ID AF512832; SV 1; linear; genomic RNA; STD; VRL; 3332 BP. XX AC AF512832; XX DT 04-OCT-2002 (Rel. 73, Created) DT 13-SEP-2008 (Rel. 97, Last updated, Version 5) XX DE Cupixi virus strain BeAn 119303 glycoprotein precursor and nucleocapsid DE protein genes, complete cds. XX KW . XX OS Mammarenavirus cupixiense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-3332 RX DOI; 10.1016/S0006-291X(02)02053-3. RX PUBMED; 12207889. RA Charrel R.N., Feldmann H., Fulhorst C.F., Khelifa R., de Chesse R., RA de Lamballerie X.; RT "Phylogeny of New World arenaviruses based on the complete coding sequences RT of the small genomic segment identified an evolutionary lineage produced by RT intrasegmental recombination"; RL Biochem. Biophys. Res. Commun. 296(5):1118-1124(2002). XX RN [2] RP 1-3332 RX DOI; 10.1016/j.mib.2008.06.001. RX PUBMED; 18602020. RA Charrel R.N., de Lamballerie X., Emonet S.; RT "Phylogeny of the genus Arenavirus"; RL Curr Opin Microbiol 11(4):362-368(2008). XX RN [3] RP 1-3332 RA Charrel R.N., de Chesse R., de Lamballerie X.; RT ; RL Submitted (16-MAY-2002) to the INSDC. RL Unite des Virus Emergents (EA3292, IRD UR034, IFR48), Universite de la RL Mediterranee, 27 blvd Jean Moulin, Marseille 13005, France XX DR MD5; f67a2f3786c1baee7318150959e06768. DR EuropePMC; PMC2277458; 18421377. DR EuropePMC; PMC2374749; 18304671. DR EuropePMC; PMC2658809; 19343214. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC2714187; 18454597. DR EuropePMC; PMC3053032; 21056893. DR EuropePMC; PMC3210867; 21982818. DR EuropePMC; PMC3309595; 22377271. DR EuropePMC; PMC4111098; 24161346. DR EuropePMC; PMC4136298; 24920811. DR EuropePMC; PMC4217180; 25352624. XX FH Key Location/Qualifiers FH FT source 1..3332 FT /organism="Mammarenavirus cupixiense" FT /segment="S" FT /strain="BeAn 119303" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052304" FT CDS 55..1497 FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1+G2 precursor" FT /db_xref="GOA:Q8B115" FT /db_xref="InterPro:IPR001535" FT /db_xref="UniProtKB/Swiss-Prot:Q8B115" FT /func_characterised="identical sequence" FT /protein_id="AAN32963.1" FT /translation="MGQLVSFFQEIPVFFQEALNIALAVVTLLAIVKGVLNLWKSGLFQ FT LLMFLILAGRSCSFRIGYHTSFESFTMTIGGVFHELPALCKVNDTYNLVRLSHNSSLAL FT SVEYGDTGTVMCEHGHVVSGNYTECTGASEEYNWVLDWVLRGLQHDFSRDPVICCEPKK FT KTNAEFQFRLNLTQRHKGDHYQNKIKTALTHLFGPFAYNEKDPKIFVTMRNTTWTNQCV FT MSHTDSLRLLASNGGNSFSGRGLKAFFSWSLSDSTGVDMPGGYCLEKWMLIASELKCFG FT NTALAKCNLKHDSEFCDMIKLFDFNKNAISKLNNNTIEAVNQLTKTVNSLISDNLLMKN FT RLRELLKVPYCNYTRFWYVNHTRTGEHSLPKCWLVNNGSYLNESDFRNEWILESDHLIS FT EMLSKEYQERQGRTPLTLVDLCFWSAVFYTTTLFLHLVGFPTHRHISGEPCPLPHRLNR FT HGACNCGRFKRLKKPLVWYKHH" FT CDS complement(1593..3275) FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:Q8BD28" FT /db_xref="InterPro:IPR000229" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/Swiss-Prot:Q8BD28" FT /func_characterised="identical sequence" FT /protein_id="AAN32964.1" FT /translation="MSLSKEVPSFRWTQSLRRELSSYTQQTKTLVLKDAKMIADSLDFN FT QVSQVQRVLRKAKRSDADLDKLRDLNQEVDKLMVMKSVQKNTILKLGDLGKDELMDLAT FT DLEKLKRKIGDSGRDGPRPYMGNLTQSQLDKRTQILRVLGFQQQTGVSRGVVRLWDVSN FT PAKLNNQFGSMPALTIACMTVQGGETMNNVVQALTSLGLLYTVKYPNLEDLEKLTQEHD FT CLQIITRDESAVNISGYNFSLSAAVKAGASLIDGGNMLETIRVTPNNFSSIIKATLTAK FT RKENMFVDERPGNRNPYENLLYKVCLSGEGWPYIGSRSQINGRSWDNTSVDLNPKPDPG FT PRAPEKNGQNLRLSNLTEMQEAVIKEAMQKLDPTNTIWMDIEGPPTDPVELAVFQPTSG FT YYFHCFRKPHDEKGFKNGSRHSHGILLKDLEDAQPGLLSYILGLLPQNIVITTQGADDI FT RKLLDVHGRKDIKLVDVRLTNEQSRIFEQQVWERYNSLCRAHNGVIVPKKKNKESNIQK FT EPHCALLDCIMFQSVLDGHLPDTSLKPLLPDNLVHQAKPAFVM" XX SQ Sequence 3332 BP; 834 A; 739 C; 766 G; 993 T; 0 other; cgcacagtgg atcctaggcg acattgacga cgcattgctt ggagattctt aacaatgggc 60 cagttagtga gcttctttca ggagatacca gtgttctttc aggaagctct gaatatagcc 120 ttggctgttg tcaccctact ggccatcgtc aagggggttc tgaatctctg gaaatcaggt 180 ctcttccagc tgttgatgtt tttaatcttg gcaggaaggt catgctcttt tagaattggg 240 tatcacacca gctttgagtc tttcaccatg accattgggg gtgttttcca tgagttaccc 300 gctctgtgca aggtgaatga cacctataac ttggttaggc tctctcataa tagcagtttg 360 gcactctcag ttgagtacgg cgacactggc acagttatgt gtgaacatgg gcatgtggtt 420 agtggaaact acaccgaatg cactggagct tccgaggaat acaactgggt tcttgactgg 480 gtcctgagag gtctacaaca tgattttagc agagatccgg taatctgttg cgagccaaag 540 aagaaaacaa atgctgagtt tcagtttcga ttaaacctga cgcagcgtca taagggtgac 600 cattatcaga acaaaattaa gacagcgttg acccatctat ttggcccatt tgcatacaat 660 gagaaagacc cgaagatatt cgttaccatg aggaatacca catggacgaa tcagtgtgtc 720 atgagtcata ctgactcatt aaggttgcta gccagtaatg ggggcaattc attctcaggg 780 agaggactca aagccttctt cagttggtct ttgtcagatt caacaggtgt tgacatgcca 840 ggtggttatt gtctagaaaa gtggatgttg attgcttctg aattgaagtg ttttgggaac 900 acagcattgg ctaaatgcaa tttgaagcat gattcagaat tctgtgatat gatcaaactc 960 tttgatttca acaaaaatgc aatcagtaaa cttaataata acacaattga ggctgtcaat 1020 cagttgacaa aaacagtcaa cagcctcatc tctgataatc tactgatgaa gaatagatta 1080 agggagcttt tgaaagttcc ttactgcaac tatactagat tctggtatgt aaaccacaca 1140 agaactggag aacattccct tccaaagtgc tggttggtca acaacggaag ctaccttaat 1200 gaaagtgatt ttagaaatga gtggattttg gaaagtgacc accttatttc ggaaatgttg 1260 agcaaggaat atcaagagag acaggggagg accccactga cacttgtgga cctctgtttc 1320 tggagtgccg tcttctacac gactacactc ttcctccatc tagtgggttt cccaacccac 1380 agacacatct caggtgagcc ttgtccactc ccccacagac tcaacaggca tggtgcctgt 1440 aactgcgggc gcttcaagag actaaaaaag cctttagttt ggtataaaca tcattgaatc 1500 tctatcccca aatctcaccg gcccgggctt tgcccgggtc ggtggggcgc ctcccagccc 1560 gcggcagagc cgcgggctgg gagggcatac gcctacatca cgaatgctgg tttggcctga 1620 tgcaccaggt tgtcggggag tagtggctta aggctggtgt ctggaagatg accatctagc 1680 actgattgga acatgatgca atccagaaga gcacagtgag gctctttttg aatgttggat 1740 tccttattct ttttcttagg gacaatgacc ccattgtgag ctctgcataa ggagttgtat 1800 ctttcccaca cttgttgttc aaaaattctt gactgctcat ttgtgagcct cacatccaca 1860 agtttaatgt ctttccttcc atggacatcc aagagttttc ttatgtcatc tgcaccctgc 1920 gtcgtgatga caatgttctg agggagtaaa cccaagatgt agctcaagag accaggttga 1980 gcgtcctcaa gatcctttag tagaataccg tgagaatgtc tgctaccatt tttgaacccc 2040 ttttcatcat gaggtttcct gaaacagtgg aaatagtagc cacttgtagg ttggaaaaca 2100 gctagctcta ctgggtctgt aggtggacct tcaatgtcca tccagatggt gtttgtcgga 2160 tcaagttttt gcatggcctc tttgatgact gcttcttgca tttcagtgag gttgctaagt 2220 cttaaatttt gcccattttt ctcaggcgcc ctgggcccag ggtccggctt ggggttaagg 2280 tcaacactgg tgttatccca tgacctaccg ttgatttgtg accttgaacc tatgtagggc 2340 caaccttctc cggagagaca aactttgtaa aggagattct cataaggatt tctgtttcca 2400 ggtctttcgt cgacaaacat gttctctttt cttttggcag tcaaagtggc ctttattatg 2460 gaggagaagt tattgggtgt gactcttata gtctccagca tatttcctcc atcaataagt 2520 gaggctcctg ctttcacagc tgcagatagg ctaaagttgt agcctgagat gttcactgca 2580 ctttcatccc ttgtaattat ttggaggcag tcgtgctcct gtgtcagttt ttccaaatcc 2640 tccaaattcg ggtatttgac tgtgtataaa agcccaaggg atgttaaagc ttgcaccaca 2700 ttattcatgg tttcacctcc ttgaactgtc atacaggcta ttgtaagtgc tggcattgac 2760 ccaaactgat tgtttagttt agctgggttg gagacatccc agagtctaac aactcctcta 2820 ctgaccccag tctgctgctg gaaccccagg acccttaaaa tttgtgtcct cttgtctagt 2880 tgtgactgtg taaggtttcc catgtagggg cgaggaccat ccctgccact gtcaccaatt 2940 ttccgcttca atttttccag atctgttgct agatccatga gctcgtcttt ccccaggtct 3000 ccaagtttaa gaattgtgtt tttttgcaca ctcttcataa ccataagttt gtccacctct 3060 tgatttagat cccttagttt gtctagatca gcatcgctcc tcttagcttt ccggaggact 3120 ctttgtacct gagacacctg attgaagtcc aggctatcag ctatcatttt agcatccttt 3180 aagacgagtg tcttggtttg ctgtgtgtag ctactcagtt ctcttctcag agattgagtc 3240 cagcgaaagc tgggaacctc tttggagaga gacattttgt gaaaggtttc cgcctcaagt 3300 gaaagacaaa aatgcctagg atccactgtg cg 3332 //