ID AJ009833; SV 1; linear; genomic RNA; STD; VRL; 3216 BP. XX AC AJ009833; XX DT 31-OCT-1998 (Rel. 57, Created) DT 25-MAR-1999 (Rel. 59, Last updated, Version 2) XX DE Tobacco rattle virus (TRV), complete RNA2 sequence of isolate TpO1 XX KW 2B gene; 2b, 29K protein; 2C gene; 2c, 18K protein; 9K protein; KW coat protein gene; k gene; viral coat protein. XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3216 RA MacFarlane S.A.; RT ; RL Submitted (30-JUL-1998) to the INSDC. RL MacFarlane S.A., Virology, Scottish Crop Research Institute, Invergowrie, RL Dundee, DD2 5DA, SCOTLAND. XX RN [2] RX PUBMED; 9934712. RA MacFarlane S.A., Vassilakos N., Brown D.J.F.; RT "Similarities in the genome organization of tobacco rattle virus and pea RT early-browning virus isolates that are transmitted by the same vector RT nematode"; RL J. Gen. Virol. 80:273-276(1999). XX DR MD5; b1dfafe6ab380a2612b89d9910d5276c. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3216 FT /organism="Tobacco rattle virus" FT /isolate="TpO1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 475..1065 FT /gene="coat protein gene" FT /product="viral coat protein" FT /db_xref="GOA:Q9YMD2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9YMD2" FT /protein_id="CAA08870.1" FT /translation="MGSYGDSFEGKILDDLSQPWCEKHNWADVLRRLSKIKFALQNDRD FT MIPGILEDLTTELPVDEVTRFPLMKIYYSLSKEVMIAIETIHSASSFKRRAEEKNNVNP FT RQRFEADTATTLVTPGGGAIRPAGSGDSALTEDAFSHGKLDDASTAFHKSLAMLKGERL FT KAYTQRGFEKEYGLKWAGSAPATSSGGGKGPVV" FT CDS 1111..1356 FT /gene="k gene" FT /product="9K protein" FT /db_xref="UniProtKB/TrEMBL:Q9YMD1" FT /protein_id="CAA08871.1" FT /translation="MLGTNDGENVQCVQLGGESARGQYTSNHVDLFEVRVLFPEVRLYW FT ARDRTEKLQFQHSRPIEPFEWCLVGGCICVANVLVF" FT CDS 1388..2161 FT /gene="2b gene" FT /product="2b, 29K protein" FT /db_xref="GOA:Q9YMD0" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:Q9YMD0" FT /protein_id="CAA08872.1" FT /translation="MTTDRVTLWPNDQLFLSDTYQLVWFDETRDKVEHKHFSYQASNDL FT LSIPKSFLSFVDNRLPMCINHKGAVYIKVGTGGDAYYQKFGDLEVSKFNDDFLPQDAHF FT VFNNVVIGDNDDVSKTEELASLKKKNEVLQSEVVTSREHSDAIISKLKLDLVQSKMNYS FT VKVEPGLVLGYGKAGGELTRTIVSIVKTNLVVLGERYVRDSHAWKQMGVLHNIKSGSRY FT VAYTFVEESGVMYITYSIGKLRDMSVEELLSSVAF" FT CDS 2337..2804 FT /gene="2c gene" FT /product="2c, 18K protein" FT /db_xref="UniProtKB/TrEMBL:Q9YMC9" FT /protein_id="CAA08873.1" FT /translation="MISWTLGWFRLYLPQGGDGERTLRISWRGTNVYMFGEQVELPTCW FT DNNSWRGSAYRVIRMNHIDYHVRVFYTWLGAMHHCYVWIYYPAGGGISHYRRRLVVDNR FT NNNYAAGEEFPFNNVNLLTGVVTQGDLLHGVSLNAGTHLYTFTPTLELRWG" XX SQ Sequence 3216 BP; 891 A; 565 C; 794 G; 966 T; 0 other; ataaaacatt gcaccattgg tgttgccctg gctggggtat gtctttgaac acagtagagt 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacaca gcttttatcc 120 ctcttcacga cgaggttttt gtcgatgtat ttttagttta gctagatcag taaataaact 180 cttgtcttct catacaagga aaacctgaga cgtgttaact acgaaagtgt ctattttaaa 240 actgtggaaa cgctaatcgg cggttctgtg gaatccaaaa acgccaaagt cttcatgatt 300 ttgtgtgcaa gagtgtgtat aaagctctgg tttgaaaatt gaacttgtcc ttcttacgga 360 tcaaaaccat gtcaagaatt gtcgtatatg agttgaacaa gtgttcaact acagcatatt 420 aataatcttt acactgtcta cagtgcaacc tcaggtagct gcattcattg tcagatgggt 480 tcgtacggtg attcttttga agggaaaatc ttggatgatt tgtctcaacc atggtgtgag 540 aagcacaatt gggccgatgt cttgagaaga ctgtcgaaga tcaagtttgc tttgcaaaat 600 gatcgcgaca tgattccagg gattttggaa gatctgacta ccgaacttcc cgttgatgaa 660 gttacgcgat ttcctttgat gaaaatttat tactcactct cgaaagaagt catgattgct 720 attgaaacaa ttcactctgc ttcgtcgttt aaaaggcgtg ctgaagaaaa gaacaatgtg 780 aatccccgtc aaagattcga agctgatact gcgaccactc tcgtgactcc gggtggtggg 840 gctattcgtc ctgctggttc cggtgattcg gctttgactg aagatgcatt ttcacatggt 900 aaacttgatg acgcaagtac ggcttttcac aagtctctag cgatgttgaa aggtgaaaga 960 ttgaaggcgt atacacaacg tggttttgag aaggaatatg gactgaagtg ggcaggaagt 1020 gctccggcga cctcctctgg agggggtaag ggaccggtcg tgtgactcat tgcgaagcca 1080 tcgaggaagg ttctcagagc gatcggaagt atgttaggta ctaacgatgg tgagaacgtt 1140 caatgtgtac aactcggtgg tgagagtgcg agaggacagt acacttctaa tcatgttgat 1200 ttgtttgaag tgagagtgct tttcccggaa gtacggcttt attgggctcg tgataggacg 1260 gagaagttac aatttcaaca ttccagaccc attgaaccat tcgagtggtg tttagttggt 1320 ggatgcattt gtgtagccaa tgtgttagtc ttttgaaaca taaccgtcag gttttgttca 1380 gcatataatg actacagatc gggttacatt gtggccaaac gaccaactgt ttctttccga 1440 tacctatcag ttagtctggt tcgatgagac acgtgacaag gtggaacaca agcatttttc 1500 gtaccaggct tctaatgatt tgctgagcat accaaaatct tttctaagtt ttgttgataa 1560 cagattacct atgtgtataa atcacaaggg tgctgtatac atcaaagttg gaactggtgg 1620 cgatgcttat tatcagaagt tcggtgatct ggaagtgagt aaattcaacg acgattttct 1680 acctcaggac gctcactttg tgtttaacaa cgttgttatt ggagacaatg atgatgttag 1740 taaaactgaa gagttagcct cccttaagaa gaaaaacgaa gttctacaaa gtgaagttgt 1800 tacgagtaga gagcactccg acgcgattat cagtaaactg aaattagacc tagtccaatc 1860 taagatgaat tattccgtca aagttgagcc gggtctggtt ctcggttacg gtaaagctgg 1920 cggagagtta actcggacaa tcgtgtccat tgttaaaaca aacctggtcg ttctagggga 1980 gaggtacgtt agagactctc acgcttggaa acagatggga gtgttgcaca acattaagtc 2040 tggaagtagg tacgtggcgt acactttcgt agaagaaagt ggggttatgt acattactta 2100 ttcgatcgga aaactgagag acatgagtgt tgaggaactt cttagttccg tggcatttta 2160 gtctcgttta gtactgtggg ttgatcacat caacggtggc ttgcaccata gcaagtacag 2220 ttgtgggaag ctgtgtaaat aattcctgta tcttgatctc atcaagggtg gttgttacca 2280 taaacaataa tgttgtagga agcatttaaa ataattcctg gcttatcgaa atcacgatga 2340 tatcctggac attaggatgg tttaggctgt acttaccaca aggaggtgac ggagagagga 2400 ctttgaggat cagctggcgt ggaaccaacg tatacatgtt tggtgaacag gttgaactac 2460 ctacgtgttg ggacaacaac tcgtggcgag gatctgcgta tcgcgttatt aggatgaatc 2520 atatagatta tcacgtccgt gtcttctaca cctggcttgg agcgatgcac cactgttacg 2580 tctggatata ttatccagca ggtggtggaa tctcccatta ccgtcgccgg ttagtggttg 2640 ataaccgcaa caataattat gcggctggtg aagaatttcc attcaataat gtgaatctgt 2700 tgaccggtgt ggttacgcaa ggtgatttgt tacatggagt tagtctcaac gctggcactc 2760 atctttacac atttacacct acacttgaac tgcgctgggg ttaaggtcgt agttttaaaa 2820 ataagttgct gagatcgaaa ccttctaaga agaaattcga agggggtaga aaaagtctcg 2880 tcactcgaaa gagtacggga caccaaaaag attttgagag atgatgttcc atttggaatt 2940 gatcaattgt ttactttttg attttgtatt gtattgttat tcattcctgt gtatagactg 3000 tttaagattg gcatttggcc gacttattgt cttaccatag gggagtggac tttgtttgtg 3060 ttgttatttt atttgtattt tattaaaatt ctcaatgatc tgaaaaggcc tcgaggctaa 3120 gagattattg gggggtgagt aagtactttt aaagtgatga tggttacaaa ggcaaaaggg 3180 gtaaaacccc tcgcctacgt aagcgttatt acgccc 3216 //