Dbfetch
ID AJ007934; SV 1; linear; genomic RNA; STD; VRL; 3039 BP. XX AC AJ007934; XX DT 17-JUL-1998 (Rel. 56, Created) DT 02-MAR-2000 (Rel. 62, Last updated, Version 3) XX DE cucumber mosaic virus RNA encoding RNA polymerase and 2B protein, clone DE RNA2 XX KW 2A gene; 2B gene; 2b protein; RNA polymerase. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3039 RA Szilassy D.; RT ; RL Submitted (15-JUL-1998) to the INSDC. RL Szilassy D., Plant Virology, Agricultural Biotechnology Center, POB. 411., RL Godollo, H-2100, HUNGARY. XX RN [3] RX DOI; 10.1023/A:1008016202128. RX PUBMED; 10456790. RA Szilassy D., Salanki K., Balazs E.; RT "Molecular evidence for the existence of two distinct subgroups in cucumber RT mosaic cucumovirus"; RL Virus Genes 18(3):221-227(1999). XX DR MD5; 995857bd196f45f3d357044fc6cbe0f1. DR EuropePMC; PMC136033; 11884564. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3039 FT /organism="Cucumber mosaic virus" FT /strain="Trk7" FT /mol_type="genomic RNA" FT /clone="RNA2" FT /db_xref="taxon:12305" FT CDS 93..2615 FT /gene="2A gene" FT /product="RNA polymerase" FT /db_xref="GOA:O90707" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O90707" FT /protein_id="CAA07770.1" FT /translation="MTSPPPTFSFANLLNGSYGADTPEEVERVRREQREDAEAALRNYK FT PLPTVDVSESVPRDEPIVSQTVTTAPVTSVVDAFVSFGAEDYLEMSPSELLSAFELMVK FT PLRIGEVLCPNFDRSLFISSVAMARTLLLAPLTSTRTLKRFEDLVAAIYLKTDFFLEDD FT GPQTDVSQSDVPGYIFEPGQHSSGFEPPPICAKCDLILYQCPCFDFNALRESCAEKTFS FT HDYVIEGLDGVIDNATLLSNLGPFLLPVHCSYSKTEDPDFVVDPSLARPTDRVDAHVVQ FT AVCDTTLPTHVNYDDSFHQVFVDSADYSTDMDHVRLRQSDLVAKIPDGGHMLPVLNTGS FT GHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFRLSYMNVDALAKSNFVN FT VVGNFHAYMQKWQSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVTDTLNVDRPVPATI FT TFHKKTITSQFSPLFTSLFERFQRCLRERIVLPVGEISSLEMTGFSVLNKHCLEIDLSK FT FDKSQGEFHLMIQEHILNDLGCPAPVTKWWCDFHRFSYIKDKRAGVGMPISFQRRTGDA FT FTYFGNTIVTMAEFAWCYDTDQFDRLLFSGDDSLAFSKLPPVGDPSKFTTLFNMKAKVM FT EPAVPYICSKFLLSDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDFLFAHFMSFVDRLK FT FMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYKELYYSDRQQCDLV FT NTFCISEFQVIRRTTVKKKKNGCVDSSGVDRRPPPSPFAGGETSKTKVSRQKPASEGLQ FT KSQRESAIYSETFPDVTIPRSRSRGLVS" FT CDS 2413..2715 FT /gene="2B gene" FT /product="2B protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:O90708" FT /protein_id="CAA07771.1" FT /translation="MGVLTVVVSTADLHLAHLQEVKRRRRRSHVRNRRARGYKSPSERA FT RSIARLFQMLPFHGVDPVDWFPDVVRSPSVTSLVSYEPFDDTDWFAGNEWAEGSF" XX SQ Sequence 3039 BP; 722 A; 706 C; 684 G; 927 T; 0 other; gtttattctc aagagcgtat ggttcaaccc ctgcctcctc tgtgaaatta ccctagtttt 60 attgatctac ttctagtctc ttttctgtta ctatgacaag tcctccaccc actttctcat 120 tcgccaatct gttgaatggc tcctatggtg ctgacactcc cgaggaagtg gaacgcgtta 180 gacgtgaaca acgcgaagat gctgaggcgg ctttacgtaa ttataagcct ttacccactg 240 tggatgtcag tgagagtgtc cctagagacg aacctattgt ctcgcaaacc gtcactacag 300 ctcctgttac atcagtcgtt gacgcgtttg tttcttttgg tgctgaggac taccttgaaa 360 tgtccccatc tgagctgctt tccgcttttg agttgatggt caaacccttg cgtatcggtg 420 aagtgttgtg cccgaatttt gatcgttcgc tattcatctc cagcgtcgct atggctagga 480 cgttgttgtt ggcaccactc acatccaccc gaacgttgaa gcgttttgaa gaccttgtgg 540 ccgcgatcta tctaaaaact gatttctttt tagaagacga tgggccccag actgatgtct 600 cccaaagcga tgtgcccggt tatatcttcg aaccagggca acactcatcc ggttttgaac 660 ccccccctat ttgtgctaaa tgtgacttga ttttgtatca atgtccgtgt ttcgatttta 720 acgcacttcg tgagtcttgc gcagagaaaa cattctctca cgactatgtt atcgagggtc 780 tcgatggtgt cattgataac gctacgctgt tatcaaattt gggaccattt ttgttacctg 840 tccattgttc ttattcaaag accgaggacc ccgatttcgt cgttgatcct agtcttgcgc 900 gacctactga tagggttgat gcacatgtag ttcaagccgt ttgcgatacc actctgccca 960 cccatgttaa ctacgatgat tcctttcatc aagtctttgt ggactctgct gattattcca 1020 ctgacatgga tcacgttcgg ttacgtcaat ccgatttagt agcaaaaatt ccggatggtg 1080 ggcatatgtt accggtgtta aataccggga gtggtcacaa gagagtaggt actacgaagg 1140 aggtcttaac agcaataaag aaaagaaatg ctgatgtccc tgagcttggt gactctgtta 1200 atctgtcacg cctgagcaaa gcagtagccg aacggtttcg tctctcgtat atgaatgttg 1260 acgctttggc taaaagtaac tttgttaatg ttgtcggtaa tttccacgct tacatgcaaa 1320 aatggcaatc ttctggactt tcttatgatg atcttcctga tcttcacgcg gagaatttac 1380 agttttatga tcacatgatt aagtccgatg ttaagccagt tgtcaccgac acgttgaacg 1440 tcgacagacc tgtcccagct actattacat ttcacaaaaa gaccataaca tcccagttct 1500 caccgttgtt tacatctctg tttgagagat tccagagatg ccttcgggaa cgtattgttc 1560 tgcccgttgg tgagatttcc tcccttgaga tgactggttt ttcagtcttg aacaaacatt 1620 gtcttgaaat tgatttatct aaattcgaca aatctcaagg tgagttccac ctcatgattc 1680 aagagcacat tctcaacgat cttggttgcc cagcacccgt caccaaatgg tggtgtgact 1740 ttcataggtt ttcctatatt aaagacaaac gtgctggggt tggaatgccc atcagctttc 1800 aacgccgtac tggtgacgct ttcacctatt ttggcaatac tattgtcacg atggctgagt 1860 ttgcttggtg ttatgacact gatcaatttg accgattgct cttttctggt gatgattctc 1920 tggccttttc taagctccca cctgttggag atcccagtaa gtttacaact ttattcaaca 1980 tgaaagctaa ggtgatggaa cctgcagtac cttacatttg ttcgaagttt ctactctctg 2040 atgagtttgg taatacgttt tcagtccccg acccactacg tgaaatccag cggttaggta 2100 ccaagaagat accgtactcg gacaacaacg atttcttgtt cgctcatttt atgagttttg 2160 ttgacaggct gaagtttatg gacaggatgt cgcagtcctg tattgatcaa ttgtccattt 2220 tcttcgagtt gaaatacaag aagtccggga acgaagccgc ccaagttttg ggcgcgttta 2280 agaagtacac cgctaatttt aacgcctata aggagcttta ttactctgac cgtcagcaat 2340 gtgacttggt caatacgttt tgtatatctg agttccaggt gattcgtcgc actaccgtta 2400 agaagaagaa gaatgggtgt gttgacagta gtggtgtcga ccgccgacct ccacctagcc 2460 catttgcagg aggtgaaacg tcgaagacga aggtctcacg tcagaaaccg gcgagcgagg 2520 ggttacaaaa gtcccagcga gagagcgcga tctatagcga gacttttcca gatgttacca 2580 ttccacggag tagatcccgt ggattggttt cctgatgtcg ttcgctctcc gtccgttacc 2640 agcctcgttt cttatgaacc ttttgatgat actgattggt ttgctggtaa cgaatgggcc 2700 gaagggtcgt tctgatttcc gacccttcgt cgtccgaaga cgttaaacta cgctctcttt 2760 attgcgagtg ctgagttggt aagtttgctc taaactatct gaagtcgcta aatccattac 2820 tggttgcgaa cgggttgtcc atccagctta cggctaaaat ggtcagtcat gccccaaagg 2880 catgccgaca ccctacaggg ttgtcgaggt acccttgaaa tcatctccta gatttcttcg 2940 gaagggcttc gtgagaagct cgtgcacggt aatacactga tattaccaag agtgcgggta 3000 tcgcctgtgg ttctccacag gttctccata aggagacca 3039 //