ID   AF490004; SV 1; circular; genomic DNA; STD; VRL; 2622 BP.
XX
AC   AF490004;
XX
DT   15-APR-2002 (Rel. 71, Created)
DT   31-AUG-2025 (Rel. 144, Last updated, Version 9)
XX
DE   Tomato chlorotic mottle virus-[Brazil] isolate BA-Se1 DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Tomato chlorotic mottle virus
OC   Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes;
OC   Geplafuvirales; Geminiviridae; Begomovirus;
OC   Begomovirus solanumpallidivariati.
XX
RN   [1]
RP   1-2622
RA   Ribeiro S.G., Lacorte C.C., Inoue-Nagata A.K., Carmo I., Orlandini D.,
RA   Andrade E.C., Nagata T., Zerbini F.M. Jr.;
RT   "Tomato chlorotic mottle virus, a novel tomato begomovirus from Brazil";
RL   Unpublished.
XX
RN   [2]
RP   1-2622
RA   Ribeiro S.G.;
RT   ;
RL   Submitted (04-MAR-2002) to the INSDC.
RL   Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao Biologica -
RL   Final Av. W/5 Norte, Brasilia, DF 70770-900, Brazil
XX
DR   MD5; d94355a1a8090b7ef810c3175beac101.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2622
FT                   /organism="Tomato chlorotic mottle virus"
FT                   /segment="DNA-A"
FT                   /isolate="BA-Se1"
FT                   /mol_type="genomic DNA"
FT                   /clone="p56"
FT                   /db_xref="taxon:172391"
FT   CDS             199..954
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="capsid protein"
FT                   /note="CP"
FT                   /protein_id="AAM12753.1"
FT                   /translation="MPKRDAPWRHMASTSKISRGVNNSPRAGVGPKSNKAADWVNRPMY
FT                   RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   gene            199..954
FT                   /gene="AV1"
FT   CDS             complement(951..1349)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication-enhancer protein"
FT                   /note="REn"
FT                   /protein_id="AAM12756.1"
FT                   /translation="MDSRTGELITAHQAENGVYIWEISNPLYFKMYNVEDILYTRTRVY
FT                   HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVVLYIDQLGVISINN
FT                   VIRAVRFATDRQYVNAVLEDHSIKYKLY"
FT   gene            complement(951..1349)
FT                   /gene="AC3"
FT   CDS             complement(1096..1485)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="trans-activation protein"
FT                   /note="TrAP"
FT                   /protein_id="AAM12755.1"
FT                   /translation="MRNSSFSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG
FT                   HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQCRGHTVHEDQSVPRTDPVQSQPEEST
FT                   GSSQGLSQLPNLDDIPESFWDDIFK"
FT   gene            complement(1096..1485)
FT                   /gene="AC2"
FT   CDS             complement(1427..2482)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /note="Rep"
FT                   /protein_id="AAM12754.1"
FT                   /translation="MPLPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR
FT                   VSRELHENGEPHLHVLIQFEGKYNCKNNKFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV
FT                   EKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH
FT                   NIKSNLERIFVKAPEPWVPPFPLSSFTNVPVEMQDWVNDYFGRDAAARPERPISIIIEG
FT                   DSRTGKAMWARTLGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQ
FT                   RDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLNKQENSALDSWTKHNAQFIFLN
FT                   SPLYQSSTSGC"
FT   gene            complement(1427..2482)
FT                   /gene="AC1"
FT   CDS             complement(2032..2325)
FT                   /codon_start=1
FT                   /gene="AC4"
FT                   /product="putative AC4 protein"
FT                   /protein_id="AAM12757.1"
FT                   /translation="MGNLISTCSSSSKVNTTARTTSSSTSYPQPGQHISIRTFRELRAP
FT                   QTSNHTWRKTETSLIMEFSRSMEDQQEEVSNLPTTRTPRFSTQDQSWKHSIY"
FT   gene            complement(2032..2325)
FT                   /gene="AC4"
XX
SQ   Sequence 2622 BP; 698 A; 546 C; 603 G; 775 T; 0 other;
     accggatggc cgcggggttt ttttaaaggc ccattcattt gggccgattc ttttgggcct        60
     tcacatttaa tttaaatgag tgtaaaattg gcccaatcag attacgtttg acgagctaag       120
     atatttacga ctacttagtg cccaagttgt ataacggcta taaattaaac gtgcatatgt       180
     cgataacttt aattcaaaat gcctaagcgc gatgccccat ggcgccacat ggcaagtacg       240
     tctaagatta gccggggtgt taataattct cctcgggcag gagttgggcc aaaatccaat       300
     aaggccgctg attgggtaaa caggcccatg tacaggaagc ccaagatata caggatgtac       360
     agaacccccg atgttccaag gggctgtgaa ggcccatgta aagtccaatc gtttgaacag       420
     cgtcacgaca tctcccatac tgggaaggtg atgtgcgtct ctgatgtgac acgtggtaac       480
     ggtattacac accgtgtggg taagcgtttc tgtgttaagt ctgtgtatat acttggtaag       540
     atatggatgg atgagaacat caagttgaag aaccacacaa acagtgctat gttttggttg       600
     gtcagggatc gtagaccgta tggtacccca atggattttg gtcaggtgtt caacatgttc       660
     gacaacgagc ccagtactgc caccgtgaag aacgatcttc gtgatcgttt tcaagttatg       720
     cacaagtttt acgccaaggt tacgggtgga caatacgcaa gtaacgaaca ggcgctggtc       780
     aagcggttct ggaaggtcaa caatcacgtc gtttacaacc atcaagaagc cgggaagtac       840
     gagaatcata ctgagaacgc actattactg tatatggcat gtactcatgc ctctaaccca       900
     gtgtatgcaa ctttaaaaat tcggatctat ttttatgatt cgataacaaa ttaataaagt       960
     ttgtatttta ttgaatgatc ttcgagtaca gcatttacat attgtctgtc tgttgcgaat      1020
     cgaacagctc taattacatt attaattgaa ataacgccta actgatcaat atacaacact      1080
     actaaatatt taaatctatt taaatatgtc atcccagaag ctctcaggga tgtcgtccag      1140
     atttggaagt tgagataagc cttgtgaaga cccagtactc tcctcaggtt gtgattgaac      1200
     cggatctgta cgtggtacac tctggtcctc gtgtacagta tgtcctcgac attgtacatc      1260
     ttgaaataaa ggggatttga tatttcccag atatacacgc cattctctgc ctgatgtgca      1320
     gtgatgagtt cccctgtgcg tgaatccatg tcctgcgcag tcaatgtgta cgaaaatgga      1380
     gcacccgcac tgcaaatcaa ttcgtcttct tcggatagct ctctttttag cagcccgatg      1440
     ttgaactttg atagaggggg gagttgagaa agatgaattg cgcattgtgc tttgtccaac      1500
     tatctaatgc tgagttttcc tgtttgttta ggaaacattt atagctggcc ccctcgccag      1560
     gattgcaaag cacgatgcat gggataccac ctttaatttg aaccggcttt ccgtacttgc      1620
     agtttgattg ccaatccctt tgggccccaa tcaattcttt ccagtgcttt agttttagat      1680
     aatgcggtgc gacatcatca atgacgttat actgcacatc gtttgagtag acctttgaat      1740
     tgaaatcgag gtgaccactc aagtaattat gggaccccaa tgtacgtgcc cacattgcct      1800
     tccccgtcct tgaatcaccc tcgattatta tactgatagg tctctccggc cgcgcagcgg      1860
     catctctccc gaaataatca ttgacccagt cttgcatctc gacaggaacg ttagtgaacg      1920
     atgagagggg aaacggagga acccaaggtt ctggagcctt aacgaaaata cgctctagat      1980
     tagatttaat attatgatgt tgaagcacga aatctttggg ttgttcctct cttaatatat      2040
     tgagtgcttc catgactgat cctgcgttga gaaccttggc gtacgtgtcg ttggcagatt      2100
     gctgacctcc tcttgctgat cttccatcga tctggaaaac tccatgatca acgaagtctc      2160
     cgtctttctc cacgtatgat ttgacgtctg aggagctctt agctccctga atgttcggat      2220
     ggaaatgtgc tgacctggtt ggggatacga ggtcgaagaa cttgttgttc ttgcagttgt      2280
     atttaccttc gaactggatg agcacgtgga gatgaggttc cccattttcg tgtagttctc      2340
     ttgatacacg aatgaataat ttgtttgttg gtgtgttcag agctagtaat tgggaaagtg      2400
     cttcttcttt ggaaagagag cagtgaggat atgttagaaa ataatttttg gaatttactc      2460
     ggaaatgtct ggggagtggc atatttgtaa taatagctgg gcaccgattg gggactctct      2520
     aaaactctaa agcaattggg gactggggtc ctatatatac tagaaccctc tatagaactt      2580
     tcaatctcgt tcacacacgt ggcggccatc cgttataata tt                         2622
//