ID AJ007293; SV 1; linear; genomic RNA; STD; VRL; 3864 BP. XX AC AJ007293; XX DT 24-SEP-1999 (Rel. 61, Created) DT 24-SEP-1999 (Rel. 61, Last updated, Version 1) XX DE Tobacco rattle virus genes encoding coat protein and 27 and 33 kDa proteins XX KW 27 kDa protein; 33 kDa protein; coat protein; cp gene. XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3864 RA Koenig R.; RT ; RL Submitted (18-JUN-1998) to the INSDC. RL Koenig R., Institut fuer Biochemie und Pflanzenvirologie, Biologische RL Bundesanstalt fuer Land- und Forstwirtschaft, Braunschweig, Messeweg 11, RL D38104, GERMANY. XX RN [2] RX DOI; 10.1007/s007050050521. RX PUBMED; 10226616. RA Schmidt K., Koenig R.; RT "Genetic analysis of large-sized RNA 2 species of a TCM-like tobacco rattle RT virus source from spinach"; RL Arch. Virol. 144(3):503-511(1999). XX DR MD5; 85127156186952612f7066000f13f3ad. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3864 FT /organism="Tobacco rattle virus" FT /host="spinach" FT /isolate="SP" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 710..1342 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q9QBL2" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q9QBL2" FT /protein_id="CAB56545.1" FT /translation="MAGTYGDSFEGKILDDLSGAWVEKHNWSDILKRLTKIKFALQADR FT DMIPGIVEDLNTEIPVDEFTRFPAGKVYHLLSKELLLAIEAIHAASSFKRRAEEKNNVN FT PRQRFDAEGSTTQLNPGGTVVRPVTGNNDSSLGEDMFSNSKLDDASTAFHKSLATLKGS FT RPKAVVQRTFEREYNLKWVAGTAGAPAGGNAVASGGTPPGGGRGPGP" FT CDS 1473..2189 FT /product="27 kDa protein" FT /function="unknown" FT /note="ORF1" FT /db_xref="GOA:Q9QBL1" FT /db_xref="InterPro:IPR007935" FT /db_xref="UniProtKB/TrEMBL:Q9QBL1" FT /protein_id="CAB56546.1" FT /translation="MVNGDWADKWPAENLFIDDFGKLVWFDILDDVVGITHFVSQVPTD FT LSNIPKAFISFIDNRVPMCINSKGWIFMRVKVDGRDVYYQKLGELDVSSFGDSILSPDF FT EFKFTKITVPVDKQLVSRINSLEKLNAQLTTDLSQARTLKNFEELREGLVLNYSKAGGR FT LYRMVVRMIGGNWKLVAEINNDSDRWATLSANLVLKPDAQYLGYKVVRRFNAIGLEFDL FT ARLNAIDIPTLLTSVV" FT CDS 2364..3227 FT /product="33 kDa protein" FT /function="unknown" FT /note="ORF2" FT /db_xref="GOA:Q9QBL0" FT /db_xref="UniProtKB/TrEMBL:Q9QBL0" FT /protein_id="CAB56547.1" FT /translation="MGDVFSAFILELTSEVTFSVWFNRKNFSTNSGRVFPFDGTIPTIG FT DWLVVYCHWWPDGSTTIHLSTRSHNVDVGRSCTFSVAGRNRRKFQVERDLPMYNTVSHR FT NANFENGFRIRFPESSPFTVDFVLSFRPNLCKFSNASGSIIVIGPRFDVVVGLENYLDL FT LKGRLRIPRAIPIPVIALVVSIIGILVSISGIVVNALTRFTPIENVVLVWVDSIHRFVV FT YKHERFDIRSVRTVSVEQVKALLAGPTNAEKFSREYGWKVYSPFFTALVWDEMAKDSVF FT GSTYST" XX SQ Sequence 3864 BP; 1088 A; 637 C; 906 G; 1233 T; 0 other; ataaaacatt gcacctttgg tcgtgccctg gctggggtat gtctttgaac gcagtagaat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacaca gcctttatcc 120 ctcttcctga cgaggttttt gtcagtgtat catgttgttt tgaactatcc aacttagtac 180 cgaatgggga aagtgattgg tgtgcttatc ttcgatatga tactttgaaa tttgtgtagt 240 aggtagttag aaaagaaact cttgtcttct caaacaagta aaacctgaga cgtgttaact 300 acgaaagtgt ccattttaaa atctgtggtt gaatgttgtg ttcaactgtg gaaaccaaaa 360 ccgatgtggg aagaactgga ctgatacttc agtctgaggt gtttctacga tcgcaagggt 420 gtgttaaagc cctgggggtt ttctggtttc tttagagaaa atcagataag atcttaatat 480 cattattgag gttggcataa ttatactgat tatgtcctcg ttgatagaga ctatcatctg 540 tcatttgctt caagaaacaa tggcattggt tcggaacgac ctcatttctt agttatgtaa 600 ctaggaattg cataaattta acaaaggttg ctaagcaact tattttgaac actttgataa 660 gaagatttgc tgaaacactg gttgcttaat cacttactct tcttcaccaa tggctgggac 720 gtatggagat tcctttgaag ggaagatctt agatgatctg tctggagctt gggtcgagaa 780 acataattgg agcgatattc ttaaaaggtt gacaaagata aaattcgcct tacaagctga 840 tagggatatg attcctggaa ttgtagaaga tttgaacact gaaattccag tggatgaatt 900 tactagattt ccggctggca aggtttatca cttactgtcc aaagaattgc tgttggcgat 960 tgaagctatt cacgctgcat cttccttcaa aagaagagca gaagagaaga acaatgtcaa 1020 tcccaggcaa cgatttgatg ccgaaggatc tacaacgcag ttaaacccag gaggaactgt 1080 ggttagaccc gtcactggta acaacgattc atctctgggc gaagatatgt tttctaatag 1140 taagttggac gacgccagca ctgctttcca taagagttta gccactttaa agggcagtcg 1200 gcctaaggcg gttgtccaaa gaacgtttga aagagaatac aatctgaagt gggtggcagg 1260 aacggctgga gcaccagcgg gtggcaatgc agtagcaagt ggcggcactc cacctggtgg 1320 tggacgtggt ccgggtcctt gatcttctca actttgtcag tatttcatgg tctggttgac 1380 catttggttt tggttttgag cagcgttggg ttacgaatat gatcgcagtt ttaaatgtct 1440 tttgactttt gtcgcagacg gcatatgtga aaatggttaa cggagattgg gctgataagt 1500 ggccagctga aaatttgttc attgatgatt tcggaaaatt agtatggttt gatattctag 1560 atgatgtggt tggtatcact cattttgttt ctcaagtgcc aacagatctt tcgaatatac 1620 ctaaagcatt catctctttt attgataatc gagtccctat gtgcataaat tccaaaggtt 1680 ggatattcat gagggttaag gttgatggga gagacgttta ctatcagaaa ttgggagaac 1740 tagacgtttc ttctttcgga gactcaatat tatcacctga cttcgagttc aaatttacga 1800 agattacagt gcctgttgat aaacaattgg ttagcagaat taactcttta gagaagttaa 1860 atgctcaact aacgacagat ctcagtcaag ctcgtactct taaaaatttt gaagaacttc 1920 gagaaggttt agtgttgaat tattcaaaag cagggggtcg gctctacaga atggtggtaa 1980 gaatgatagg tggaaactgg aagttggttg ccgaaatcaa caatgattca gatagatggg 2040 ccactttgag cgctaacttg gtccttaaac cggacgcaca atacttaggc tacaaagttg 2100 taagaagatt taatgcgatc ggacttgaat tcgatttagc aaggttgaat gcgatagaca 2160 ttccaacttt gttaacgtct gttgtgtaaa ccaaattact tatgtgggtc gatcacatcg 2220 acggtggcct agaccatact aggtgaagtt gtgggaagct tcgaaaataa ttcccgtggg 2280 caaatctcat ttgcggtggt tgttaccata aacaataatg tcgttggttg catttaaaat 2340 aattcctttt gtctgttggt aacatgggag atgtattcag tgcttttatt cttgaactaa 2400 cttcggaagt tactttctcc gtgtggttta ataggaagaa cttttccact aattctggtc 2460 gtgtatttcc tttcgatggt actattccaa caatcggtga ttggttagtc gtttattgtc 2520 attggtggcc tgatggttca acaacaatac atttatcaac aaggtctcac aatgtcgacg 2580 ttggaaggtc ttgtacgttt tcagtagctg gacgtaatag acgtaaattt caggtggaaa 2640 gagatttacc aatgtacaac actgtttctc acaggaacgc gaattttgaa aatggtttca 2700 ggatcagatt ccctgagtcg tctcctttca cagtcgattt tgttttgtcc tttagaccta 2760 acttgtgtaa gttttctaat gctagtggtt ctatcattgt aattggacct aggtttgacg 2820 tggtagttgg tttggagaat tatcttgact tacttaaagg tcggttgaga attcctcgcg 2880 ctatacctat tcccgtaatt gcgttagttg tatctataat aggtatactt gtatcaatat 2940 ctgggattgt cgtgaatgca ttaacacgct ttacgccgat agagaacgta gtattggtgt 3000 gggtagattc gattcataga tttgttgttt acaaacacga aagatttgac atccgatcag 3060 ttagaacagt atcagttgag caagtaaaag cactactagc tggtcccacg aatgctgaga 3120 agttctctcg tgagtacggt tggaaggtgt attccccttt tttcactgca cttgtctggg 3180 atgaaatggc gaaagacagt gtctttgggt cgacgtattc aacctaagca agatgtttgc 3240 tgaaggacgt taaaatcaat aacctactga gtaatttctt acctagaaaa ctgtttgcgc 3300 agttagtaaa gatagaaagg aaagttgatt ggagttgatt ttgttgagaa aatttgtatt 3360 tttacttttg atgtgtataa ttgttgtgac cgtagtcacc ttgaaaaatg tcgtaaacgc 3420 gttgaagcac gaaatcggga gacctggaaa caggtcaagc gaactcaagc tgaaaaggcg 3480 tttgctacag tcaaaaagtc tcgttcgagg ccttctaaga agaaattaat aggaggaaga 3540 gagtttgggg caccaaaagg attttaaaat gatgttcctt taggaattat tcagttgttt 3600 gcttttgatt ttattttaaa ttgttatctg tttctgtgta tagactgttt gagattggcg 3660 tttggccgac tcattgtctt accatagggg aacggacttt gtttgtgttg ttattttatt 3720 tgtattttat taaaattctc aatgatctaa aaaggcctca cggccaagag attattgggg 3780 ggtgggtaag tacttttaaa gtgatgatgg ttacaaaggc aaaaggggta aaacccctcg 3840 cctacgtaag cgttattacg ccca 3864 //