ID   AJ010697; SV 1; linear; genomic RNA; STD; VRL; 1313 BP.
XX
AC   AJ010697;
XX
DT   02-OCT-1998 (Rel. 57, Created)
DT   05-OCT-1998 (Rel. 57, Last updated, Version 2)
XX
DE   Carnation latent virus RNA, 3' terminal region
XX
KW   coat protein; nucleic acid binding protein; zinc finger protein.
XX
OS   Carnation latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1313
RA   Meehan B.M.;
RT   ;
RL   Submitted (02-OCT-1998) to the INSDC.
RL   Dept. of Mycology and Plant Pathology, The Queen's University of Belfast,
RL   Belfast, BT7 1NN, UK
XX
RN   [2]
RX   PUBMED; 1713905.
RA   Meehan B.M., Mills P.R.;
RT   "Nucleotide sequence of the 3'-terminal region of carnation latent virus";
RL   Intervirology 32(4):262-267(1991).
XX
DR   MD5; f3219ed25809606559d96bb881fdd117.
DR   EuropePMC; PMC3689765; 23805334.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1313
FT                   /organism="Carnation latent virus"
FT                   /lab_host="Dianthus barbatus"
FT                   /mol_type="genomic RNA"
FT                   /clone="pCarLV10"
FT                   /db_xref="taxon:12164"
FT   CDS             28..948
FT                   /product="coat protein"
FT                   /db_xref="GOA:O92527"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O92527"
FT                   /protein_id="CAA09306.1"
FT                   /translation="MPEKRLEEDVGSQGQTGPNNPPQQHQGEQSAVSGMVSVNEVDLRN
FT                   LQNRVEEAEKFMQRFQKLKEFNSQNLTAGELKNGGFESGRPPAKISEHLRGSTANVFTR
FT                   PSLDALQMMDFKPESNMIVTAEELAAITAKLEGLGVPTERSAPICWAVARYCANTSTSP
FT                   YTDPKGVFEFPGGAITRDAVFAVIREVTTLRAFCRAFAPITWNQMLFAKSPPENWQAKG
FT                   YTYETRYAAFDVFDFVQNPAAIQPLEGLLRIPTAEEKIAHATNKRLALDRNRRNARFSS
FT                   TDSLVTGGMYGKDIKTNFNGSNNSD"
FT   CDS             948..1256
FT                   /product="11.6 kD protein"
FT                   /note="putative nucleic-acid binding protein"
FT                   /db_xref="GOA:O92528"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:O92528"
FT                   /protein_id="CAA09307.1"
FT                   /translation="MRERKLRKTLEDLFKRFASGQHGHSDCVNIIIAKIKSGQPGESKY
FT                   AQATYELSQYARCPRCARVSPGFYFTTRCDGKTCSLVYQPDADLLEFIGIDLCVRSK"
FT   polyA_site      1312
XX
SQ   Sequence 1313 BP; 393 A; 280 C; 318 G; 322 T; 0 other;
     gtttgaaata atatacatac atacataatg cctgaaaaga gactcgagga agatgtggga        60
     tcgcaagggc aaaccggccc caacaatcca ccacaacaac atcaggggga acaatcggct       120
     gtgtcaggga tggtttcagt caatgaggtc gatcttagga atcttcaaaa ccgcgtggag       180
     gaggctgaga aattcatgca gcgctttcag aagctaaagg aatttaactc ccaaaacctt       240
     acagctggcg aattgaaaaa tggtggcttt gaaagcggta gacctccagc caaaatttct       300
     gagcatttac gtggctcaac tgcgaatgtc tttacaaggc cttctctaga tgcgctacag       360
     atgatggatt tcaaaccgga gtcaaacatg attgtaacag ctgaagaact tgcagccata       420
     acagccaagt tggaaggtct gggtgtgccc actgagcgta gtgcaccaat ctgttgggct       480
     gtcgcacgtt actgtgcaaa cacaagcacc tcaccctaca ccgacccaaa aggggtgttt       540
     gaatttcctg ggggtgctat aactagagat gcagtcttcg ctgtcataag agaagtcaca       600
     actctacgag ccttctgcag ggcttttgcg cccatcactt ggaaccagat gctgttcgcc       660
     aaatccccac ctgagaattg gcaagcgaag ggctacacct atgaaacaag gtatgccgct       720
     tttgatgtat ttgacttcgt gcaaaaccct gcggctatac aacctctaga gggtctgctg       780
     aggattccta cagccgagga gaaaatagca cacgctacaa acaaaagact ggcccttgat       840
     aggaaccgta gaaatgcaag attctctagc actgatagcc tcgtgacagg cgggatgtat       900
     ggtaaggata ttaagacgaa ctttaacggt tcgaacaatt cagactaatg cgtgagagaa       960
     agttaaggaa gacgcttgag gacctgttca agcgtttcgc atctggtcaa catgggcact      1020
     ctgattgtgt taatattata atagcaaaaa taaagagtgg tcaacctggg gagagtaaat      1080
     acgcacaggc gacgtatgag ctaagtcaat atgcccgatg tccaaggtgc gcacgcgtgt      1140
     ctcctgggtt ttacttcacc actcgttgtg atggtaagac atgcagcctg gtttatcagc      1200
     ccgacgcaga tttgttagaa tttattggga ttgacttgtg tgtaagatct aagtaatata      1260
     taagcactta agtataaaaa gcaaatgcgt tttaaatatt tttccgtatt tta             1313
//