ID AJ131812; SV 1; linear; genomic RNA; STD; VRL; 3000 BP. XX AC AJ131812; XX DT 08-OCT-1999 (Rel. 61, Created) DT 13-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Lily latent virus partial gene for RNA replicase, 25kDa protein, 12kDa DE protein, 32kDa protein and 16kDa protein, genomic RNA, isolate LiLV-KR XX KW 12 kDa protein; 12kDa gene; 16 kDa protein; 16kDa gene; 25 kDa protein; KW 25kDa gene; 32kDa coat protein; 32kDa coat protein gene; rep gene; KW RNA replicase. XX OS Lily latent virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3000 RA Ryu K.H.; RT ; RL Submitted (08-JAN-1999) to the INSDC. RL Ryu K.H., Graduate School of Biotechnology, Korea University, Sungbuk-ku, RL Anam-dong, Seoul 136-701, 136-701, KOREA. XX RN [2] RA Ryu J.H., Park H.W., Park W.M., Lee S.Y., Ryu K.H.; RT "Molecular analysis of the 3'-terminal region of lily latent Carlavirus RT from Lilium lancitoium"; RL J. Plant Pathol. 16:231-235(2000). XX DR MD5; 57caa7071b57f6dd1c7f7489dbb8d899. XX FH Key Location/Qualifiers FH FT source 1..3000 FT /organism="Lily latent virus" FT /isolate="LiLV-KR" FT /mol_type="genomic RNA" FT /db_xref="taxon:92693" FT CDS <1..516 FT /codon_start=1 FT /gene="rep" FT /product="RNA replicase" FT /function="virus replication" FT /db_xref="GOA:Q9QBX0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QBX0" FT /protein_id="CAB57958.1" FT /translation="KLGNFAIMRFSGEASTFLFNTMANMLFTFLRYEIKGDERICFAGD FT DMCSNKKLFISQKHADFLGKLKLKAKVAHTKTPTFCGWNLCPHGIFKKPQLVLERLCIA FT KETNNLVNCIDNYAIEVAFAYKMGEKARERMNEEELDAFYNCVRIIVKNKHLLKSDVRE FT VYEERAER" FT CDS 544..1230 FT /gene="25kDa" FT /product="25kDa protein" FT /db_xref="GOA:Q9QBW9" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q9QBW9" FT /protein_id="CAB57959.1" FT /translation="MDVLLSLLSDFGFERLSSELTLPIVIHSVPGGGKSSLIRALINKD FT KRFAAFTFGKEDCENITGVRIKKVPEVLQQIEFALFDEYLEGAVPTWAFAVFADPLQGG FT PGTVRRAHFIKRKSHRFGKCTAQLLTELGYAVEAEGNDVLQIQGLYDAEPQGTVLFYEP FT EVGELLRQHSVPAYCISEIRGQSFTSVTFVTGESYPVDRALAFQCLTRHCSSLLILCPN FT ATYTTA" FT CDS 1208..1528 FT /gene="12kDa" FT /product="12kDa protein" FT /db_xref="GOA:Q9QBW8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q9QBW8" FT /protein_id="CAB57960.1" FT /translation="MPLTPPPDYTRVYVAFAIGASIALFTGLVTRSTLPTVGDLQHNLP FT HGGRYRDGTKSVEYCGPRKLNYVESTGRWHNQPWLLVIVLVALIIAIGRQSHTCRVCGR FT SH" FT CDS 1747..2622 FT /gene="32kDa coat protein" FT /product="32kDa coat protein" FT /function="viral encapsidation" FT /db_xref="GOA:Q9QBW7" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:Q9QBW7" FT /protein_id="CAB57961.1" FT /translation="MQSQSKPDSGAAAETSDRTRGGRAGPSPDERGASENNAESILEQR FT LTRLIERLNAEKHNSNLRNVAFEIGRPSLEPTSTMRRNPANPYGRFSIDELFKMKVGVV FT SNNMATTEQMAKIASDIAGLGVPTEHVASVILQMVIMCACVSSSVFLDPDGSIEFDNGA FT VPVDSIAAIMKKHAGLRKVCRLYAPIVWNSMLVRNQPPADWQAMGFQYNTRFAAFDTFD FT YVTNQAAIQPVEGIIRRPTSAEVIAHNAHKQLALDRSNRNERFGNLEADYTGGIQGAEI FT VRNHRFANNG" FT CDS 2531..2953 FT /gene="16kDa" FT /product="16kDa protein" FT /db_xref="GOA:Q9QBW6" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:Q9QBW6" FT /protein_id="CAB57962.1" FT /translation="MSASGIWRPITLVEFKVQRSSETTDLQTMDEANKRRVTIVLCLLK FT VFPRDVCNIILRQTSSHVVGFGKSKYARRRRAQQIGRCERCYRIFPPVCGSKCDNKTCR FT PGISINTNVANFIDHGVTEVRPWITPNRNKFYLRLK" XX SQ Sequence 3000 BP; 805 A; 707 C; 750 G; 738 T; 0 other; aagctcggta actttgccat tatgcgtttc tcaggtgaag cgagcacttt tctattcaac 60 actatggcca acatgctctt cacttttttg aggtatgaga tcaagggcga tgaacggatt 120 tgcttcgctg gagatgatat gtgttctaac aaaaaattat tcatctccca gaagcacgct 180 gattttctag gcaagctcaa attgaaagcc aaagtcgctc acactaaaac gccaacattt 240 tgcggttgga atttgtgccc ccacgggata tttaagaaac cgcaattggt gttggagaga 300 ttgtgtatcg ccaaggagac gaataacttg gtcaactgca ttgacaacta tgccattgaa 360 gtcgcatttg cttacaagat gggagagaag gccagagaga gaatgaatga ggaagaactc 420 gacgcatttt acaactgcgt tcgcatcata gttaaaaata aacacctctt gaagtcggat 480 gtccgagagg tgtatgagga gcgagctgaa aggtagctta ggtattagca ataaatattg 540 tatatggatg tgttactaag tttgttgagt gattttggtt ttgagaggtt gagtagcgag 600 ttaaccctac ccatagtaat acatagtgtc ccgggcgggg gtaaatcaag tttaataagg 660 gctttaataa acaaagataa gcgttttgca gcgttcacat tcggcaagga agattgcgag 720 aatattacag gagtcagaat caagaaggtg ccggaggtgt tgcaacaaat tgaatttgca 780 ctctttgacg agtaccttga aggggccgtg ccgacctggg cttttgctgt gttcgctgac 840 ccactccaag ggggacccgg cactgtccgg cgcgcacact ttatcaagcg caagtcccat 900 cgcttcggca agtgcactgc gcagctcttg actgagctgg gttacgctgt tgaagccgag 960 gggaacgacg tgctccaaat tcagggcctt tacgacgctg agcctcaagg tactgtgcta 1020 ttttacgaac cagaagttgg tgagctctta cgccagcact ccgtgcctgc gtactgtatt 1080 agcgagattc gtgggcaatc cttcacaagc gttactttcg tcactggtga atcctatcct 1140 gtcgatcgcg ccttagcttt ccagtgcctg acgcgccatt gctcatctct cttaatactt 1200 tgcccaaatg ccacttacac caccgcctga ttacacacgc gtgtacgtag cattcgccat 1260 cggagcatcc attgcactat tcacaggttt ggtgacacgc agcaccttac ccactgtggg 1320 cgacttgcag cacaacctgc cgcacggagg tcgctaccgc gacggtacta aaagcgtcga 1380 gtactgcggg ccgagaaagc tcaactacgt ggaaagcact gggcgttggc acaaccagcc 1440 ctggcttcta gtgatagtac tcgtggcact aatcatagcc attgggcgcc aaagccacac 1500 ttgcagagtg tgcggtcgat cgcattgatt gtttgcacag acattactgg ggtatatgtt 1560 agttacaagc ttcctgaatt acccaaatcc gaaacctgca ccctttacat cactggcgaa 1620 tcgatacgga ttactggttg caacttgagc ccagctcacc tacgcgcagt gtcacaccta 1680 aaagtgctac aagtgcgcct ttaggtaaac aggctggaag gcgataaaca actacttgaa 1740 ttcaacatgc aatcacagtc aaagccagat tcgggcgctg cagcagaaac ttcagatcgg 1800 actcgaggtg gccgagcggg tccaagtcct gacgaacgag gtgcaagtga aaataacgcg 1860 gagtccatac ttgagcagcg tttgactagg ctaatcgaac gtctgaatgc tgaaaaacac 1920 aactccaatc tgcgcaatgt ggctttcgag atcggtagac ctagcttgga gcccacaagc 1980 acaatgcgac gcaaccccgc caatccttac gggcgatttt ccatcgatga gctgtttaaa 2040 atgaaggtgg gcgtcgtgtc caataacatg gcgacaactg aacaaatggc aaagatagca 2100 tcagacatcg ccggtttggg agttcctacg gagcatgtcg catctgttat acttcagatg 2160 gtcatcatgt gcgcatgcgt cagcagctct gtatttcttg acccggatgg tagcatcgag 2220 tttgataacg gtgctgtgcc cgttgactcg atagcagcta taatgaagaa acatgccggg 2280 ctgcgcaaag tgtgccgttt gtatgcaccc attgtttgga acagcatgct cgtaaggaat 2340 caaccaccag cggattggca ggccatgggc ttccaataca acacgaggtt cgcggcgttc 2400 gatacgttcg actacgttac caaccaggcc gctatccagc cagtggaggg aatcattcgc 2460 cgacccacat ctgccgaggt cattgcgcat aacgcacaca aacaactcgc gctcgacaga 2520 tctaatcgca atgagcgctt cgggaatctg gaggccgatt acactggtgg aattcaaggt 2580 gcagagatcg tccgaaacca ccgatttgca aacaatggat gaagcaaata agcgacgtgt 2640 gacaattgtc ttgtgtttac ttaaggtctt cccgcgtgat gtgtgcaata ttatattaag 2700 gcaaacctct agccacgttg ttggtttcgg caagtcgaag tatgctcgac gtcgtcgcgc 2760 ccagcaaatt ggcaggtgtg agaggtgtta ccgaatattc ccacccgttt gcggttctaa 2820 gtgtgacaat aagacttgca ggccgggtat ctctataaat acgaatgtgg ccaacttcat 2880 tgatcatggc gtaactgagg tgaggccatg gatcacgccc aaccggaaca agttctacct 2940 aagacttaaa taatataagg gtaaaactat aaaaataatt tgtttttaaa tattttagca 3000 //