Dbfetch

Dbfetch

ID   AJ012650; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   AJ012650;
XX
DT   13-NOV-1998 (Rel. 57, Created)
DT   03-JUN-2000 (Rel. 63, Last updated, Version 3)
XX
DE   Papaya ringspot virus CP gene, isolate Chiapas (ChT-11), partial
XX
KW   coat protein; cp gene.
XX
OS   Papaya ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-924
RA   Silva-Rosales L.;
RT   ;
RL   Submitted (05-NOV-1998) to the INSDC.
RL   Silva-Rosales L., Ingenieria Genetica, Cinvestav-IPN, Apdo. Postal 629,
RL   Irapuato, Guanajuato, 36500, MEXICO.
XX
RN   [2]
RX   DOI; 10.1007/s007050050676.
RX   PUBMED; 10893161.
RA   Becerra-Leor E.N., Ruiz-Castro B.S., Noa-Carrazana J.C., Teliz-Ortiz D.,
RA   Silva-Rosales L.;
RT   "Coat protein sequence comparisons of three mexican isolates of papaya
RT   ringspot virus with other geographical isolates reveal a close relationship
RT   to American and Australian isolates";
RL   Arch. Virol. 145:835-843(2000).
XX
DR   MD5; a999584bc7c324fe33b4e35c014b5ac5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..924
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Chiapas (ChT-11)"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12205"
FT   CDS             <1..858
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /function="coat protein"
FT                   /db_xref="GOA:Q9YPX5"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YPX5"
FT                   /protein_id="CAA10099.1"
FT                   /translation="SKNEAVDAGLNEKLKEKEKQKEKEKQKEKERGDASDGNDVSTSTK
FT                   TGERDRDVNVGTNGTFTVPKIKSFTDKMILPKIKGKTVLNLNHLLQYNPRQIDISNTRA
FT                   TQSQFEKWYEGVRSDYGLNDNEMQVMLNGLMVWCVKNGTSPDISGVWVMMDGETQVDYP
FT                   IKPLVEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFY
FT                   EVNSKTPDRAREAHMQMKAAALRNSNRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLL
FT                   GMRN"
XX
SQ   Sequence 924 BP; 310 A; 162 C; 223 G; 229 T; 0 other;
     tccaagaatg aagctgtgga tgctggtttg aatgagaagc tcaaagagaa agaaaaacag        60
     aaagaaaaag aaaaacaaaa agagaaagaa agaggcgatg ctagtgacgg aaatgatgtg       120
     tcgactagca caaaaactgg agagagggat agagatgtca acgttgggac caatggaact       180
     ttcactgttc caaaaattaa atcatttact gataagatga ttctaccaaa aattaagggg       240
     aagactgtcc ttaatttaaa tcatcttctc cagtataatc cgcgacaaat cgacatctct       300
     aacactcgtg ccactcagtc acaatttgag aagtggtatg agggagtgag gagtgattat       360
     ggccttaatg ataatgaaat gcaagtgatg ctaaatggtt tgatggtttg gtgtgtcaag       420
     aatggtacat ctccggacat atctggtgtc tgggttatga tggatgggga aactcaagtt       480
     gattatccca tcaagccttt agttgagcat gctactccgt catttaggca aattatggct       540
     cactttagta acgcggcaga agcatatatt gcgaagagaa atgctactga gaggtacatg       600
     ccgcgatatg gaatcaaaag aaatttgact gacattagcc ttgctagata cgctttcgat       660
     ttttatgagg tgaattcaaa aacacctgat agagctcgcg aagctcacat gcagatgaaa       720
     gctgcagcgc tgcgaaattc taatcgcaga atgtttggta tggatggcag tgttagtaac       780
     aaggaagaaa acacggagag acacacagtg gaagatgtca atagagacat gcactctctc       840
     ctgggtatgc gcaactaaat acctgcgctt ggatccttgc tgcagtcatc cacagcttca       900
     ttctaggacc atgaagccga attc                                              924
//