttt 6240 tctcttcccg tggaaagaat catagccatc atgcaatggt ccaagaaagg gggagttctg 6300 cactcatatt tggctggcat ttccgcaatt tacgagtcct tcaacacacc aaaacttttc 6360 aaatcaatct atgcatatct tctttggctc actgaggagc acgaagcaga aattctcgca 6420 gccatgactc aatcctcaac tgctcttccc ataccatcaa tgctcgatgt ttatcggttg 6480 cattatggtg atgatgaaat ttggctacaa gctgctgacc ctctcactga tgcgcaaaaa 6540 gaagctgcac acactgctgc agctgataga gcacgcctcg acctagccga tgctgatcgt 6600 agacgtaaag ttgaggccga ccgtgtggaa gcggcaagag tcaaaaaggc agctgatgct 6660 gcactaaaac cagttaacct cacagcaaca cgcatgccca cagaagatga tggcaaactt 6720 aaaacaccat ctggcgctag aataccatca tcagctgcag atggtaactg gagcgtgcca 6780 gcaacgaagc aagttaacgc tggtttgaca cttaaaattc ccctgaataa gctcaaaagt 6840 gtacccaagt ctgttatgga gcataacaac tcagttgcac tcgaatctga gctaaaagcc 6900 tggactgatg ctgtgcgcac aagtttaggt atcacaactg atgaggcatg gatcgatgcc 6960 ctcattccct tcatcggatg gtgctgcaat aatggcacct cagacaagca tgctgagaat 7020 caagtaatgc aaattgacag cggaaaggga gctgtcacag agatgagtct gtccccattt 7080 attgttcatg ctcgaatgaa tggtggactc cgaaggatca tgcgcaacta cagtgatgaa 7140 accgtcttac tcatcacaaa caacaaacta gttgcacatt ggtcaatgaa gcatggcgct 7200 tctgcaaacg caaaatacgc tttcgatttc ttcgtcccac gatcatggat gaacccacag 7260 gatatcgaag tgtcaaagca agcgcgctta gcagcacttg gaactggaac gtataacacc 7320 atgttaactt ccgacactac caatctgcgt aagacaacca accacagggt tctggactca 7380 gatggacacc cagaactaac ctaaaccatc accccgtgcc ttatacatca cccacccccg 7440 ctcataattc agtctttaaa ttatgttcgt gacgtctttg tatcaggctc ggaacggttc 7500 tatgatccat atgcctttgg cagttacaat gtcagcattc tcattgagga gtatgacagc 7560 gtttgatcag ccgttttcaa tcatccgtcg ttggatggtg gtgcacttag tgcacttacg 7620 agtaccagaa ggtaatg 7637 //