ID   AJ002459; SV 1; circular; genomic DNA; STD; VRL; 2725 BP.
XX
AC   AJ002459;
XX
DT   31-MAR-1998 (Rel. 55, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE   Cotton leaf curl Multan virus-[Okra] segment A, complete sequence
XX
KW   AC2 gene; AC3 gene; AC4 gene; AV2 gene; coat protein; rep gene.
XX
OS   Cotton leaf curl Multan virus-[Okra]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [2]
RP   1-2725
RA   Robinson D.J.;
RT   ;
RL   Submitted (23-OCT-1997) to the INSDC.
RL   Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie,
RL   Dundee, Scotland, U.K., DD2 5DA
XX
RN   [3]
RX   PUBMED; 9568988.
RA   Zhou X., Liu Y., Robinson D.J., Harrison B.D.;
RT   "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and
RT   their affinities to DNA-A of geminivirus isolates from okra";
RL   J. Gen. Virol. 79:915-923(1998).
XX
DR   MD5; e3efd35ab797fc8f1de236ccf6e64923.
DR   EuropePMC; PMC3824786; 28324417.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2725
FT                   /organism="Cotton leaf curl Multan virus-[Okra]"
FT                   /segment="A"
FT                   /isolate="olc311"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:223258"
FT   CDS             117..482
FT                   /gene="AV2"
FT                   /db_xref="GOA:O72722"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:O72722"
FT                   /protein_id="CAA05470.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   EAQNVSDVQKSGCSKGL"
FT   CDS             277..1047
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O72721"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:O72721"
FT                   /protein_id="CAA05469.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLEIRIYFYDSVTN"
FT   CDS             complement(1050..1454)
FT                   /gene="AC3"
FT                   /db_xref="GOA:O73565"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:O73565"
FT                   /protein_id="CAA05473.1"
FT                   /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT                   LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT                   VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY"
FT   CDS             complement(1147..1599)
FT                   /gene="AC2"
FT                   /db_xref="GOA:O72724"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:O72724"
FT                   /protein_id="CAA05472.1"
FT                   /translation="MRSSSHLKDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT                   CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQLQH
FT                   SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN"
FT   CDS             complement(1496..2581)
FT                   /gene="AC1"
FT                   /db_xref="GOA:O72723"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:O72723"
FT                   /protein_id="CAA05471.1"
FT                   /translation="MPRALKTNAKNYFLTYPKCSLTKEETLSQLQNLHTPVNKKYIKIC
FT                   RELHQNGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYIDK
FT                   DGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNL
FT                   NANLDRIFQEPPAPYISPFSRSSFDQVPEELEVWAIDNVVDPAARPLRPRSIVIEGDSR
FT                   TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVINDVDPHFLKHFKEFMGAQRDWQS
FT                   NTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPLYS
FT                   GTNQSTAQGSEETQQEEESRS"
FT   CDS             complement(2128..2430)
FT                   /gene="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:O72725"
FT                   /protein_id="CAA05474.1"
FT                   /translation="MGNLIFTCSSSSRASTNARITDSSTWYPQPGQHISIRTFRELNQA
FT                   QMSRPTSTRTGTLSNGESFRSMEDQQEEDNRQQTTLTPQHLTQAVSQRLLESLRN"
XX
SQ   Sequence 2725 BP; 688 A; 543 C; 648 G; 846 T; 0 other;
     accggatggc cgcgcgattt tttatgtggg cccccgatgt atgagattgc tccctcaaag        60
     ctaaataacg ctcccgccca ctataagtac ttgcgcacta agtttcaaat tcaaacatgt       120
     gggatccatt gttaaacgaa ttccctgata cggtgcacgg gtttcggtgt atgctttctg       180
     ttaaatatct gcaactttta tcgcaggatt attcaccgga taccctaggt tacgagttaa       240
     tacgggattt aatctgtatt ctacgttccc gtaattatgt cgaagcgagc tgcagatatc       300
     gtcatttcta cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag cccatacacc       360
     aaccgtgttg ctgcccccat tgtccgcgtc acaaaacaac aggcatggac aaacaggcct       420
     atgaacagga agcccagaat gtatcggatg tacagaagtc cggatgttcc aaagggttgt       480
     gaaggcccat gtaaggtaca gtcttttgag tccagacatg atgttgttca tattggtaag       540
     gtaatgtgta tttctgatgt tactcgtggt gtcggtttga cccatcgtat tggtaaacgt       600
     ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa tattaagacc       660
     aagaatcaca cgaattcggt gatgttcttt ttagtccgcg atcgacgtcc tgttgacaaa       720
     cctcaggatt ttggtgaggt attcaatatg tttgacaacg aacccagtac agcaactgtg       780
     aagaatagtc atagggaccg ttaccaggtg ttgaggaaat ggcatgcaac cgttacgggt       840
     ggtcaatatg ctagtaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat       900
     gttgtttaca atcaacagga agcagggaaa tacgagaatc atacggaaaa tgcgttaatg       960
     ctttatatgg cttgtactca cgctagcaac cctgtttatg ctacgttgga gattaggata      1020
     tatttttatg actctgtaac gaattgatat taataaagtt tgaattttat ttctgaatat      1080
     tgatctacat acatagtttg ttggattaca ttgtacaata catgttctac agctttaata      1140
     actaaattaa ttgaaattac accgagattg ttcagatatt tgaggacttg ggttttgaat      1200
     acccttaaga aaagaccagt ctgagggtgt aaggtcgtcc agattcggaa ggttagaaaa      1260
     cacttgtgca gtcccagagc tttccgagtg ttgtagttga actggatcct gatcgtgagt      1320
     atatccatat tcgtcgtgaa tggacggttg acgtggctga tgatcttgaa atagagggga      1380
     tttggaacct cccagatata tgcgccattc cctgcttgag ctgcagtgat gggttcccct      1440
     gtgcgtgaat ccatggttgt ggcagttgat tgacagataa taagaacacc cgcattcaag      1500
     atctactctc ctcctcctgt tgcgtctctt cgcttccctg tgctgtactt tgattggtac      1560
     ctgagtacag gggtccttca agtgtgatga agatcgcatt ttttactgcc cagtttttta      1620
     gtgcggtgtt cttttcctcg tctaggaatt ctttataact gctgttggga ccaggattgc      1680
     agaggaagat tgttggtatc ccgcctttaa tttgaactgg ctttccgtac tttgtgttgg      1740
     attgccagtc cctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga      1800
     cgtcattaat gacgttatac caggcgtcgt tactgtagac cttgggactc aggtccagat      1860
     gtccacacaa atagttatgt ggtcccagtg atctagccca catcgtcttc cccgttcgac      1920
     tatctccttc aattactata cttcgaggtc taaggggccg cgcagcggga tcgacaacgt      1980
     tatcgatggc ccaaacttca agttcttctg gaacttgatc aaaagaagaa cgagaaaaag      2040
     gagaaatata gggagccggt ggctcctgaa agattctgtc tagatttgca tttaaattat      2100
     gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga gcctctgact      2160
     tactgcctgc gttaagtgct gcggcgtaag cgtcgtttgc tgtctgttgt cctcctcttg      2220
     ctgatcttcc atcgatctga aactctcccc attcgagagt gtccccgtcc ttgtcgatgt      2280
     aggccttgac atctgagctt gatttagctc cctgaatgtt cggatggaaa tgtgctgacc      2340
     tggttgggga taccaggtcg aagaatctgt tattcgtgca ttggtacttg ccctcgaact      2400
     ggatgagcac gtgaagatga ggttccccat tttggtgaag ctctctgcag atcttgatgt      2460
     attttttgtt tactggggta tgtaggtttt gtaattggga gagggtttct tctttagtta      2520
     gagagcattt gggataagtg aggaagtaat ttttggcgtt tgtttttaaa gcacgtggca      2580
     ttttggcaat cggtgtacac tctaactctc tggcaatcgg tgtaatgggg tgcaatatat      2640
     aggtgtaccc caaatggcat tatcgcaatt tgagaaatca tttcaaaatc ctcacgctcc      2700
     aaaaagcggc catccgtata atatt                                            2725
//