ID AJ006459; SV 1; linear; genomic DNA; STD; VRL; 2804 BP. XX AC AJ006459; XX DT 16-NOV-1998 (Rel. 57, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE East African cassava mosaic Malawi virus-Malawi[MH] AV1, AV2 and AC1 genes, DE (isolate MH) XX KW AC1 gene; AV1 gene; AV2 gene; coat protein; rep protein. XX OS East African cassava mosaic Malawi virus-Malawi[MH] OC Viruses; Geminiviridae; Begomovirus. XX RN [2] RP 1-2804 RA Robinson D.J.; RT ; RL Submitted (27-MAY-1998) to the INSDC. RL Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie, RL Dundee, DD2 5DA, UK XX RN [3] RA Zhou X., Robinson D.J., Harrison B.D.; RT "Types of variation in DNA-A among isolates of East African cassava mosaic RT virus from Kenya, Malawi and Tanzania"; RL J. Gen. Virol. 79:2835-2840(1998). XX DR MD5; 04e15486a3b4a4f1f7023fafd9f533ea. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC3163225; 21812981. XX FH Key Location/Qualifiers FH FT source 1..2804 FT /organism="East African cassava mosaic Malawi FT virus-Malawi[MH]" FT /chromosome="DNA-A" FT /segment="A" FT /strain="Malawi strain" FT /isolate="MH" FT /mol_type="genomic DNA" FT /db_xref="taxon:223266" FT CDS 174..524 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q77C77" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77C77" FT /protein_id="CAA07043.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQALEETYEPNTLGHDLVRDL FT ICVIRARDYVEATRRYNHFHSRLEGASKAELRQPVQQPCCCPHCPRHKQATIMDVPAHV FT SKAQNVQNVQKS" FT CDS 334..1110 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q9YQR2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9YQR2" FT /protein_id="CAA07042.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPFSSRAVVPIVQGTNKRRSW FT TFRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGAVRCVSDVTRGSGITH FT RVGKRFCVKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDN FT EPSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALIKRFLKVNNHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1568..2647) FT /gene="AC1" FT /product="Rep protein" FT /db_xref="GOA:Q9YQR1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9YQR1" FT /protein_id="CAA07044.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIEGAKSSSDVKAYI FT EKGGEFLDDGVFQVDARSARGEGQHLAQVYAEALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQIPPQTYVSPFLSSSFTHVPDEIEIWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLHEPL FT FSSAYQSPTPHREEQGTQT" XX SQ Sequence 2804 BP; 730 A; 560 C; 695 G; 819 T; 0 other; accggatggc cgcgcctgac aaagtatgtg gaccccattg gacggccgcg cccgtaaaag 60 aaaatggtcc ccgcgcacgt gttgctgtca gccagtcata ttcacgcgtg aaagcctaga 120 tattggatta atgccgttat atacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaatgagttc cccgattctg tgcacggttt tcgctgtatg cttgctatta 240 aatatttgca ggccttggag gaaacctacg agcccaatac tttgggccac gatctagtcc 300 gtgatctcat ctgtgttatc cgagcccgtg attatgtcga agcgacccgc cgatataatc 360 atttccactc ccgcctcgaa ggtgcgtcga aggctgaact tcgacagccc gttcagcagc 420 cgtgctgttg tccccattgt ccaaggcaca aacaagcgac gatcatggac gttccggccc 480 atgtatcgaa agcccagaat gtacagaatg tacagaagtc ctgatgttcc tcgaggatgt 540 gaaggcccat gtaaggtaca gtcctatgaa cagagagacg atgttaagca caccggtgct 600 gtgcgttgtg ttagtgatgt tactcgtggt tcgggtatta ctcatagggt agggaagaga 660 ttttgtgtta agtcaatata tgttttagga aagatttgga tggatgaaaa cattaagaag 720 caaaaccata ctaatcaggt tatgttcttc ttagtccgtg acagaaggcc ttatggcaca 780 agccccatgg acttcggaca ggtttttaat atgtttgata atgagcccag tacagctact 840 attaagaatg atttgcgaga taggttccaa gtgttgcgga aattccatgc cactgtggta 900 ggtggtccct caggcatgaa ggagcaggcg ttgattaaga ggtttcttaa ggtgaataat 960 catgttgtgt ataatcacca ggaggcagcg aagtatgaga atcatacaga aaatgcgttg 1020 ttgttgtata tggcatgtac gcatgcctct aatccagtgt atgctacgct taaaatacgc 1080 atctattttt atgatgcagt aacaaattaa taaaggttga attttatttc atggtgctcc 1140 gtaacttgga gtgtgttcag taatacattg tacaggacat gatcaacagc tctaagtaca 1200 gtgttaatgg aaataactcc tatcatattt aaatatttga gcacttgata tctaaatact 1260 tttaagaaaa gaccagtcgg aggctgtaag gtcgtccaga ccttgaagtt gagaaaacac 1320 ttgtgaatcc ccaatgcctt cctgatgttg tggttgaacc gtatctggag tgtgatgata 1380 tcgtggtgca tgttccctgg tctcttgtcg tggttggtga ttgcgaaata gaggggattt 1440 gttatttccc aagtaaaaac gccattcttt gcttgaggcg cagtgatgag ttcccctgtg 1500 cgagaatcca tgattgatgc agtcgatatg gagatagaac gagcagccgc attcgaggtc 1560 taccctccta cgtctgagtg ccctgttctt cacggtgcgg tgttggactt tgataggcac 1620 ttgagaacaa tggctcgtgg agggtgatga aggtggcatt ctttaaagcc caggctttaa 1680 gggattggtt cttttcctct tccagaaact ctttatatga tgatgttggt cctggattgc 1740 agaggaagat agtgggaatg ccgcctttaa tttgaatcgg cttcccgtac tttgtattgc 1800 tttgccagtc cctttgggcc cccataaatt ctttgaagtg cttgaggtag tgtgggtcga 1860 cgtcatcaat gacgttgtac caggcgtcgt tgctgtagac ctttggacta agatccaaat 1920 gtccacacaa gtagttgtgt ggtcccagag atcgggccca catcgtcttc cctgtcctac 1980 tatcgccttc tagaacaata ctgatcggtc tccatggccg cgcagcggga ctgcatatat 2040 tttcggatac ccatatttct atttcgtctg ggacgtgtgt aaatgaggat gataaaaacg 2100 gacttacata agtttgtggc ggaatctgga agattctatc tgcattagca gatatgttat 2160 ggaactgcaa aaaaaaagac ttcggatctt tttctttaat aatttgaaga gcttctgatt 2220 tagaagaagc attcaacgct tctgcatata cctgagctaa atgctggccc tcaccccttg 2280 cacttctggc atcgacttgg aaaactccat cgtcaagaaa ttcccctccc ttttcaatgt 2340 aagctttgac atcggacgat gatttagctc cctcaatgtt cggatggaaa tgtgttgatc 2400 tggatgggga aatgagatcg aagaatctcg ggttggtaca ttggaattta ccttcgaatt 2460 gaatgagaac atggagatga ggcaccccat cctgatgtag ttctctgcaa accctaatga 2520 atttaatatt cgtcgggtaa gaaagggctt gtaattggga aagggcctct tcttttgtta 2580 aggagcatcg gggatatgtt atgaaataat ttttggcatt gatttgaaaa cgacctgctc 2640 ttggcatatt tgctgtcgtt ttagatcggg ggacactcaa aactccaggt gaatggggga 2700 acggggggca ttatatagga tgtcccccaa tggcatatgt gtaaataggt agagttacat 2760 tcaaaatttg aattccgaat aatggcggcc atccgattaa tatt 2804 //