ID   AJ002455; SV 1; circular; genomic DNA; STD; VRL; 2744 BP.
XX
AC   AJ002455;
XX
DT   31-MAR-1998 (Rel. 55, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE   Cotton leaf curl Alabad virus-[802a] Pakistan strain segment A, complete
DE   sequence
XX
KW   AC2 gene; AC3 gene; AC4 gene; AV2 gene; coat protein; rep gene.
XX
OS   Cotton leaf curl Alabad virus-[802a]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [2]
RP   1-2744
RA   Robinson D.J.;
RT   ;
RL   Submitted (23-OCT-1997) to the INSDC.
RL   Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie,
RL   Dundee, Scotland, U.K., DD2 5DA
XX
RN   [3]
RX   PUBMED; 9568988.
RA   Zhou X., Liu Y., Robinson D.J., Harrison B.D.;
RT   "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and
RT   their affinities to DNA-A of geminivirus isolates from okra";
RL   J. Gen. Virol. 79:915-923(1998).
XX
DR   MD5; 7beb15f118e7955c11db776270aede92.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2744
FT                   /organism="Cotton leaf curl Alabad virus-[802a]"
FT                   /segment="A"
FT                   /strain="Pakistan"
FT                   /isolate="clc802a"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:222457"
FT   CDS             121..486
FT                   /gene="AV2"
FT                   /db_xref="GOA:Q77CF0"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q77CF0"
FT                   /protein_id="CAA05457.1"
FT                   /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT                   ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT                   ETQNVPDVQKSGCSKGM"
FT   CDS             281..1051
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q77CF1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q77CF1"
FT                   /protein_id="CAA05456.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(1054..1458)
FT                   /gene="AC3"
FT                   /db_xref="GOA:O72717"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:O72717"
FT                   /protein_id="CAA05460.1"
FT                   /translation="MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDI
FT                   ITMRIQFNYNLRKALGVHKCFLTFRIWTTLYPPTGLFLRVFKTQVLKYLNNLGVISLNL
FT                   VIKAVEHVLYNVINQTMYVDQYSDIKFKLY"
FT   CDS             complement(1151..1603)
FT                   /gene="AC2"
FT                   /db_xref="GOA:O72716"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:O72716"
FT                   /protein_id="CAA05459.1"
FT                   /translation="MQSSSPSRNHCTQLPIKVQHREAKRRTRRRRVDLECGCSYYLSIN
FT                   CHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP
FT                   SESSGSAQVFSNLPNLDDLIPSDWSFLKGIQNPSTQVSQQSRCNLT"
FT   CDS             complement(1500..2591)
FT                   /gene="AC1"
FT                   /db_xref="GOA:O73577"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:O73577"
FT                   /protein_id="CAA05458.1"
FT                   /translation="MPRNNSFCINAKNIFLTFPKCPIPKEQMLDILSNISCPSDKLFIR
FT                   VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPHTSTQFHPNFQGAKSSSDVKSYI
FT                   EKDGDYIDWGTFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYH
FT                   NLNSNLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPQSIVIEGD
FT                   SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT                   QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAVKNAVFITLEEPL
FT                   YSIAHQSPAQGGQEEDQEEESGS"
FT   CDS             complement(2177..2434)
FT                   /gene="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:O73569"
FT                   /protein_id="CAA05461.1"
FT                   /translation="MGLCISMHSSNSKVKPSSETPDISMSLTLIPPPNSIQTSRELSPA
FT                   LMLSPTSRRTEITSTGAHFRSMEDLQEEVNRQLMMLLQKP"
XX
SQ   Sequence 2744 BP; 740 A; 544 C; 629 G; 831 T; 0 other;
     accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg atgcagactc        60
     aaagcttaga taacgctcct tcggctataa gtacttgcgc actaagtttc aaattgaaac       120
     atgtgggatc cactagtaaa cgaattcccg gatacggtgc acgggtttcg ttgtatgctt       180
     tctgtcaaat atttgcaact tttgtcgcag gattattctc cagataccct tggttacgag       240
     ttaatacgtg atttaatctg tattctacgc tcccgtaatt atgtcgaagc gagctgccga       300
     tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata       360
     caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag       420
     gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg       480
     atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg       540
     taaggtaatg tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa       600
     gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa       660
     gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccggtaga       720
     taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggcgac       780
     cgtgaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac       840
     tggtggtcaa tatgcgagta aggagcaggc attggtcaag aagtttgtta gggttaacaa       900
     ctacgttgtt tacaaccagc aggaagcagg aaaatacgag aatcacaccg agaatgcatt       960
     gatgctttat atggcttgta cccatgctag taacccagtt tatgctacgc ttaagattag      1020
     aatatatttt tatgactctg taacgaacta atattaataa agtttgaatt ttatatctga      1080
     atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caacggcttt      1140
     aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt      1200
     gaataccctt aagaaaagac cagtcggagg gtataaggtc gtccagattc ggaaggttag      1260
     aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt      1320
     tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ctgaggattt tgaaataaag      1380
     gggatttgga acctcccaga taaagacgcc attcgttgaa tgagctgcag tgatgcgttc      1440
     ccctgtgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacatt      1500
     caagatccac tctcctcctc ctggtcctcc tcttggcctc cctgtgctgg actttgatgg      1560
     gcaattgagt acagtggttc ctcgagggtg atgaagactg cattcttaac tgcccagttt      1620
     tttagggctt ggttcttttc ctcgtccaga tattctttat aagatgagtt tggcccagga      1680
     ttgcagagga agattgtggg tattccacct ttaatttgaa ctggcttccc gtactttgtg      1740
     tttgattgcc agtccctttg ggcccccatg aactctttaa agtgcttgag gaagtgcgga      1800
     tcgacatcat caatgacgtt ataccacgca tcattgctgt aaactttggg gcttaaatct      1860
     aaatgaccgc ataagtaatt atgaggccct aatgacctag cccacatcgt tttacccgta      1920
     cgactgtctc cctcaatcac tatactttga ggcctcagag gccgcgcagc ggcatccatg      1980
     acattctcgg agacccactc ttcaagttct tcaggaactt gattaaaaga agaagataaa      2040
     aaaggagaaa cataaacctc caacggagga gtgaaaatcc tatctaaatt actatttaaa      2100
     ttatgatatt gaaaaataaa tttttctggg agtttttccc ttattatagc catagctgct      2160
     tctttagaac ctgcatttag ggcttctgca gcagcatcat tagctgtctg ttgacctcct      2220
     cttgcagatc ttccatcgat ctgaaatgtg ccccagtcga tgtaatctcc gtccttctcg      2280
     atgtaggact taacatcaga gctggactta gctccctgga agtttggatg gaattgggtg      2340
     gaggtatgag ggtgagtgac atcgaaatgt ctggggtttc tgaacttggc tttacctttg      2400
     aattggatga gtgcatggat atgcagagac ccatcttggt gtttttcttg tgcaacccta      2460
     atgaataatt tgtctgaagg gcatgaaatg ttagataata tatctaacat ctgttctttt      2520
     ggaattgggc attttgggaa agtaagaaaa atattttttg catttatgca aaaagaatta      2580
     tttctgggca tttttgctat cggggacact taaaactcat atcaattggg gacactgggg      2640
     actcatttat actgcgtccc taaatggcat aaatgtaaat atttgccttt atgtttgaat      2700
     ttcaaattcc aaacgctcca aaaagcggcc atccgtataa tatt                       2744
//