ID AJ004930; SV 1; linear; genomic RNA; STD; VRL; 2617 BP. XX AC AJ004930; XX DT 24-SEP-1998 (Rel. 57, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Ophiostoma mitovirus 3a gene encoding RNA-dependent RNA polymerase, genomic DE RNA XX KW RNA-dependent RNA polymerase. XX OS Ophiostoma mitovirus 3a OC Viruses; Riboviria; Narnaviridae; Mitovirus. XX RN [1] RP 1-2617 RA Buck K.W.; RT ; RL Submitted (24-MAR-1998) to the INSDC. RL Buck K.W., Biology, Imperial College of Science, Technology and Medicine, RL Prince Consort Road, London, SW7 2BB, U.K.. XX RN [2] RX DOI; 10.1006/viro.1998.9178. RX PUBMED; 9657003. RA Hong Y., Cole T.E., Brasier C.M., Buck K.W.; RT "Evolutionary relationships among putative RNA-dependent RNA polymerases RT encoded by a mitochondrial virus-like RNA in the Dutch elm disease fungus, RT Ophiostoma novo-ulmi, by other viruses and virus-like RNAs and by the RT Arabidopsis mitochondrial genome"; RL Virology 246(1):158-169(1998). XX DR MD5; bc499c8c35c17cdbf7c67e1fff8c5c0f. XX FH Key Location/Qualifiers FH FT source 1..2617 FT /organism="Ophiostoma mitovirus 3a" FT /host="Ophiostoma novo-ulmi" FT /mol_type="genomic RNA" FT /db_xref="taxon:198597" FT variation 246 FT /replace="c" FT /note="polymorphism" FT CDS 269..2425 FT /transl_table=4 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:O92614" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:O92614" FT /protein_id="CAA06228.1" FT /translation="MKRLTLSQNKSNQLTNNDLSNVGYITKQLFPHWIRLLVWSLQLSP FT APYKKFGSRIAILWKANGVSFTVQYLKECTRIVQHFVSGHPVFVTDVMPIGLAGGLPTI FT IPGTLRTLLRSKDSSTIRGVLSTLAVYRIMKMPCVLKLESITDPFKGISDTLPKSEIIN FT GLASLGFEIPKGRSKHLLTLSNPIIYLLSAGPNHSISMMGIWKDIYAWYVSPLFPTLLS FT FIGRMNRGNVLIDLLRAEVSYWEATGVKPSVSPLDLKLGKLAIKEEAAGKARVFAMADS FT ITQSVMAPLNSWVFSKLKDLPMDGTFNQQAPLNRLVQLYQDGLLHDVEFYSYDLSSATD FT RLPMAFQKQIISVLFGSKFAKDWATLLVGRDWYLKDIPYRYSVGQPMGALSSWAMLALS FT HHVIVQIAAMRVGKLPFTNYALLGDDIVIADKAVATSYHMIMTQILGVEINLSKSLVSN FT NSFEFAKRLVTMDGEVSAVGAKNLLVALKSRWGISSVILDLYNKGLALSEQDLRQRFSS FT IPTVSKQFGVDKLLWLVLGPFGFIPSKDGLSAFMKLNRSLSLVDMHILLSCVDEAKFDL FT DKKTWEANIQETVHTLLRFGMLSEPAGFEVFSDFTSSPLYSFIRGQFGNKLSALVQDKP FT VRRLIFDGPLLHFNFYTEGWCDGLMEHLTKKIQSDSQETVSPSNPFKDDKVILPLRGNI FT KGIFFKHVLALMAERDPATVMRWM" FT variation 332 FT /replace="a" FT /note="polymorphism" FT variation 349 FT /replace="c" FT /note="polymorphism" FT variation 640 FT /replace="t" FT /note="polymorphism" FT variation 724 FT /replace="g" FT /note="polymorphism" FT variation 1654 FT /replace="a" FT /note="polymorphism" FT variation 1738 FT /replace="g" FT /note="polymorphism" FT variation 1970 FT /replace="c" FT /note="polymorphism" FT variation 1997 FT /replace="c" FT /note="polymorphism" FT variation 2005 FT /replace="g" FT /note="polymorphism" FT variation 2256 FT /replace="c" FT /note="polymorphism" FT variation 2345 FT /replace="t" FT /note="polymorphism" XX SQ Sequence 2617 BP; 789 A; 486 C; 512 G; 830 T; 0 other; agtatagctt aagctatact caaggactac gtcctccctc agagaattaa cacccctctg 60 agatggatgg aaacttgttt atactttcgc tatagcttta cgcgtatagg gcagtacctt 120 ccccgccgtg cgatcaatta acgtaattgt taatgaactc acaaataaag aatgtttacc 180 agttctttat ggcgattccc tgtaagatac cttactttag tagtaagtgt gtcttccatc 240 ggttaaatca tataaatata ataaaaccat gaaaagacta acactttcac aaaacaagag 300 taatcaactt acgaataatg atttatctaa tgttggatat ataactaaac agttatttcc 360 tcattgaata agattattag tatgaagctt acaattgtct cctgctccgt acaagaagtt 420 cggatcgaga atagcaattc tttgaaaggc taacggtgtt tctttcaccg ttcagtactt 480 aaaagaatgt actagaatcg tccaacattt tgtgtcgggc catccggtat tcgtcactga 540 cgtaatgccg attggtctag ctggaggact ccctactata ataccgggaa ccttaagaac 600 tcttttgaga tctaaggatt ctagtactat aaggggagtc ttgtctacct tggcagtata 660 tagaataatg aaaatgcctt gtgtacttaa gttagagtca atcacagatc cttttaaagg 720 gatttctgat actcttccta agtccgagat cattaacgga ttagcgtcat tgggttttga 780 aattcctaag ggaagatcaa agcacctgtt gaccttatct aatccgatta tttatctatt 840 atctgccggg ccgaatcact ctatatcaat gatgggtatc tgaaaagata tctatgcatg 900 atatgtaagt ccgttattcc ctactcttct ttcttttata ggaaggatga atagaggtaa 960 cgttcttatt gatttgttaa gagccgaagt ttcttactga gaggcaacag gggttaaacc 1020 ctctgtcagt cccttagatc tgaaactagg aaaactagca atcaaagagg aagcagccgg 1080 aaaggctaga gtcttcgcca tggcggattc cattacacag agtgtaatgg ccccgctgaa 1140 tagttgagtc tttagtaaat taaaggacct tccaatggat ggtacattta atcaacaagc 1200 tccactaaac agattagttc aactttatca agatggactt ctccatgacg tagaattcta 1260 ttcttacgat ctgagttctg ctaccgatag attacctatg gcctttcaga agcaaattat 1320 atccgtatta ttcggatcta aatttgctaa ggattgggct actcttcttg ttggaagaga 1380 ctggtatctt aaggatatac cttatagata ctcagttggg caacctatgg gagccttatc 1440 atcatgagca atgcttgcat tgtctcatca tgtaattgta caaatagctg caatgagagt 1500 tggtaaactc ccattcacta attatgcgtt acttggtgat gatatcgtaa tagctgataa 1560 agctgttgcg acatcttatc acatgataat gactcagatc cttggggttg aaatcaactt 1620 atccaaatca cttgtctcta acaactcttt cgagtttgct aagagattgg tgactatgga 1680 tggggaagtt tcagctgtgg gagctaagaa tttattagta gctctaaaat ctagatgagg 1740 aatctcgtct gtgattttag atctatataa taaaggatta gcactttccg aacaagatct 1800 aaggcaaaga ttttcatcta ttcctactgt ttcaaaacag tttggagttg ataaacttct 1860 ttgactagtt cttggtccgt ttggttttat cccatctaaa gatggtctat cagcttttat 1920 gaagttgaat agatcgctct ctttagtaga tatgcatatt ttgctatctt gtgttgacga 1980 agctaagttt gacttagata agaaaacatg agaagctaat atacaggaaa cagtccatac 2040 cttattaagg tttggaatgt tatctgaacc agctggcttt gaagtctttt cggacttcac 2100 ttcttcaccg ttatactctt tcataagagg gcagtttgga aacaaacttt ccgctcttgt 2160 gcaagataaa ccggtgagaa ggctaatctt tgacgggcca ctattgcact ttaacttcta 2220 tactgaaggt tggtgcgatg gtttaatgga acacttgact aagaaaatcc aatcggattc 2280 tcaagagaca gtatctccat ctaacccgtt caaggatgat aaggtcatct taccgttaag 2340 ggggaacatt aaaggaattt tctttaaaca tgttctcgcc ttaatggcag aaagggatcc 2400 agctacagta atgagatgaa tgtaagaaca ttcatatcct tcaccgtagg ggcggactag 2460 aatccaatac acataggaat cctatatgtg gggaaactac gcttagagac tactttgtct 2520 ttcaaatatg actactccct ctcatccatt ggtctgttaa accaatgtgg tgatgatagg 2580 taagatgcaa atttaaaggc ttatgtatat ctctaag 2617 //