ID AJ005762; SV 1; linear; genomic DNA; STD; PLN; 5846 BP. XX AC AJ005762; XX DT 04-MAY-1999 (Rel. 59, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Phaseolus vulgaris DNA for retrotransposon Tpv2-6 plus flanking host DNA XX KW retrotransposon; Tpv2-6. XX OS Phaseolus vulgaris OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus. XX RN [1] RP 1-5846 RA Bachmair A.; RT ; RL Submitted (01-MAY-1998) to the INSDC. RL Bachmair A., Institute of Botany, University of Vienna, Rennweg 14, Vienna, RL A-1030, AUSTRIA. XX RN [3] RX DOI; 10.1023/A:1006132532684. RX PUBMED; 10350093. RA Garber K., Bilic I., Pusch O., Tohme J., Bachmair A., Schweizer D., RA Jantsch V.; RT "The Tpv2 family of retrotransposons of Phaseolus vulgaris: structure, RT integration characteristics, and use for genotype classification"; RL Plant Mol. Biol. 39(4):797-807(1999). XX DR MD5; 1064b10ffc05f85756d49dc2041f5536. XX FH Key Location/Qualifiers FH FT source 1..5846 FT /organism="Phaseolus vulgaris" FT /cultivar="Saxa" FT /mol_type="genomic DNA" FT /db_xref="taxon:3885" FT repeat_region 501..797 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="5' LTR" FT CDS 816..4862 FT /pseudo FT /gene="Tpv2-6" FT /note="gag-pol fusion protein" FT variation 2802 FT /replace="c" FT /note="putative in active protein" FT repeat_region 4879..5157 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="3' LTR" XX SQ Sequence 5846 BP; 1959 A; 990 C; 1382 G; 1515 T; 0 other; gatctagata tttgttcaga agtttaaacc tcgtatacgt tctacccctt agtcatatct 60 accttaaaga gacatcacat ttttgcaata gtttttgaaa gaccaagtta aagttgctca 120 accgtctatg cagattatgc ataagacagt ctacaaagtt tcttcggact gtatgtgtcc 180 acacctttta tagcgttgaa tttgaagaag ctgaaagtta ttcgggaacc ctaaattaca 240 ctctctattc aaccttccaa ggttgatctc tctgtaaagg cttatagttg ggccaatgcc 300 tttgctaaaa aataaggctt caagagaact cttacagaag gcgaaaatat tcaaacatca 360 aaagagaaga cgtacaagga ttccaactta gcgtcctcat ccagattatt tcataaagaa 420 tgtctagatc agcacaaatc ttcttacgac ctacccaatg atgtcaccac attcttttta 480 caagaaccag actttgaatt tgttgaataa actttaatgt aatttgtggg ttttaaagtt 540 agaagttact agaaaagagt agaatgggag tttggatatg taaaaggtca aaagttggga 600 gtgggatttt aattatgttg ttagtggggt tttaaggcca taatgaagat ttttctagaa 660 ggcttcctaa agcctataaa aatgatgctc tctcaattgt aatatgcacc acagaaagaa 720 atacaataga gagaaattca aagaagagtg ttttcaatag agagaaaatt caagtgtgag 780 tgattgcttg ttttacaatt tggtatcaag agccaatggt gaatgtgatg ggtcaaatac 840 cgctaccacg attatcgaag gcaaccacat atgataattg gagcattcaa atgaaagctc 900 ttttcggttc tcaagataca tgggaggtgg tcgaagaagg tttcgaagaa ccaacaaata 960 ccatgggtta tacggcagct caaaccaagg tgttgaaaga gatgcgatca aaggataagg 1020 cagcactata catgttgttc cgagcggttg atgagtcggg ctttgagaag attgccagtg 1080 caactacttc aaaagaagcg tgggacatct taaaaaaggt gttcaaagga ttcgaccgag 1140 ttaagcaagt gcgtctacaa actcttcgtg gcgagttgga gagcatgaag atggagtcgg 1200 aaagtgtatc tgactatatt acgcgtgtac agactgtggt gaatcaactt aaccgaaatg 1260 gtgaaaagtt gaccgatgca cgagttgtgg agaagatttt gagaacatta accgataatt 1320 ttgagagtat tgtgtgcgta atagaagagt caaagaacct aacgacactc ataatcgaca 1380 agcttgccgg ttctctcgag gcacacgagc aacgaaagaa gaagaagaag gaggaaacac 1440 tcgagcaagc acttcaaacc aaggcgttaa tcaaagacga aaagttactc tatcatcaaa 1500 attctcaata tagagggcgt ggtcgtggaa gtcgtggaaa cagtcgtggt ggaaaaggta 1560 gcaaccatga agggtattat aaggaaaagg aacagtcgag ccaaccaaat tggcgtggaa 1620 gaggacgtgg tagaggaaga ggcggccgat cgaattattc caacatcgag tgctacaaat 1680 gccacaaata tggtcactat gcgaaggatt gtaactctga caaatgttac aattgtggta 1740 aagtggggca ttttgcaaaa gattgtcgtg ttgatataaa gatagaagaa acaaccaacc 1800 tagccttgga agtcgaaacg aatgaaggtg ttctcttgat ggctcaagat gaagtcaaaa 1860 ttaacagtta cactctgtgg tacctcgact caggagcaag caaccatatg tgcggtcacg 1920 agtacctatt caaagatatg caaaagattg aagatggtca tgtgtcattt ggagatgcat 1980 caaaggtgga ggtcaaaggg cgaggtacag tttgctactt acaaaaggat ggcttaattg 2040 ggtcactcca aaatgtttat tacgtatcag acctcaagac caacatattg agtatggggc 2100 aactcacgga gaaaggttac tcgatttttc tgaaagatcg gctactacac ttgaagaaca 2160 agcaagggcg tttggttgct caaatcgaga tggcaagaaa tcggatgtac atgctgaatt 2220 tgagaagcat acaagaaaaa tgtttgcaag tcaacataga agacaaggca tcattgtggc 2280 atcttcgttt tggtcaccta catcatggtg gactaaaaga gttagcgaag aagaatatgg 2340 tgcacgggct acccaacatg gactacgagg gaaaattttg tgaagaatgt gtgctcagca 2400 agcatatgag aacctcgttt ccaaagaagg ctcaatattg ggctaagcaa cctctcgaat 2460 tgattcatac cgacatatgt ggaccaatta ctccagaatc cttcggcggt aaaaggtatt 2520 ttgttacctt tatcgatgat ttctcacgaa agacttgggt ttattttctg aaggaaaaat 2580 ccgaggcatt tgaggtgttg aaaaagttca aggtgatggt ggaaagggca actgatagac 2640 agatcaaagt tgtacgatct gatagaggtg gcgagtatac ttcaacggct ttcatggagt 2700 attgcgagga gcaaggcata aggcgatttc taactgcacc atacactcct caacaaaatg 2760 gtgtggccga aaggaagaac cggaccattc tcgacatggt ttgatcaatg cttaagagca 2820 aaaagatgcc aaaggaattt tgggcggaag ctgtgcaatg cgccatttat gtgcaaaatc 2880 gatgtccaca tgtgaagtta gatgatcaaa caccacaaga ggcatggagc ggacaaaagc 2940 caacaatttc tcatctcaaa gtgtttggta gtgtggctta tgcacacgta cctgatcaac 3000 gaagaacgaa gctcgaagac aaaagcaaaa ggtatgtttt tattgggtat gatgagaaga 3060 caaaaggata caagctcctt gacccgataa gcaagaaggt aatggtgagt cgtgatgtgc 3120 gaataaatga aacaagcaag tgggattgga acaattcttc agaggttatg attgaagttc 3180 gagaatcatc aatagttgca ccgacaagta taaactccga aacaaccgat gatgaagatg 3240 aaccacgaca acctaaaatt cgaagtttgc atgatttgta tgattcgaca aatgaggtac 3300 accttgtatg tcttttggca gatgcagaaa atatcaactt tgaagaggcg gtgcgagaca 3360 agaagtggca aactgccatg gatgaggaga ttaaagcgat tgaccgcaac aacacatggg 3420 agctaacaga attgccagac ggaagtcagc ccattggtgt gaagtgggta ttcaagaaaa 3480 agatgaatgc tcaaggcgag atagagaggt acaaggcgcg actcgttgcg aagggataca 3540 aacaaaagga gggaattgac tacgatgagg tgtttgctcc cgttgtaaga atggagacaa 3600 ttcgattgct catttcccaa gcggctcaat ttaaatggcc gatatttcaa atggatgtca 3660 agtcggcatt cttgaatggt gtgcttgaag aagaagtcta catcgaacaa ccacccgggt 3720 acatgaaaat cggagaggag aagaaggtgc taaaatttaa gaaggcactt tacgggttga 3780 agcaagcatc gcaggtatgg aatactcgta tcgatacata cttcaaggag aacaggttca 3840 agcaatgtcc ttacgagcat gctctttatg caaagaacaa tggaggtaac atgatatttg 3900 ttgctattta tgttgatgat ctcattatta tgggtaacaa taatgagatg atagaagagt 3960 ttaagggcac aatgagacgg gaatttgaga tgacagattt gggattgatg aagtttttcc 4020 ttggcttaga ggttagacaa aaagagacgg gtatttttgt atcacaggag acatatgcaa 4080 aggatatttt gaagaagtac aagatggaaa attgcaaccc agtatcaata ccaatggaac 4140 caggtgcaaa actctcaaag ttcgatggag gagaacgtgt cgatgcaagt agataccgga 4200 gtttggtagg aagccttcgt tatctcacat gcacgaggcc ggatctttca ttaagtgtcg 4260 gcatcataag tcgattcatg gaggaaccgt tttactcaca ttggaaggcg ttgaagcgag 4320 tcctacggta catccaaggt actatatcac ttggattgtt ctactcaaaa gtagaagatt 4380 acaagttggt gggttactct gacagcgatt ggtgcggaga gatagatgat aggaaaagta 4440 catcgggata tgtattctat atggggaaca caacattttc atggctttca aagaagcaac 4500 cgattgtgac gctatcgacg tgtgaagctg aatatgtggc agcttcttgg tgtgtatgtc 4560 atgcgatatg gcttagaaac ttgttgacca agatggagct aaagcaacta ggtgcaaccg 4620 tggttcaagt tgacaacaaa tcagcaattg agttggcaaa ggacccagtg aaccatgaaa 4680 gaagcaaaca cattgacgtt cgttttcact ttattcgaga tcatgtgaag aaaggaagtg 4740 tggaattggt gcatgtggca agtcaggatc aagttgcaga tatcttcaca aaaccgctac 4800 cgaaagtctt tttcgacaaa ttcaagaaaa tgattggcat gatggatggt agaaacattt 4860 aagtttatgg gggagtttcg ttgaataaac tttaatgtaa tttgtgggtt ttaaagttag 4920 aagttactag aaaagagtag aatgggagtt tggatatgta aaaggtcaaa agttgggagt 4980 gggattttaa ttatgttgtt agtgaggttt taaggccata atgaagattt ttctagaaga 5040 gcttcctaaa gcctataaaa aggatgctct ctcaattgta atatgcacca cagaaagaaa 5100 tacaatagag aggaattcaa ataagagtgt tttcagtgag tgattgcttg ttttacagaa 5160 ttatggaaga agttgatcaa aattcctgaa gcagtatgtc tgattggttt ttatgatcta 5220 catacaactt ctctagacac tatccaacct tagcttgatc agaagatagt agatgtttta 5280 gaaaagaagt gtctagaagt tgagctgaaa aagaagatca tagcatattt gttggctaga 5340 caagaagagt caaagcctta acaaaagctc aaatccttac aaaggctcaa gcaaaagaag 5400 atgaagaagc caaaattgtt gcagaagctc tggtgcaaac ccatacaaaa gtagaggtgg 5460 acaacaatca tatagttttt atgcaatacg tccatcttct agctcccaaa gcaataagca 5520 aaagcctgtt gtacttgtga gtagtcaacc agcaagtatt gttgacacta cataactcat 5580 gatacaagac gccttgcatg aagactgcct tgccattgca acacaactac aggttacaga 5640 ggatcgacaa gcgcttaggc taaagcaagt tgcgtccccc tctgcttatg agatacaaag 5700 ttcctttgct caacttctca ggattgttaa tgttacctgc tgaatcggct acctcaactc 5760 aacctcctac ccaataagaa tctagtcaat aacaatcacc accttcgtct acgtcgctgc 5820 aaccataatg ttttcaaaat ttcacc 5846 //