ID   AJ002446; SV 1; linear; genomic DNA; STD; VRL; 829 BP.
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AC   AJ002446;
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DT   31-MAR-1998 (Rel. 55, Created)
DT   06-MAR-2003 (Rel. 75, Last updated, Version 3)
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DE   cotton leaf curl virus Pakistan strain of AV1 gene encoding coat protein.
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KW   AV1 gene; coat protein.
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OS   Cotton leaf curl virus
OC   Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus.
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RN   [1]
RX   PUBMED; 9568988.
RA   Zhou X., Liu Y., Robinson D.J., Harrison B.D.;
RT   "Four DNA-A variants among Pakistani isolates of cotton leaf curl virus and
RT   their affinities to DNA-A of geminivirus isolates from okra";
RL   J. Gen. Virol. 79:915-923(1998).
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RN   [2]
RP   1-829
RA   Robinson D.J.;
RT   ;
RL   Submitted (23-OCT-1997) to the INSDC.
RL   Robinson D. J., Scottish Crop Research Institute, Virology, Invergowrie,
RL   Dundee, Scotland, U.K., DD2 5DA
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DR   MD5; 24f45d9abef2628c54a20122a2cb23bf.
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FH   Key             Location/Qualifiers
FH
FT   source          1..829
FT                   /organism="Cotton leaf curl virus"
FT                   /segment="A"
FT                   /strain="Pakistan"
FT                   /isolate="clc80"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:53010"
FT   CDS             47..817
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O72703"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:O72703"
FT                   /protein_id="CAA05418.1"
FT                   /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT                   NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT                   TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
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SQ   Sequence 829 BP; 238 A; 154 C; 199 G; 238 T; 0 other;
     tacgagttaa tacgggattt aatttgtatt ttacgctccc gtaattatgt cgaagcgagc        60
     tgccgatatc gtcatttcta cgcccgcgtc gaaagtacgc cggcgtctga acttcggcag       120
     cccatacacc agccgtgctg ctgcccccat tgtccgcgtc acaaaacaac aggcatggac       180
     aaacaggcct atgaacagga agcccagaat gtatcggatg tacagaagtc cggatgttcc       240
     aaagggttgt gaaggcccat gtaaggtaca atcttttgag tcgagacatg atgtcgttca       300
     tattggtaag gtaatgtgta tttctgatgt tactcgtggt gtcggtttga cccatcgtat       360
     tggtaaacgt ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa       420
     tataaagacc aagaatcaca cgaattcggt gatgttcttt ttagtccgcg atcgacgtcc       480
     tgttgacaaa cctcaggatt ttggtgaggt attcaatatg tttgacaacg aacccagtac       540
     agcaactgtg aagaatagtc atagggaccg ttaccaggtg ttgaggaaat ggcatgcaac       600
     cgttacgggt ggtcaatatg catcgaagga acaggctttg gtcaagaagt ttgtcagagt       660
     taacaattat gttgtttaca atcaacagga agcaggaaaa tacgagaatc atacggaaaa       720
     tgcgttaatg ctttatatgg cttgtactca cgctagcaac cctgtttatg ctacgttgaa       780
     gattaggata tatttttatg actctgtaac gaattgatat taataaagt                   829
//