ID AJ012005; SV 1; linear; genomic RNA; STD; VRL; 7147 BP. XX AC AJ012005; XX DT 03-MAY-1999 (Rel. 59, Created) DT 17-JUN-2004 (Rel. 80, Last updated, Version 2) XX DE Chinese wheat mosaic virus segment RNA1, complete sequence XX KW movement protein; replicase; replicase readthrough. XX OS Chinese wheat mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-7147 RA Diao A.; RT ; RL Submitted (15-OCT-1998) to the INSDC. RL Diao A., Crop and Disease Management Department, IACR-Rothamsted, RL Harpenden, Herts AL5 2JQ, UK. XX RN [2] RX PUBMED; 10355760. RA Diao A., Chen J., Ye R., Zheng T., Yu S., Antoniw J.F., Adams M.J.; RT "Complete sequence and genome properties of Chinese wheat mosaic virus, a RT new furovirus from China"; RL J. Gen. Virol. 80:1141-1145(1999). XX DR MD5; 03f574cdd42b341df459a8ff6e54f26f. DR RFAM; RF01106; SBWMV1_UPD-PKb. XX FH Key Location/Qualifiers FH FT source 1..7147 FT /organism="Chinese wheat mosaic virus" FT /segment="RNA1" FT /isolate="Yantai, China" FT /mol_type="genomic RNA" FT /note="Furovirus" FT /db_xref="taxon:83544" FT 5'UTR 1..101 FT CDS 102..5678 FT /transl_except=(pos:4152..4154,aa:OTHER) FT /product="replicase readthrough" FT /note="ORF2" FT /note="readthrough portion includes RNA-dependent RNA FT polymerase motifs" FT /db_xref="GOA:Q9WJD7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9WJD7" FT /protein_id="CAB41769.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVSWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEFTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSKKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT VTDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSES FT SNNEEQINGDYRDSRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDAQSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVRVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVDVVKKMDQKKLGLVEKVKASAVAVVELSKTKPVTGNSCAVDLWADFEKNLDDDD FT EPGCGISVVTKGKEICQDNVGPVLLCGSSSCSSVSEVEKETDVVSVTDSGNSPATCCGG FT MVLDKSVSIAGNDVSVELPVTATTVATVETGTADGVIASTDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGLISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNCGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERSK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLETTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDKXRFGSKYESILICDREVRVPDVGTPAILQDFYDRVFPGNSTMDSHFDGYEVS FT TSDISIELENCTVQPNKNVRVWQDKRGLVPVMRTAMPPKRQNLPVEAMLALKKRNMAAP FT KLQEAVNEFEVIERTINRAKEIFFNVELIDDSELSTRESNLRWWGRQSTTARAQMKKEM FT RVLHEIDLCFYSYNIKGDEKPKMDRSPQHEYGALQTVVFPDKIVNALFGPVMKEINERI FT RMALKPHVVYNSRMNADELNRTVEFLDPDEEYNAFEIDFSKFDKSKTSLHIRAVIELYK FT LFGLNDLIALLWEKSQSRTKIRDFVYGITAYLLYQQKSGNCDTYGSNTWSAALALLESM FT PLEKAKFMIFGGDDSLILFPKQQVVEDPCRRLASLWNFDCKLFDFKHNMFCGKFLLKIG FT DRFKFAPDPMKLITKLGRKDIADGRLLSEIFVSIGDNFRSYRDYRILEQLSLAVRERYK FT TDEDPTATLITLKKYIFDFKLWGSLFNYSGEFVESRVDRNFEW" FT CDS 102..4154 FT /product="replicase" FT /note="ORF1" FT /note="contains methyl transferase and helicase domains" FT /db_xref="GOA:Q9WIE3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9WIE3" FT /protein_id="CAB41770.1" FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY FT LDAMERQKTKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHIKRNDGRRVHCCCPTIDIRDSARKTVSWASIEKYLDEK FT DEIPTEVGERIKRVQADEIKIYENLKNKRAQPEDLDGKWYCGNKFEECVFRAERAYAMA FT IHSIYDIDLMDLANALEEKRIKIMSGTFLFSVDLLLGKKSGSLPTMDGFFEVEGDYVKY FT GFKNDTNPGYKHKLSQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN FT GVVADESFKCIPIDNKSEVVFPIFEVDKQTDSLIFSEVLLSKDFVQRAIEFTGRLKPNQ FT LTPDNVNTYLTSTNNTIIIGGSSKKNTTKVDATLIQQITTTLVVWTELMNLRQKRVLEK FT LRLQMKDDVDFKSLAHTAFLKVFGKVSYYQRALRCFANWLSYVHGTDAIQFHDVPLYAE FT VTDRVKLWKTHAPNQGFVLDMEDLDVKIKMHEVSEREKRDVSRCIVSGKLGELQIHSES FT SNNEEQINGDYRDSRRRTTFEDLLEGEVATNFLDDWCEKNDHFNFSRDDAQSKYAWGLK FT LLKGIWEFLLPPMDFAPVYVDDEQARLRMVRVNERRNTSDTGADGDVAACEVAADFSKA FT MDTLVDVVKKMDQKKLGLVEKVKASAVAVVELSKTKPVTGNSCAVDLWADFEKNLDDDD FT EPGCGISVVTKGKEICQDNVGPVLLCGSSSCSSVSEVEKETDVVSVTDSGNSPATCCGG FT MVLDKSVSIAGNDVSVELPVTATTVATVETGTADGVIASTDESAFSDVNDKSWGSVAEE FT ESDDTFYSCSGLISDKVKKSNLPKRPDFSKFPTVQQKAKHEAMWYLQCKIVSDRTTLRS FT IIDDHLRGMFHNGTCELPKDSAFLDYTADNCGTWMYGKPSRFGHSYGVGFSLDTRQRVS FT KCELVKLMWNHDSRGQVNQKPVNTRAFQYLLLSELSFMMNEMIIYRNLQQVMRKRERSK FT QARITLRDGVPGCGKSTWILNNANPTKDMILSVGKEATEDLKEKFMKKHRCVESDLKRI FT RTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRV FT ESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPR FT DVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVV FT RLETTENEIYPGGRKGQPYEIVATTRHRRSLVYYTAIEDRLFEDISDMQDVMESKLMKS FT LCPEFDK" FT misc_feature 5679..5739 FT /note="untranslated region" FT CDS 5740..6729 FT /product="movement protein" FT /note="ORF3" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9WIE4" FT /protein_id="CAB41771.1" FT /translation="MTSKDVKGESYESVYNKMLDMQTEAVGANELRLNRQRSFNVENRY FT VEKALIQPGIVTKMADAWTSFTKTNKEEGMPYNLSFSCVLINVIPTVPKGYAGTVEVSL FT LDSGLSPLENIIPDQTQMMELGAGPHVMCFFMHYSIPLNDKDRSIKLAFKIDAEMANKG FT MSVMNVYTYWTQRQGAQSSYSEPQRSTCSKLLLGYDKSLKMKTRGDVRRFVGRSLTLHN FT LEQSVPQMLPANINVLKENVPLYRKESIMDLTKEEREKNAKLEELRKTRAIQTERNVEE FT MKKRQMELLKEARRKTAEDSVAAADKRKYQIGSSSGQPDITFGSFNKV" FT 3'UTR 6730..7147 XX SQ Sequence 7147 BP; 2092 A; 1228 C; 1847 G; 1980 T; 0 other; gtatttcttt ctctctacgt cgttagacag tgtagagtgt ttggaatact tgttgcaata 60 caaaggcacg cttcggcgat aaatcctttg tttgtaacaa aatgccgatc gatagcagtt 120 cgatacttgg tattattagt gaagaggatg tcattagggc cgccattagt actagtgcga 180 caaaatttgg ttcgcagttg catagtactg tgtgcgatca tgttaaagag acgtacttgg 240 acgctatgga aagacaaaaa acaaaaaaga agatagatgt gaggcgcgac ttgtcacagg 300 aacagcttca acttctaaat gacctttatc cggagagaca cattgtgtca agcaactgtg 360 aaagaggtac gcacagcttt gcagcggctt cgaggaaaat cgagactgat ttgttgttga 420 gtcgtattcc taaaaaatcg tgggtctacg atattggggg caactgggcc acgcacatca 480 agcgcaatga tgggcgtagg gtgcattgtt gttgccctac tattgacata agagattctg 540 cgaggaagac tgttagttgg gcgtctatag aaaaatattt ggatgagaag gacgagatac 600 ccaccgaagt cggtgagcgt attaagcgtg tgcaggctga tgaaattaag atttatgaga 660 atctgaagaa taaaagggct cagcctgaag atttagatgg taagtggtac tgtggaaaca 720 agtttgagga gtgtgtgttc agagcagaga gggcttatgc gatggctatc catagcattt 780 atgatattga tctcatggat ctggccaatg ctttagagga aaaaagaata aagatcatga 840 gtggcacgtt cctgttttcg gttgacctgt tacttgggaa aaagagcgga tcactaccga 900 ccatggatgg tttctttgag gtagaaggtg actacgtaaa gtatggtttc aaaaatgata 960 caaacccagg ttataaacat aagctcagtc agctgatgaa gtatctgacg aagacttttg 1020 tcgtcgcgaa agggggaaca atttactacc tagagcttac tgaacagcga ggtgatgtga 1080 tgttcttcac aatgacggat gcgacggaag cgaggatgaa cggtgttgtg gctgacgagt 1140 ctttcaagtg cataccaatt gataataagt ctgaggttgt atttcccata ttcgaggtgg 1200 ataagcagac tgattcgttg attttttccg aggtgttgtt gtcgaaggat ttcgttcaaa 1260 gggctatcga attcacagga aggcttaaac cgaatcaact cactccggat aatgtgaata 1320 cctatttgac ttccaccaac aacactatca ttattggtgg ttcatcaaaa aagaatacta 1380 cgaaagtcga tgctacgttg attcagcaaa ttactaccac tctggtggtt tggacggagc 1440 ttatgaattt gcgccaaaag agagtgttgg agaagttaag gttgcagatg aaagacgatg 1500 tggatttcaa gtcgttggcg catactgctt ttttgaaggt gttcggtaaa gtgagctatt 1560 atcagagagc gctgcgttgt ttcgctaatt ggctttcgta cgtgcatggc actgacgcca 1620 ttcaatttca cgatgtccct ctgtatgcgg aagtcacaga cagagtgaag ttgtggaaga 1680 cacacgcccc aaatcagggc tttgtgctcg acatggaaga cttggatgta aagatcaaga 1740 tgcatgaggt gtccgaaaga gaaaagagag atgttagtcg gtgcatagtg tctgggaagt 1800 tgggggagtt acagatccat tctgaatctt ctaataatga agaacaaatc aacggtgatt 1860 atcgtgacag tcggagacgt actacttttg aagacctact ggagggtgaa gtggctacga 1920 attttcttga tgattggtgt gagaagaatg atcatttcaa tttttcgcgt gatgacgccc 1980 agtctaaata tgcttggggt ttgaaattac tgaaaggtat ttgggagttt ttactcccgc 2040 ctatggattt cgcgcccgtt tatgtcgatg atgagcaagc aagactaagg atggtccgtg 2100 tgaatgaaag gagaaatact tctgacactg gtgctgacgg agacgtcgca gcttgtgaag 2160 ttgcagcaga tttttcgaaa gcgatggaca cgttggttga cgtggtgaag aagatggatc 2220 agaagaagtt gggattagtt gagaaggtga aagcatctgc ggttgctgtt gtcgaactga 2280 gtaagactaa acctgttact ggtaacagct gcgcggtgga tctctgggct gattttgaga 2340 agaatttgga cgacgatgat gaacccggtt gtggtatttc cgtagtgact aaaggtaaag 2400 aaatatgtca agataatgtc ggaccagtgc ttttgtgtgg tagttcttca tgctcctctg 2460 ttagtgaggt ggagaaagaa actgatgtgg ttagtgtgac tgattctggg aatagtcccg 2520 ccacatgctg cggaggaatg gttcttgata agtcggtaag tattgctggt aacgatgttt 2580 cggtcgaact acctgtcact gctacaactg tcgcgacagt tgagacaggg actgcggacg 2640 gtgttatcgc tagtacagac gagtcagcct ttagtgacgt taacgacaag tcgtggggct 2700 cggtcgctga ggaagaaagt gatgacactt tttattcatg ctctggtctg atttcagata 2760 aagtgaagaa aagtaatttg ccaaagaggc cagatttctc gaaatttcct actgtgcaac 2820 agaaggcgaa acacgaggcg atgtggtatc tgcaatgcaa gatcgtttct gataggacca 2880 ctctgaggag tattattgat gaccatctgc ggggaatgtt tcacaatgga acttgtgaac 2940 tgcctaaaga ttcagctttt ttggactaca ctgccgataa ctgcgggacc tggatgtacg 3000 gaaaaccgtc acgttttggt cacagttatg gagttggttt ttcactggat acgaggcaga 3060 gagtaagtaa gtgtgaactt gtgaagttga tgtggaatca tgacagccgt ggtcaggtaa 3120 atcagaaacc agtgaatacg agagctttcc agtatttact gcttagtgag ctctccttta 3180 tgatgaatga gatgataata taccgtaacc ttcagcaggt gatgcgtaaa agggagagga 3240 gtaagcaggc acgtattaca ttgagagatg gagttcccgg ttgcggaaaa tctacgtgga 3300 ttctgaacaa tgcaaatccc acaaaagata tgattctatc ggtgggaaaa gaggcaactg 3360 aggatttaaa agagaaattc atgaaaaaac acaggtgtgt agaatccgac ttgaagagga 3420 taagaactgt ggattcattt cttatgcacg attatgacaa gtacagggca gcaaccgtgc 3480 actttgatga agcacttatg gcgcacgctg gtatggtgta tttttgtgct gatatacttg 3540 gagctaagaa ggtcatttgt cagggtgatt ctcaacaaat accttttatt aatcgcgttg 3600 aatctatcac attgcagtac tcaaagcttg taattgacga gactgagcat gtgcgactaa 3660 cgtatagatc tcctgttgac gtggctcact atctcaccaa aaaatcgtgg tacagtggag 3720 gaagggttac tacaaagaac cctgtgatga gatctatgaa aactgtagga ccgagagacg 3780 tcaaacctat gacgtcagtt cactgtgttc cttattttaa agacgcgcag tacttgacgt 3840 ttacgcaatc tgaaaaaact gatttgtaca aggcgctgag gaataaaggt ccagtcacag 3900 tgaataccgt gcatgagact caaggaaaaa cctttgacga tgtcattgtg gtaaggttag 3960 aaactactga aaatgagatt tacccaggtg gtaggaaagg tcaaccttac gaaattgtgg 4020 caacaactag acatcgccga tcattggttt attatactgc tattgaagac aggctttttg 4080 aagatattag tgacatgcag gatgtcatgg aaagcaaact catgaagagt ttgtgtcctg 4140 aattcgacaa atgacggttt gggtcgaaat atgagtccat cttaatatgt gatagagagg 4200 taagggtacc cgacgtagga acacctgcaa ttttgcagga cttctacgac agggtgtttc 4260 ctggaaattc aacgatggat tcacatttcg acgggtatga agtttctact tctgacataa 4320 gcatcgaatt ggagaactgc acagtacaac ccaacaaaaa cgttagggtg tggcaagaca 4380 agaggggttt ggtgccggtg atgcggactg ctatgccgcc taaacgacag aatcttccgg 4440 ttgaggccat gttagcgttg aaaaaacgga atatggcagc accgaaattg caagaggcgg 4500 tcaatgaatt tgaggtgata gagaggacta taaatcgggc caaagagatc tttttcaatg 4560 tggaattgat cgacgacagt gaactttcta ctagagaatc caacttgcgt tggtggggaa 4620 gacaatctac gaccgcgagg gcgcagatga aaaaagaaat gcgggtattg catgagatag 4680 acctgtgttt ttacagttac aacatcaaag gtgatgagaa acctaagatg gacagatcac 4740 cccagcacga atacggagcg ttacagacgg tggtgtttcc cgataaaatt gtaaacgctc 4800 ttttcggtcc ggtcatgaag gaaatcaatg agcgtatcag aatggctttg aaaccgcatg 4860 ttgtatacaa ttctagaatg aatgccgacg agctcaaccg tacagttgag ttcttagatc 4920 cagatgaaga atacaatgcg tttgaaatcg atttttcaaa attcgacaaa tcaaaaacgt 4980 cattgcacat tcgagcggtt atcgagctat acaagctttt cggtctgaat gatttgatcg 5040 cccttctgtg ggagaaatcg caatctcgga ctaagataag ggactttgta tatggtatta 5100 ccgcatattt gctttatcag cagaaatccg gtaattgcga cacttatggt tcaaacacat 5160 ggtccgcggc gttggcgttg ttggaatcaa tgccattgga aaaagcaaag tttatgatct 5220 ttggaggtga cgactcattg atcctttttc caaaacaaca ggttgtagaa gatccctgca 5280 ggaggcttgc ctcactgtgg aacttcgact gcaaactgtt tgattttaag cataacatgt 5340 tctgtgggaa attcttgctt aagatcgggg acaggttcaa atttgcacct gaccctatga 5400 agttgattac gaaactgggt cgtaaggata ttgctgatgg gagattgctg tccgagattt 5460 ttgtgtctat tggagataat ttccggtctt accgggatta caggatactc gaacaacttt 5520 ctttggccgt acgggaaagg tacaagactg atgaagatcc gacggctacg ttgattactt 5580 tgaagaagta catcttcgat tttaagcttt ggggtagttt gtttaattat agtggtgagt 5640 ttgtggagag tagagtagat aggaactttg aatggtaatt cgctgtttct cgttgttttt 5700 atctattgtt cacttctctt tttctcttta ctgctaatca tgacttccaa agatgtcaaa 5760 ggtgaatcat acgagtcggt gtacaacaag atgttggata tgcaaactga agcggttggt 5820 gcaaatgagt tgcgtctgaa caggcagagg agtttcaatg ttgaaaatcg gtatgtcgag 5880 aaagcactca ttcaaccggg gattgttaca aagatggctg atgcttggac gagttttacg 5940 aaaacaaaca aggaggaagg gatgccatac aacttgtctt ttagctgcgt gttaataaac 6000 gttataccaa cagtacctaa gggttacgcg ggtaccgtgg aagtatcact gctcgattcg 6060 ggcctgtcac cgcttgagaa tatcattccg gatcagacgc aaatgatgga gttgggcgcg 6120 ggaccacatg tgatgtgttt ctttatgcat tacagcatac ctttaaatga caaggatcgt 6180 tcaatcaagt tggctttcaa aattgatgca gagatggcta acaaaggtat gagtgtgatg 6240 aacgtctaca cttattggac gcaaagacag ggggctcaat cttcgtattc tgaacctcag 6300 aggtcaactt gttcgaagtt gcttttaggt tatgataaga gtttgaagat gaagacaaga 6360 ggagatgtcc gacgttttgt tggtcgttca cttactttgc acaatttgga gcaatctgtg 6420 ccgcagatgc ttcctgctaa tattaatgtg cttaaagaga atgtcccttt gtatcggaaa 6480 gagagtataa tggatctcac taaagaggaa agggagaaaa atgctaagtt ggaggaactt 6540 agaaaaactc gtgctattca gacagaacgt aatgttgaag agatgaagaa gaggcagatg 6600 gagctgttga aagaggctcg tcgtaagacg gctgaagatt cggtcgctgc tgctgacaag 6660 cgtaagtacc aaattggttc atctagtgga caaccagaca tcacttttgg ctcttttaat 6720 aaggtgtgat aagtgtgtat actatacata tatacattat tgtatatggc ttgtaagttt 6780 gctactatat ttgtactttg tattattaca ttgtaaaaat agtctaactt gtcagactga 6840 gacaagtcgt tttcagtacg ataactggaa ccgcttgata agcgggttat aaaacattca 6900 aacctatttg agcaggttgc gctcaaacgt ggtcattacg ataaatgact ctgtttacca 6960 aacagaagta aattggttac gtagtacagt gcgttaaact gtacgactat cttctagtcc 7020 ctattgatgt aattgaaaaa agatcaatat tgggcaatga cgaagagcga ctgggcgtcg 7080 cggctgctaa gacacagcag ttaagagggg ttcaattccc ccccgaaccg gagggttatc 7140 cggccca 7147 //