ID   AJ002448; SV 1; circular; genomic DNA; STD; VRL; 2748 BP.
XX
AC   AJ002448;
XX
DT   31-MAR-1998 (Rel. 55, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE   Cotton leaf curl Kokhran virus-[72b] Pakistan strain segment A, complete
DE   sequence
XX
KW   AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; coat protein; rep gene.
XX
OS   Cotton leaf curl Kokhran virus-[72b]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [2]
RP   1-2748
RA   Robinson D.J.;
RT   ;
RL   Submitted (23-OCT-1997) to the INSDC.
RL   Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie,
RL   Dundee, Scotland, U.K., DD2 5DA
XX
RN   [3]
RX   PUBMED; 9568988.
RA   Zhou X., Liu Y., Robinson D.J., Harrison B.D.;
RT   "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and
RT   their affinities to DNA-A of geminivirus isolates from okra";
RL   J. Gen. Virol. 79:915-923(1998).
XX
DR   MD5; 094ce3231b0c7fff6c82dc9b5978eeac.
DR   EuropePMC; PMC5727119; 29234082.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2748
FT                   /organism="Cotton leaf curl Kokhran virus-[72b]"
FT                   /segment="A"
FT                   /strain="Pakistan"
FT                   /isolate="clc72b"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:222713"
FT   CDS             132..488
FT                   /gene="AV2"
FT                   /db_xref="GOA:Q77CF7"
FT                   /db_xref="InterPro:IPR002511"
FT                   /db_xref="InterPro:IPR005159"
FT                   /db_xref="UniProtKB/TrEMBL:Q77CF7"
FT                   /protein_id="CAA05426.1"
FT                   /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT                   ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT                   KAQDVQDVQKSRCS"
FT   CDS             292..1062
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q77CF8"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q77CF8"
FT                   /protein_id="CAA05425.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT                   NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT                   VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT                   SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT   CDS             complement(1059..1463)
FT                   /gene="AC3"
FT                   /db_xref="GOA:O72709"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:O72709"
FT                   /protein_id="CAA05429.1"
FT                   /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRAFLMNRDI
FT                   ITVQIQFNLNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT                   VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
FT   CDS             complement(1204..1608)
FT                   /gene="AC2"
FT                   /db_xref="GOA:O72708"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:O72708"
FT                   /protein_id="CAA05428.1"
FT                   /translation="MQSSSPSRAHSTLVPIKAQHRLAKKGTRRRRVDLPCGCSYFIALA
FT                   CHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPQSSIPNEQRHHHRPDTVQSQP
FT                   EESVGDTQMFHSFPNLDDLTASDWSFLKGL"
FT   CDS             complement(1511..2593)
FT                   /gene="AC1"
FT                   /product="Rep"
FT                   /db_xref="GOA:O72707"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:O72707"
FT                   /protein_id="CAA05427.1"
FT                   /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI
FT                   CRELHEDGTPHLHVLIQFEGKLKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE
FT                   KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN
FT                   LNANLDRIFQEPPAPYVSPFSSSSFDQVPDELEVWAAENVVSAAARANRPISVVIEGDS
FT                   RTGKTMWARSLGPHNYLCGHLNLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLESPLY
FT                   SGSNQSAAQASQEGDQTSES"
FT   CDS             complement(2137..2439)
FT                   /gene="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q77CF6"
FT                   /protein_id="CAA05430.1"
FT                   /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA
FT                   PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN"
XX
SQ   Sequence 2748 BP; 743 A; 555 C; 629 G; 821 T; 0 other;
     accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata        60
     tgacgcgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat       120
     gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta       180
     ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat       240
     tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag       300
     cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctcaacttc       360
     gacagcccat atgtgagccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca       420
     tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat       480
     gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt       540
     cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat       600
     agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat       660
     gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt       720
     agacctgttg ataaacctca agattttgga gaggtattta atatgtttga taatgagccc       780
     agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat       840
     gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt       900
     agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga gaatcattct       960
     gagaatgctt taatgttgta tatggcgtgt actcacgcct ctaacccagt gtatgctacc      1020
     ttgaagatac ggatctactt ctatgattcc gtgacaaatt aataaatatt gaattttatt      1080
     gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact      1140
     gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga      1200
     gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa      1260
     gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgagattgaa ctgtatctgg      1320
     acggtgatga tgtctctgtt cattaggaat gctcgattgt ggtgctctgt tatcttgaaa      1380
     tacaggggat tttgaatctc ccagataaac acgccattct ctgcttgagc tgcagtgatg      1440
     agttcccctg tgcgtgaatc catggttgtg gcaggctaat gctatgaagt acgaacaccc      1500
     acaagggaga tcaactctcc gacgtctggt ccccttcttg gctagcctgt gctgcgcttt      1560
     gattggaacc agagtagagt gggctctcga gggtgatgaa gattgcattc tttaaagccc      1620
     aatttttgag tgcagaattc ttctcttcat ccaaaaactc tttatagctt gaattgggtc      1680
     ctggattgca gaggaagata gtgggaattc cgcctttaat ttgaactggc ttcccgtatt      1740
     ttgtatttga ttgccagtcc ttttgggccc ccatgaactc cttaaagtgc tttaggtaat      1800
     gcgggtcgac gtcatcaatg acgttaaacc aggcgtcatt actgtatacc cttgggctca      1860
     gatttagatg tccacacaga taattatgtg gacctaatga tctggcccac atcgtcttcc      1920
     ccgtcctact gtcaccctca atcactacac ttattggtct attggcccgc gcagcggcac      1980
     tgacgacgtt ctcggcagcc cacacttcaa gttcatctgg aacttgatcg aaagaagaag      2040
     aggaaaaagg agaaacataa ggagctggtg gctcctgaaa gattctgtct agatttgcat      2100
     ttaaattatg aaattgcagt acaaaatcct taggagctag ttccttaatg actctaagag      2160
     cctccgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc      2220
     ctcctcttgc tgaccttccg tcgatctgaa attgccccca gtcgagaatg tccccgtcct      2280
     tctcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat      2340
     gtgctgacct gcttggggag accaagtcga agaatcgcat attctggcac ttgagtttcc      2400
     cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga      2460
     ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct      2520
     ctttggtgag agaacatttg ggataagtga tgaaatagtt tttggaataa ataccgttcc      2580
     gctttggagg catgttgact aaaattgatc accgattgac cgctcttgca actctccccg      2640
     gtatatcggt gatcaatata tagtgatcac caaatggcat aatggtaata aaaaaacttt      2700
     aatttgaaat tcaaaccaaa aggctaaagc ggccatccgt ttaatatt                   2748
//